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RBG_16_NSX_64_22_RBG_16_scaffold_18715

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Displaying 19 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RBG_16_NSX_64_22_RBG_16_scaffold_18715_1
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

comp(2..202)
DNA (201bp) protein (67aa)
N-terminal methylation Tax=RBG_16_Nitrospirae_64_22_curated
Type IV pilin id=3448873 bin=GWC2_CP_Nitrospirae-rel_42_7 species=uncultured Nitrospirae bacterium MY3-11A genus=unknown taxon_order=unknown taxon_class=unknown phylum=Nitrospirae tax=GWC2_CP_Nitrospirae-rel_42_7 organism_group=Nitrospirae
pilA-N; hypothetical protein
RBG_16_NSX_64_22_RBG_16_scaffold_18715_2
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

comp(334..882)
DNA (549bp) protein (183aa)
Pilus biogenesis protein tapA Tax=RBG_16_Nitrospirae_64_22_curated
Fimbrial protein id=2537489 bin=GWC2_CP_Nitrospirae-rel_42_7 species=uncultured Nitrospirae bacterium MY3-11A genus=unknown taxon_order=unknown taxon_class=unknown phylum=Nitrospirae tax=GWC2_CP_Nitrospirae-rel_42_7 organism_group=Nitrospirae
Pilus biogenesis protein tapA
RBG_16_NSX_64_22_RBG_16_scaffold_18715_3
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

comp(1035..1544)
DNA (510bp) protein (170aa)
prepilin-type N-terminal cleavage/methylation domain Tax=RBG_16_Nitrospirae_64_22_curated
Fimbrial protein id=2537489 bin=GWC2_CP_Nitrospirae-rel_42_7 species=uncultured Nitrospirae bacterium MY3-11A genus=unknown taxon_order=unknown taxon_class=unknown phylum=Nitrospirae tax=GWC2_CP_Nitrospirae-rel_42_7 organism_group=Nitrospirae
type IV pilin
RBG_16_NSX_64_22_RBG_16_scaffold_18715_4
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

comp(1829..3241)
DNA (1413bp) protein (471aa)
pilR; transcriptional regulatory protein pilR; K02667 two-component system, NtrC family, response regulator PilR Tax=RBG_16_Nitrospirae_64_22_curated
Transcriptional regulatory protein pilR id=1935132 bin=GWD2_Nitrospirae-related_57_8 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWD2_Nitrospirae-related_57_8 organism_group=Nitrospirae organism_desc=Many Proteobacteria hits
pilR; transcriptional regulatory protein pilR
RBG_16_NSX_64_22_RBG_16_scaffold_18715_5
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

comp(3608..4021)
DNA (414bp) protein (138aa)
hypothetical protein n=1 Tax=Geopsychrobacter electrodiphilus RepID=UPI000375344B
hypothetical protein Tax=RBG_16_Nitrospirae_64_22_curated
hypothetical protein
RBG_16_NSX_64_22_RBG_16_scaffold_18715_6
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

comp(4034..4411)
DNA (378bp) protein (126aa)
Ribonuclease VapC n=1 Tax=uncultured bacterium RepID=K1ZTC9_9BACT
twitching motility protein PilT; K07062 Tax=RBG_16_Nitrospirae_64_22_curated
twitching motility protein PilT
RBG_16_NSX_64_22_RBG_16_scaffold_18715_7
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

comp(4408..4620)
DNA (213bp) protein (71aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K1ZAP0_9BACT
Uncharacterized protein Tax=RBG_16_Nitrospirae_64_22_curated
RBG_16_NSX_64_22_RBG_16_scaffold_18715_8
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

comp(4652..4930)
DNA (279bp) protein (93aa)
prevent-host-death family protein Tax=RBG_16_Nitrospirae_64_22_curated
Prevent-host-death family protein id=3469915 bin=GWF2_Ignavibacteria_35_20 species=unknown genus=unknown taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_Ignavibacteria_35_20 organism_group=Ignavibacteria
prevent-host-death family protein
RBG_16_NSX_64_22_RBG_16_scaffold_18715_9
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

comp(5041..5271)
DNA (231bp) protein (77aa)
Putative uncharacterized protein n=1 Tax=uncultured bacterium RepID=Q93DV1_9BACT
addiction module protein Tax=RBG_16_Nitrospirae_64_22_curated
addiction module protein
RBG_16_NSX_64_22_RBG_16_scaffold_18715_10
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

