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RBG_16_NSX_64_22_RBG_16_scaffold_31110

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Displaying 24 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RBG_16_NSX_64_22_RBG_16_scaffold_31110_1
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

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1..219
DNA (219bp) protein (73aa)
hypothetical protein Tax=RBG_16_Nitrospirae_64_22_curated
Putative uncharacterized protein id=2834329 bin=GWC2_Nitrospirae-rel_56_14 species=Beggiatoa sp. PS genus=Beggiatoa taxon_order=Thiotrichales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWC2_Nitrospirae-rel_56_14 organism_group=Nitrospirae organism_desc=Pretty good; based on recA
hypothetical protein
RBG_16_NSX_64_22_RBG_16_scaffold_31110_2
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

488..748
DNA (261bp) protein (87aa)
Uncharacterized protein n=1 Tax=Methylomicrobium album BG8 RepID=H8GIW3_METAL
hypothetical protein Tax=RBG_16_Nitrospirae_64_22_curated
hypothetical protein
RBG_16_NSX_64_22_RBG_16_scaffold_31110_3
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

865..1209
DNA (345bp) protein (115aa)
Tax=RBG_16_Nitrospirae_64_22_curated
RBG_16_NSX_64_22_RBG_16_scaffold_31110_4
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

1582..1803
DNA (222bp) protein (74aa)
Uncharacterized protein n=1 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MJ77_9BACT
hypothetical protein Tax=RBG_16_Nitrospirae_64_22_curated
hypothetical protein
RBG_16_NSX_64_22_RBG_16_scaffold_31110_5
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

1793..3772
DNA (1980bp) protein (660aa)
hypothetical protein Tax=RBG_16_Nitrospirae_64_22_curated
TPR repeat-containing protein id=4476680 bin=GWC2_Nitrospirae_57_13 species=Syntrophobacter fumaroxidans genus=Syntrophobacter taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Nitrospirae_57_13 organism_group=Nitrospirae organism_desc=Same as C1_57_7 and D2_57_8
hypothetical protein
RBG_16_NSX_64_22_RBG_16_scaffold_31110_6
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

3869..4831
DNA (963bp) protein (321aa)
4-diphosphocytidyl-2C-methyl-D-erythritol kinase Tax=RBG_16_Nitrospirae_64_22_curated
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase id=4476683 bin=GWC2_Nitrospirae_57_13 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Nitrospirae_57_13 organism_group=Nitrospirae organism_desc=Same as C1_57_7 and D2_57_8
4-diphosphocytidyl-2C-methyl-D-erythritol kinase
RBG_16_NSX_64_22_RBG_16_scaffold_31110_trna_1
unknown

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4852..4922
DNA (71bp)
transferRNA
RBG_16_NSX_64_22_RBG_16_scaffold_31110_7
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

5318..6259
DNA (942bp) protein (314aa)
prsA; ribose-phosphate pyrophosphokinase (EC:2.7.6.1); K00948 ribose-phosphate pyrophosphokinase [EC:2.7.6.1] Tax=RBG_16_Nitrospirae_64_22_curated
prsA; ribose-phosphate pyrophosphokinase (EC:2.7.6.1)
Ribose-phosphate pyrophosphokinase id=4476687 bin=GWC2_Nitrospirae_57_13 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWC2_Nitrospirae_57_13 organism_group=Nitrospirae organism_desc=Same as C1_57_7 and D2_57_8
RBG_16_NSX_64_22_RBG_16_scaffold_31110_8
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists


6347..7036
DNA (690bp) protein (230aa)
rplY; 50S ribosomal protein L25; K02897 large subunit ribosomal protein L25 Tax=RBG_16_Nitrospirae_64_22_curated
50S ribosomal protein L25 id=4476689 bin=GWC2_Nitrospirae_57_13 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWC2_Nitrospirae_57_13 organism_group=Nitrospirae organism_desc=Same as C1_57_7 and D2_57_8
rplY; 50S ribosomal protein L25
RBG_16_NSX_64_22_RBG_16_scaffold_31110_9
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

7046..7663
DNA (618bp) protein (206aa)
peptidyl-tRNA hydrolase (EC:3.1.1.29); K01056 peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29] Tax=RBG_16_Nitrospirae_64_22_curated
peptidyl-tRNA hydrolase (EC:3.1.1.29)
Peptidyl-tRNA hydrolase n=1 Tax=Eubacterium sp. 14-2 RepID=S0J8T4_9FIRM
RBG_16_NSX_64_22_RBG_16_scaffold_31110_10
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

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7675..9708
DNA (2034bp) protein (678aa)
V-type H(+)-translocating pyrophosphatase; K15987 K(+)-stimulated pyrophosphate-energized sodium pump [EC:3.6.1.1] Tax=RBG_16_Nitrospirae_64_22_curated
V-type H(+)-translocating pyrophosphatase; K15987 K(+)-stimulated pyrophosphate-energized sodium pump [EC:3.6.1.1] id=15193999 bin=GWC2_NOV_55_46 species=Geovibrio thiophilus genus=Geovibrio taxon_order=Deferribacterales taxon_class=Deferribacteres phylum=Deferribacteres tax=GWC2_NOV_55_46 organism_group=Proteobacteria
V-type H(+)-translocating pyrophosphatase (EC:3.6.1.1)
RBG_16_NSX_64_22_RBG_16_scaffold_31110_11
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

