ggKbase home page

RBG_16_WS3_71_46_RBG_16_scaffold_272

Search features with annotation key words

Displaying items 1-30 of 86 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RBG_16_WS3_71_46_RBG_16_scaffold_272_1
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(2..607)
DNA (606bp) protein (202aa)
Ni,Fe-hydrogenase III small subunit Tax=RBG_16_RIF_WS3X_71_46_curated
Ni,Fe-hydrogenase III small subunit id=24535014 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Thioalkalivibrio thiocyanodenitrificans genus=Thioalkalivibrio taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
Ni,Fe-hydrogenase III small subunit
RBG_16_WS3_71_46_RBG_16_scaffold_272_2
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(734..2341)
DNA (1608bp) protein (536aa)
Ni,Fe-hydrogenase III large subunit n=1 Tax=Desulfosporosinus youngiae DSM 17734 RepID=H5XT90_9FIRM
Ni,Fe-hydrogenase III large subunit Tax=RBG_16_RIF_WS3X_71_46_curated
Ni,Fe-hydrogenase III large subunit
RBG_16_WS3_71_46_RBG_16_scaffold_272_3
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(2338..3792)
DNA (1455bp) protein (485aa)
formate hydrogenlyase subunit 3/multisubunit Na+/H+ antiporter, MnhD subunit; K12141 hydrogenase-4 component F [EC:1.-.-.-] Tax=RBG_16_RIF_WS3X_71_46_curated
formate hydrogenlyase subunit 3/multisubunit Na+/H+ antiporter, MnhD subunit; K12141 hydrogenase-4 component F [EC:1.-.-.-] id=24535011 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=unknown taxon_order=unknown taxon_class=Methanomicrobia phylum=Euryarchaeota tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
formate hydrogenlyase subunit 3/multisubunit Na+/H+ antiporter, MnhD subunit
RBG_16_WS3_71_46_RBG_16_scaffold_272_4
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(3806..4483)
DNA (678bp) protein (226aa)
putative formate hydrogenlyase, membrane subunit; K12140 hydrogenase-4 component E [EC:1.-.-.-] id=24535010 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=unknown taxon_order=unknown taxon_class=Methanomicrobia phylum=Euryarchaeota tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
putative formate hydrogenlyase, membrane subunit; K12140 hydrogenase-4 component E [EC:1.-.-.-] Tax=RBG_16_RIF_WS3X_71_46_curated
putative formate hydrogenlyase, membrane subunit
RBG_16_WS3_71_46_RBG_16_scaffold_272_5
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(4480..5418)
DNA (939bp) protein (313aa)
putative formate hydrogenlyase, membrane subunit id=24535009 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
putative formate hydrogenlyase, membrane subunit Tax=RBG_16_RIF_WS3X_71_46_curated
putative formate hydrogenlyase, membrane subunit
RBG_16_WS3_71_46_RBG_16_scaffold_272_6
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(5420..7477)
DNA (2058bp) protein (686aa)
NADH dehydrogenase (quinone) (EC:1.6.99.5) Tax=RBG_16_RIF_WS3X_71_46_curated
NADH dehydrogenase (quinone) (EC:1.6.99.5) id=24535008 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=unknown taxon_order=unknown taxon_class=Opitutae phylum=Verrucomicrobia tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
NADH dehydrogenase (quinone) (EC:1.6.99.5)
RBG_16_WS3_71_46_RBG_16_scaffold_272_7
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(7761..8783)
DNA (1023bp) protein (341aa)
transcriptional regulator n=1 Tax=Ornithinimicrobium pekingense RepID=UPI0003B4A0F6
MerR family transcriptional regulator Tax=RBG_16_RIF_WS3X_71_46_curated
MerR family transcriptional regulator
RBG_16_WS3_71_46_RBG_16_scaffold_272_8
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

9016..9792
DNA (777bp) protein (259aa)
short-chain dehydrogenase (EC:1.1.1.-)
Uncharacterized protein n=1 Tax=Strigamia maritima RepID=T1IKK2_STRMM
similar to 3-hydroxybutyrate dehydrogenase type 2 Tax=RBG_16_RIF_WS3X_71_46_curated
RBG_16_WS3_71_46_RBG_16_scaffold_272_9
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(9985..10653)
DNA (669bp) protein (223aa)
id=5223713 Tax=RBG_16_RIF_WS3X_71_46_curated
id=5223713 bin=16ft_combo_ws3_JS1 species=16ft_combo_ws3 genus=16ft_combo_ws3 taxon_order=16ft_combo_ws3 taxon_class=16ft_combo_ws3 phylum=WS3 tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
RBG_16_WS3_71_46_RBG_16_scaffold_272_10
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(10650..12764)
DNA (2115bp) protein (705aa)
Discoidin domain protein n=1 Tax=Patulibacter sp. I11 RepID=H0E870_9ACTN id=5225488 bin=16ft_combo_ws3_JS1 species=Patulibacter medicamentivorans genus=Patulibacter taxon_order=Solirubrobacterales taxon_class=Actinobacteria phylum=Actinobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
hypothetical protein Tax=RBG_16_RIF_WS3X_71_46_curated
hypothetical protein
RBG_16_WS3_71_46_RBG_16_scaffold_272_11
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