comp(5485..7206)
DNA (1722bp) protein (574aa)
signal transduction histidine kinase, nitrogen specific, NtrB (EC:2.7.3.-); K02668 two-component system, NtrC family, sensor histidine kinase PilS [EC:2.7.13.3] Tax=RBG_16_Nitrospirae_64_22_curated
Sensor histidine kinase PilS, PAS domain-containing n=2 Tax=Geobacter metallireducens RepID=Q39VU4_GEOMG
pilS; sensor histidine kinase PilS, PAS domain-containing
RBG_16_NSX_64_22_RBG_16_scaffold_18715_11
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

comp(7361..8578)
DNA (1218bp) protein (406aa)
pilC; type 4 fimbrial assembly protein pilC Tax=RBG_16_Nitrospirae_64_22_curated
Type II secretion system protein id=4939664 bin=GWC2_CP_Nitrospirae-rel_42_7 species=Pelobacter propionicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_CP_Nitrospirae-rel_42_7 organism_group=Nitrospirae
pilC; type 4 fimbrial assembly protein pilC
RBG_16_NSX_64_22_RBG_16_scaffold_18715_12
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

comp(8734..9846)
DNA (1113bp) protein (371aa)
twitching motility protein; K02669 twitching motility protein PilT Tax=RBG_16_Nitrospirae_64_22_curated
Twitching motility protein id=3721002 bin=GWF2_Nitrospirae_44_13 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
twitching motility protein
RBG_16_NSX_64_22_RBG_16_scaffold_18715_13
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

comp(9954..11654)
DNA (1701bp) protein (567aa)
pilB; type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB; K02652 type IV pilus assembly protein PilB Tax=RBG_16_Nitrospirae_64_22_curated
Type IV-A pilus assembly ATPase PilB id=4139314 bin=GWC2_Nitrospirae_57_13 species=unknown genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Nitrospirae_57_13 organism_group=Nitrospirae organism_desc=Same as C1_57_7 and D2_57_8
type II secretion system protein E
RBG_16_NSX_64_22_RBG_16_scaffold_18715_14
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

comp(11872..12747)
DNA (876bp) protein (292aa)
shikimate 5-dehydrogenase (EC:1.1.1.25) Tax=RBG_16_Nitrospirae_64_22_curated
aroE; shikimate 5-dehydrogenase (EC:1.1.1.25)
Shikimate dehydrogenase id=4757512 bin=GWA2_OP3_52_12 species=Paenibacillus vortex genus=Paenibacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWA2_OP3_52_12 organism_group=OP3 (Omnitrophica) organism_desc=Genome is FULL of scaffolding errors
RBG_16_NSX_64_22_RBG_16_scaffold_18715_15
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

comp(12738..14186)
DNA (1449bp) protein (483aa)
Uncharacterized protein n=2 Tax=root RepID=I0IMQ6_LEPFC
hypothetical protein Tax=RBG_16_Nitrospirae_64_22_curated
hypothetical protein rbh
RBG_16_NSX_64_22_RBG_16_scaffold_18715_16
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

comp(14204..14854)
DNA (651bp) protein (217aa)
Tax=RBG_16_Nitrospirae_64_22_curated
RBG_16_NSX_64_22_RBG_16_scaffold_18715_17
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

comp(14851..15939)
DNA (1089bp) protein (363aa)
permease Tax=RBG_16_Nitrospirae_64_22_curated
Uncharacterized protein id=4069966 bin=GWC2_Pelobacter_58_13 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Pelobacter_58_13 organism_group=Deltaproteobacteria organism_desc=Good +
permease
RBG_16_NSX_64_22_RBG_16_scaffold_18715_18
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

comp(15932..16489)
DNA (558bp) protein (186aa)
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (EC:2.7.8.5); K00995 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase [EC:2.7.8.5] Tax=RBG_16_Nitrospirae_64_22_cur
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (EC:2.7.8.5)
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase id=4306442 bin=GWC2_Nitrospirae-rel_56_14 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Nitrospirae-rel_56_14 organism_group=Nitrospirae organism_desc=Pretty good; based on recA
RBG_16_NSX_64_22_RBG_16_scaffold_18715_19
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

comp(16486..17544)
DNA (1059bp) protein (353aa)
yhaM; 3'-to-5' exonuclease YhaM; K03698 CMP-binding protein Tax=RBG_16_Nitrospirae_64_22_curated
Metal dependent phosphohydrolase id=4825674 bin=GWC2_Nitrospirae_57_13 species=Geobacter lovleyi genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Nitrospirae_57_13 organism_group=Nitrospirae organism_desc=Same as C1_57_7 and D2_57_8
HD family phosphohydrolase
Displaying 19 items

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