9942..11081
DNA (1140bp) protein (380aa)
Ribosome-binding ATPase YchF n=1 Tax=Geobacter sulfurreducens (strain DL-1 / KN400) RepID=D7AFY9_GEOSK
ychF; GTP-dependent translational factor YchF; K06942 Tax=RBG_16_Nitrospirae_64_22_curated
GTP-binding protein
RBG_16_NSX_64_22_RBG_16_scaffold_31110_12
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists


11187..11777
DNA (591bp) protein (197aa)
30S ribosomal protein S6 n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PBE7_9BACT
rpsF; 30S ribosomal protein S6; K02990 small subunit ribosomal protein S6 Tax=RBG_16_Nitrospirae_64_22_curated
rpsF; 30S ribosomal protein S6
RBG_16_NSX_64_22_RBG_16_scaffold_31110_13
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

11764..12189
DNA (426bp) protein (142aa)
ssb; single-stranded DNA-binding protein; K03111 single-strand DNA-binding protein Tax=RBG_16_Nitrospirae_64_22_curated
Single-stranded DNA-binding protein id=1839621 bin=GWD2_Nitrospirae-related_57_8 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWD2_Nitrospirae-related_57_8 organism_group=Nitrospirae organism_desc=Many Proteobacteria hits
ssb; single-stranded DNA-binding protein
RBG_16_NSX_64_22_RBG_16_scaffold_31110_14
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists


12389..12622
DNA (234bp) protein (78aa)
30S ribosomal protein S18 n=1 Tax=Desulfotomaculum hydrothermale Lam5 = DSM 18033 RepID=K8DZ85_9FIRM
rpsR; 30S ribosomal protein S18; K02963 small subunit ribosomal protein S18 Tax=RBG_16_Nitrospirae_64_22_curated
rpsR; 30S ribosomal protein S18
RBG_16_NSX_64_22_RBG_16_scaffold_31110_15
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

12764..13531
DNA (768bp) protein (256aa)
prepilin peptidase; K02654 leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-] Tax=RBG_16_Nitrospirae_64_22_curated
Type 4 prepilin-like proteins leader peptide-processing enzyme id=1703069 bin=GWB2_Nitrospirae_rel_47_37 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWB2_Nitrospirae_rel_47_37 organism_group=Nitrospirae organism_desc=Good + (but may not be Nitrospirae phylum)
prepilin peptidase
RBG_16_NSX_64_22_RBG_16_scaffold_31110_16
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

13535..14857
DNA (1323bp) protein (441aa)
PAS/PAC sensor signal transduction histidine kinase; K02668 two-component system, NtrC family, sensor histidine kinase PilS [EC:2.7.13.3] Tax=RBG_16_Nitrospirae_64_22_curated
PAS/PAC sensor signal transduction histidine kinase id=3730798 bin=GWF2_Nitrospirae_44_13 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
PAS/PAC sensor signal transduction histidine kinase
RBG_16_NSX_64_22_RBG_16_scaffold_31110_17
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

14854..16224
DNA (1371bp) protein (457aa)
two component, sigma54 specific, Fis family transcriptional regulator Tax=RBG_16_Nitrospirae_64_22_curated
Two component, sigma54 specific, transcriptional regulator, Fis family id=3929967 bin=GWF2_Nitrospirae_44_13 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
Fis family transcriptional regulator
RBG_16_NSX_64_22_RBG_16_scaffold_31110_18
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

16474..17319
DNA (846bp) protein (282aa)
hypothetical protein Tax=RBG_16_Nitrospirae_64_22_curated
Uncharacterized protein id=3349900 bin=GWC2_OP3_44_8 species=Thermoanaerobacterium thermosaccharolyticum genus=Thermoanaerobacterium taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_OP3_44_8 organism_group=OP3 (Omnitrophica) organism_desc=Same as GWF2_43_52
hypothetical protein
RBG_16_NSX_64_22_RBG_16_scaffold_31110_19
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

comp(17683..18141)
DNA (459bp) protein (153aa)
Uncharacterized protein n=1 Tax=Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 / STL-6-O1) RepID=I0I7V3_CALAS
hypothetical protein Tax=RBG_16_Nitrospirae_64_22_curated
hypothetical protein
RBG_16_NSX_64_22_RBG_16_scaffold_31110_20
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

comp(18134..18376)
DNA (243bp) protein (81aa)
id=14425880 Tax=RBG_16_Nitrospirae_64_22_curated
id=14425880 bin=bin1_lowGC tax=bin1_lowGC organism_group=Unknown_CP
RBG_16_NSX_64_22_RBG_16_scaffold_31110_21
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

18691..19203
DNA (513bp) protein (171aa)
Tax=RBG_16_Nitrospirae_64_22_curated
RBG_16_NSX_64_22_RBG_16_scaffold_31110_22
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

19386..19979
DNA (594bp) protein (198aa)
Tax=RBG_16_Nitrospirae_64_22_curated
RBG_16_NSX_64_22_RBG_16_scaffold_31110_23
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

19976..20107
DNA (132bp) protein (44aa)
Tax=RBG_16_Nitrospirae_64_22_curated
Displaying 24 items

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