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RBG_16_NSX_64_22_RBG_16_scaffold_3372

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Displaying items 1-30 of 55 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RBG_16_NSX_64_22_RBG_16_scaffold_3372_1
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

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504..668
DNA (165bp) protein (55aa)
Tax=RBG_16_Nitrospirae_64_22_curated
RBG_16_NSX_64_22_RBG_16_scaffold_3372_2
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

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comp(752..1264)
DNA (513bp) protein (171aa)
Acetyltransferase (GNAT) family protein n=1 Tax=Bordetella parapertussis (strain 12822 / ATCC BAA-587 / NCTC 13253) RepID=Q7WCE5_BORPA
acetyltransferase (GNAT) family protein Tax=RBG_16_Nitrospirae_64_22_curated
acetyltransferase (GNAT) family protein
RBG_16_NSX_64_22_RBG_16_scaffold_3372_3
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

comp(1274..1555)
DNA (282bp) protein (94aa)
Uncharacterized protein n=1 Tax=Methylomonas methanica (strain MC09) RepID=G0A1R2_METMM
hypothetical protein Tax=RBG_16_Nitrospirae_64_22_curated
hypothetical protein
RBG_16_NSX_64_22_RBG_16_scaffold_3372_4
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

comp(1770..2768)
DNA (999bp) protein (333aa)
Porphobilinogen synthase (EC:4.2.1.24); K01698 porphobilinogen synthase [EC:4.2.1.24] Tax=RBG_16_Nitrospirae_64_22_curated
Porphobilinogen synthase (EC:4.2.1.24)
delta-aminolevulinic acid dehydratase n=1 Tax=Thermodesulfatator atlanticus RepID=UPI0003B42AAB
RBG_16_NSX_64_22_RBG_16_scaffold_3372_5
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

comp(2761..4302)
DNA (1542bp) protein (514aa)
uroporphyrin-III C-methyltransferase; K13542 uroporphyrinogen III methyltransferase / synthase [EC:2.1.1.107 4.2.1.75] Tax=RBG_16_Nitrospirae_64_22_curated
Uroporphyrin-III C-methyltransferase n=1 Tax=Thermodesulfatator indicus (strain DSM 15286 / JCM 11887 / CIR29812) RepID=F8ACV9_THEID
uroporphyrin-III C-methyltransferase
RBG_16_NSX_64_22_RBG_16_scaffold_3372_6
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

comp(4303..4749)
DNA (447bp) protein (149aa)
hydroxymethylbilane synthase (EC:2.5.1.61); K01749 hydroxymethylbilane synthase [EC:2.5.1.61] Tax=RBG_16_Nitrospirae_64_22_curated
hydroxymethylbilane synthase (EC:2.5.1.61)
Porphobilinogen deaminase id=3467760 bin=GWC2_Proteo_65_14_Ab886 species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Proteo_65_14_Ab886 organism_group=Deltaproteobacteria
RBG_16_NSX_64_22_RBG_16_scaffold_3372_7
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

5716..6060
DNA (345bp) protein (115aa)
uroporphyrinogen decarboxylase (EC:4.1.1.37) Tax=RBG_16_Nitrospirae_64_22_curated
uroporphyrinogen decarboxylase (EC:4.1.1.37)
Uroporphyrinogen decarboxylase n=1 Tax=Paracoccus aminophilus JCM 7686 RepID=S5XVX4_PARAH
RBG_16_NSX_64_22_RBG_16_scaffold_3372_8
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

comp(6126..7550)
DNA (1425bp) protein (475aa)
hemA; glutamyl-tRNA reductase; K02492 glutamyl-tRNA reductase [EC:1.2.1.70] Tax=RBG_16_Nitrospirae_64_22_curated
Glutamyl-tRNA reductase id=4349505 bin=GWC2_Nitrospirae_57_13 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWC2_Nitrospirae_57_13 organism_group=Nitrospirae organism_desc=Same as C1_57_7 and D2_57_8
hemA; glutamyl-tRNA reductase
RBG_16_NSX_64_22_RBG_16_scaffold_3372_9
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

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comp(7563..8378)
DNA (816bp) protein (272aa)
cytochrome c biogenesis protein Tax=RBG_16_Nitrospirae_64_22_curated
Cytochrome c-type biogenesis protein CcsB id=1999158 bin=GWB2_Nitrospirae_rel_47_37 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB2_Nitrospirae_rel_47_37 organism_group=Nitrospirae organism_desc=Good + (but may not be Nitrospirae phylum)
ResC/HemX-like cytochrome c biogenesis membrane protein
RBG_16_NSX_64_22_RBG_16_scaffold_3372_10
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

