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RBG_16_NSX_64_22_RBG_16_scaffold_8236

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Displaying 13 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RBG_16_NSX_64_22_RBG_16_scaffold_8236_1
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

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2..121
DNA (120bp) protein (40aa)
Signal peptidase I Tax=RBG_16_Nitrospirae_64_22_curated
Signal peptidase I id=2076851 bin=GWD2_Deltaproteobacteria_55_8 species=Desulfocapsa sulfexigens genus=Desulfocapsa taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
RBG_16_NSX_64_22_RBG_16_scaffold_8236_2
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

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674..1231
DNA (558bp) protein (186aa)
pyrR; bifunctional pyrimidine operon regulatory protein/uracil phosphoribosyltransferase (EC:2.4.2.9) Tax=RBG_16_Nitrospirae_64_22_curated
pyrR; bifunctional pyrimidine operon regulatory protein/uracil phosphoribosyltransferase (EC:2.4.2.9) id=14430882 bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin3_NC10 organism_group=NC10
pyrR; bifunctional pyrimidine operon regulatory protein/uracil phosphoribosyltransferase (EC:2.4.2.9)
RBG_16_NSX_64_22_RBG_16_scaffold_8236_3
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

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1228..2154
DNA (927bp) protein (309aa)
aspartate carbamoyltransferase (EC:2.1.3.2); K00609 aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2] Tax=RBG_16_Nitrospirae_64_22_curated
pyrB; aspartate carbamoyltransferase (EC:2.1.3.2)
Aspartate carbamoyltransferase id=4510914 bin=GWC2_Nitrospirae_57_13 species=Desulfotomaculum kuznetsovii genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Nitrospirae_57_13 organism_group=Nitrospirae organism_desc=Same as C1_57_7 and D2_57_8
RBG_16_NSX_64_22_RBG_16_scaffold_8236_4
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

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2151..3437
DNA (1287bp) protein (429aa)
pyrC; dihydroorotase (EC:3.5.2.3); K01465 dihydroorotase [EC:3.5.2.3] Tax=RBG_16_Nitrospirae_64_22_curated
pyrC; dihydroorotase (EC:3.5.2.3)
Dihydroorotase id=4510916 bin=GWC2_Nitrospirae_57_13 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWC2_Nitrospirae_57_13 organism_group=Nitrospirae organism_desc=Same as C1_57_7 and D2_57_8
RBG_16_NSX_64_22_RBG_16_scaffold_8236_5
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

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3430..4563
DNA (1134bp) protein (378aa)
carA; carbamoyl phosphate synthase small subunit; K01956 carbamoyl-phosphate synthase small subunit [EC:6.3.5.5] Tax=RBG_16_Nitrospirae_64_22_curated
carA; carbamoyl phosphate synthetase, glutamine amidotransferase small subunit (EC:6.3.5.5) id=14625175 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
carbamoyl phosphate synthase small subunit
RBG_16_NSX_64_22_RBG_16_scaffold_8236_6
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

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4550..7771
DNA (3222bp) protein (1074aa)
carB; carbamoyl-phosphate synthase, large subunit lipoprotein, glutamine-dependent; K01955 carbamoyl-phosphate synthase large subunit [EC:6.3.5.5] Tax=RBG_16_Nitrospirae_64_22_curated
carB; carbamoyl phosphate synthase large subunit (EC:6.3.5.5)
Carbamoyl-phosphate synthase large chain id=4510920 bin=GWC2_Nitrospirae_57_13 species=unknown genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Nitrospirae_57_13 organism_group=Nitrospirae organism_desc=Same as C1_57_7 and D2_57_8
RBG_16_NSX_64_22_RBG_16_scaffold_8236_7
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

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7768..8253
DNA (486bp) protein (162aa)
transcription elongation factor GreA; K03624 transcription elongation factor GreA Tax=RBG_16_Nitrospirae_64_22_curated
Transcription elongation factor GreA id=2299843 bin=GWB2_Nitrospirae_rel_47_37 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWB2_Nitrospirae_rel_47_37 organism_group=Nitrospirae organism_desc=Good + (but may not be Nitrospirae phylum)
transcription elongation factor GreA
RBG_16_NSX_64_22_RBG_16_scaffold_8236_8
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

8250..9029
DNA (780bp) protein (260aa)
Dihydroorotate dehydrogenase B (NAD(+)), electron transfer subunit n=1 Tax=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) RepID=Q3A513_PELCD
2-polyprenylphenol 6-hydroxylase; K02823 dihydroorotate dehydrogenase electron transfer subunit Tax=RBG_16_Nitrospirae_64_22_curated
pyrK; dihydroorotate dehydrogenase, electron transfer subunit
RBG_16_NSX_64_22_RBG_16_scaffold_8236_9
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

9029..9994
DNA (966bp) protein (322aa)
dihydroorotate dehydrogenase protein (EC:1.3.98.1); K00226 dihydroorotate dehydrogenase (fumarate) [EC:1.3.98.1] Tax=RBG_16_Nitrospirae_64_22_curated
dihydroorotate dehydrogenase protein (EC:1.3.98.1)
Dihydroorotate dehydrogenase id=4083227 bin=GWC2_Nitrospirae-rel_56_14 species=Desulfotomaculum kuznetsovii genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Nitrospirae-rel_56_14 organism_group=Nitrospirae organism_desc=Pretty good; based on recA
RBG_16_NSX_64_22_RBG_16_scaffold_8236_10
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

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9996..10814
DNA (819bp) protein (273aa)
hypothetical protein; K09134 hypothetical protein Tax=RBG_16_Nitrospirae_64_22_curated
Putative uncharacterized protein id=4127848 bin=GWF2_Nitrospirae_44_13 species=Candidatus Koribacter versatilis genus=Candidatus Koribacter taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
hypothetical protein
RBG_16_NSX_64_22_RBG_16_scaffold_8236_11
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

comp(10836..11660)
DNA (825bp) protein (275aa)
Membrane protease subunit, stomatin/prohibitin n=1 Tax=Desulfitobacterium dehalogenans (strain ATCC 51507 / DSM 9161 / JW/IU-DC1) RepID=I4A593_DESDJ
hypothetical protein Tax=RBG_16_Nitrospirae_64_22_curated
hypothetical protein
RBG_16_NSX_64_22_RBG_16_scaffold_8236_12
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

comp(11730..12881)
DNA (1152bp) protein (384aa)
Tax=RBG_16_Nitrospirae_64_22_curated
RBG_16_NSX_64_22_RBG_16_scaffold_8236_13
unknown

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13346..13408
DNA (63bp) protein (21aa)

This feature has no annotations

Displaying 13 items

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