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comp(8505..9404)
DNA (900bp) protein (300aa)
Transcriptional regulator, LysR family n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HYC1_9BACT
LysR family transcriptional regulator Tax=RBG_16_Nitrospirae_64_22_curated
LysR family transcriptional regulator
RBG_16_NSX_64_22_RBG_16_scaffold_3372_11
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

9501..10901
DNA (1401bp) protein (467aa)
isopropylmalate isomerase large subunit (EC:4.2.1.33); K01703 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35] Tax=RBG_16_Nitrospirae_64_22_curated
isopropylmalate isomerase large subunit (EC:4.2.1.33)
3-isopropylmalate dehydratase large subunit n=1 Tax=Leptospirillum sp. Group IV 'UBA BS' RepID=T0Z640_9BACT
RBG_16_NSX_64_22_RBG_16_scaffold_3372_12
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

10901..11515
DNA (615bp) protein (205aa)
3-isopropylmalate dehydratase small subunit n=1 Tax=Leptospirillum sp. Group IV 'UBA BS' RepID=T0Z806_9BACT
leuD; 3-isopropylmalate dehydratase small subunit Tax=RBG_16_Nitrospirae_64_22_curated
3-isopropylmalate dehydratase
RBG_16_NSX_64_22_RBG_16_scaffold_3372_13
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

11528..12478
DNA (951bp) protein (317aa)
ferritin, CCC1 Tax=RBG_16_Nitrospirae_64_22_curated
hypothetical protein id=14626958 bin=bin7_NC10_sister species=Metallosphaera cuprina genus=Metallosphaera taxon_order=Sulfolobales taxon_class=Thermoprotei phylum=Crenarchaeota tax=bin7_NC10_sister organism_group=NC10
ferritin, CCC1
RBG_16_NSX_64_22_RBG_16_scaffold_3372_14
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

12499..13680
DNA (1182bp) protein (394aa)
hypothetical protein Tax=RBG_16_Nitrospirae_64_22_curated
Uncharacterized protein id=3259551 bin=GWA1_Deltaproteobacteria_52_35 species=Pedosphaera parvula genus=Pedosphaera taxon_order=Verrucomicrobiales taxon_class=Verrucomicrobiae phylum=Verrucomicrobia tax=GWA1_Deltaproteobacteria_52_35 organism_group=Deltaproteobacteria organism_desc=Good + Candidate for further analysis!
hypothetical protein
RBG_16_NSX_64_22_RBG_16_scaffold_3372_15
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

13770..14465
DNA (696bp) protein (232aa)
Uncharacterized protein n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6B6N4_9PROT
hypothetical protein Tax=RBG_16_Nitrospirae_64_22_curated
hypothetical protein
RBG_16_NSX_64_22_RBG_16_scaffold_3372_trna_1
unknown

Not on your lists

14700..14772
DNA (73bp)
transferRNA
RBG_16_NSX_64_22_RBG_16_scaffold_3372_16
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

15205..15405
DNA (201bp) protein (67aa)
Cold-shock DNA-binding domain protein n=4 Tax=Anaeromyxobacter RepID=B4UH01_ANASK id=5223491 bin=16ft_combo_ws3_JS1 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
cold-shock DNA-binding protein family protein; K03704 cold shock protein (beta-ribbon, CspA family) Tax=RBG_16_Nitrospirae_64_22_curated
cold-shock protein
RBG_16_NSX_64_22_RBG_16_scaffold_3372_17
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

15550..17292
DNA (1743bp) protein (581aa)
Tax=RBG_16_Nitrospirae_64_22_curated
RBG_16_NSX_64_22_RBG_16_scaffold_3372_18
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

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17449..17655
DNA (207bp) protein (69aa)
Plasmid stabilization system n=1 Tax=Cyanothece sp. (strain PCC 7822) RepID=E0UBE8_CYAP2
plasmid stabilization system Tax=RBG_16_Nitrospirae_64_22_curated
plasmid stabilization system
RBG_16_NSX_64_22_RBG_16_scaffold_3372_19
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

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17671..17895
DNA (225bp) protein (75aa)
Phd_YefM Tax=RBG_16_Nitrospirae_64_22_curated
Putative uncharacterized protein id=4033205 bin=GWC2_Syntrophobacterales_56_13 species=Cylindrospermum stagnale genus=Cylindrospermum taxon_order=Nostocales taxon_class=unknown phylum=Cyanobacteria tax=GWC2_Syntrophobacterales_56_13 organism_group=Deltaproteobacteria organism_desc=Good +
Phd_YefM
RBG_16_NSX_64_22_RBG_16_scaffold_3372_20
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

comp(18218..18979)
DNA (762bp) protein (254aa)
Putative uncharacterized protein n=1 Tax=Anaeromyxobacter dehalogenans (strain 2CP-C) RepID=Q2IQ16_ANADE
hypothetical protein Tax=RBG_16_Nitrospirae_64_22_curated
hypothetical protein
RBG_16_NSX_64_22_RBG_16_scaffold_3372_21
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

comp(19105..19962)
DNA (858bp) protein (286aa)
bifunctional hydroxy-methylpyrimidine kinase/hydroxy-phosphomethylpyrimidine kinase (EC:2.7.4.7) Tax=RBG_16_Nitrospirae_64_22_curated
bifunctional hydroxy-methylpyrimidine kinase/hydroxy-phosphomethylpyrimidine kinase (EC:2.7.4.7)
hypothetical protein n=1 Tax=Elioraea tepidiphila RepID=UPI00035CD8AF
RBG_16_NSX_64_22_RBG_16_scaffold_3372_22
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

comp(19979..20935)
DNA (957bp) protein (319aa)
methyltransferase Tax=RBG_16_Nitrospirae_64_22_curated
Methyltransferase id=4788693 bin=GWC2_CP_Nitrospirae-rel_42_7 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_CP_Nitrospirae-rel_42_7 organism_group=Nitrospirae
methyltransferase
RBG_16_NSX_64_22_RBG_16_scaffold_3372_23
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

comp(20932..21660)
DNA (729bp) protein (243aa)
bstVIR; type-2 restriction enzyme BstVI (R.BstVI) (Type II restriction enzyme BstVI) (Endonuclease BstVI) (EC:3.1.21.4) Tax=RBG_16_Nitrospirae_64_22_curated
bstVIR; type-2 restriction enzyme BstVI (R.BstVI) (Type II restriction enzyme BstVI) (Endonuclease BstVI) (EC:3.1.21.4)
Type-2 restriction enzyme BstVI (R.BstVI) (Type II restriction enzyme BstVI) (Endonuclease BstVI) n=1 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MMJ7_9BACT
RBG_16_NSX_64_22_RBG_16_scaffold_3372_24
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

comp(21691..22314)
DNA (624bp) protein (208aa)
thiE; thiamine-phosphate pyrophosphorylase (EC:2.5.1.3); K00788 thiamine-phosphate pyrophosphorylase [EC:2.5.1.3] Tax=RBG_16_Nitrospirae_64_22_curated
Thiamine-phosphate synthase id=1742943 bin=GWD2_Nitrospirae-related_57_8 species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Nitrospirae-related_57_8 organism_group=Nitrospirae organism_desc=Many Proteobacteria hits
tenI; carboxythiazole phosphate tautomerase
RBG_16_NSX_64_22_RBG_16_scaffold_3372_25
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

comp(22307..23098)
DNA (792bp) protein (264aa)
thiG; thiazole biosynthesis protein ThiG; K03149 thiamine biosynthesis ThiG Tax=RBG_16_Nitrospirae_64_22_curated
Thiazole synthase id=2284062 bin=GWB2_Nitrospirae_rel_47_37 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWB2_Nitrospirae_rel_47_37 organism_group=Nitrospirae organism_desc=Good + (but may not be Nitrospirae phylum)
thiG; thiazole biosynthesis protein ThiG
RBG_16_NSX_64_22_RBG_16_scaffold_3372_26
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

comp(23246..23449)
DNA (204bp) protein (68aa)
Uncharacterized protein n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6G1A0_9DELT
sulfur carrier protein ThiS Tax=RBG_16_Nitrospirae_64_22_curated
thiamine biosynthesis protein ThiS
RBG_16_NSX_64_22_RBG_16_scaffold_3372_27
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

comp(23446..24687)
DNA (1242bp) protein (414aa)
hypothetical protein n=1 Tax=Uliginosibacterium gangwonense RepID=UPI00035DE20A
thiH; thiamine biosynthesis protein ThiH; K03150 thiamine biosynthesis ThiH Tax=RBG_16_Nitrospirae_64_22_curated
thiH; thiamine biosynthesis protein ThiH
RBG_16_NSX_64_22_RBG_16_scaffold_3372_28
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

comp(24850..25707)
DNA (858bp) protein (286aa)
cAMP-binding protein n=1 Tax=Myxococcus sp. (contaminant ex DSM 436) RepID=U2SJV7_9DELT
cyclic nucleotide-binding domain-containing protein Tax=RBG_16_Nitrospirae_64_22_curated
cyclic nucleotide-binding domain-containing protein
RBG_16_NSX_64_22_RBG_16_scaffold_3372_29
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

comp(25806..26162)
DNA (357bp) protein (119aa)
preprotein translocase subunit SecG; K03075 preprotein translocase subunit SecG Tax=RBG_16_Nitrospirae_64_22_curated
Protein translocase subunit secG id=3327555 bin=GWC2_Geobacteraceae_55_20 species=Pelobacter propionicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Geobacteraceae_55_20 organism_group=Deltaproteobacteria
preprotein translocase subunit SecG
Displaying items 1-30 of 55 in total

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