12881..13708
DNA (828bp) protein (276aa)
Tax=RBG_16_RIF_WS3X_71_46_curated
RBG_16_WS3_71_46_RBG_16_scaffold_272_12
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

13881..14693
DNA (813bp) protein (271aa)
hypothetical protein Tax=RBG_16_RIF_WS3X_71_46_curated
hypothetical protein
hypothetical protein id=5241271 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
RBG_16_WS3_71_46_RBG_16_scaffold_272_13
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

14743..15321
DNA (579bp) protein (193aa)
hypothetical protein; K03744 LemA protein Tax=RBG_16_RIF_WS3X_71_46_curated
LemA id=3259669 bin=GWA1_Deltaproteobacteria_52_35 species=Methylobacillus flagellatus genus=Methylobacillus taxon_order=Methylophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA1_Deltaproteobacteria_52_35 organism_group=Deltaproteobacteria organism_desc=Good + Candidate for further analysis!
LemA family protein
RBG_16_WS3_71_46_RBG_16_scaffold_272_14
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

15471..16613
DNA (1143bp) protein (381aa)
oxidoreductase domain-containing protein Tax=RBG_16_RIF_WS3X_71_46_curated
oxidoreductase domain-containing protein id=16790124 bin=RBG_16_Aminicenantes_63_16_plus species=Methanothermococcus okinawensis genus=Methanothermococcus taxon_order=Methanococcales taxon_class=Methanococci phylum=Euryarchaeota tax=RBG_16_Aminicenantes_63_16_plus organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate Resolve three similar GC_Cov Aminicentantes bins with ESOM
oxidoreductase
RBG_16_WS3_71_46_RBG_16_scaffold_272_15
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

16610..17488
DNA (879bp) protein (293aa)
Tax=RBG_16_RIF_WS3X_71_46_curated
RBG_16_WS3_71_46_RBG_16_scaffold_272_16
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(17677..20151)
DNA (2475bp) protein (825aa)
lon; ATP-dependent protease La (EC:3.4.21.53); K01338 ATP-dependent Lon protease [EC:3.4.21.53] Tax=RBG_16_RIF_WS3X_71_46_curated
lon; ATP-dependent protease La (EC:3.4.21.53)
Lon protease n=1 Tax=Dictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12) RepID=LON_DICT6
RBG_16_WS3_71_46_RBG_16_scaffold_272_17
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(20201..20635)
DNA (435bp) protein (145aa)
Heat shock protein Hsp20 n=1 Tax=Leptospirillum sp. Group IV 'UBA BS' RepID=T0Z8S5_9BACT
small heat shock protein Tax=RBG_16_RIF_WS3X_71_46_curated
small heat shock protein
RBG_16_WS3_71_46_RBG_16_scaffold_272_18
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(20724..20906)
DNA (183bp) protein (61aa)
Tax=RBG_16_RIF_WS3X_71_46_curated
RBG_16_WS3_71_46_RBG_16_scaffold_272_19
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(21342..22670)
DNA (1329bp) protein (443aa)
Beta-glucosidase B (EC:3.2.1.21); K05350 beta-glucosidase [EC:3.2.1.21] Tax=RBG_16_RIF_WS3X_71_46_curated
Beta-glucosidase B (EC:3.2.1.21)
Beta-glucosidase B n=1 Tax=Stigmatella aurantiaca (strain DW4/3-1) RepID=Q091M8_STIAD
RBG_16_WS3_71_46_RBG_16_scaffold_272_20
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

22855..23751
DNA (897bp) protein (299aa)
alpha/beta hydrolase n=1 Tax=Agrococcus pavilionensis RepID=UPI0003909E89
alpha/beta hydrolase Tax=RBG_16_RIF_WS3X_71_46_curated
alpha/beta hydrolase
RBG_16_WS3_71_46_RBG_16_scaffold_272_21
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

23786..25063
DNA (1278bp) protein (426aa)
Arabinose efflux permease family protein n=1 Tax=Desulfovibrio sp. U5L RepID=I2Q110_9DELT
major facilitator superfamily transporter Tax=RBG_16_RIF_WS3X_71_46_curated
MFS transporter
RBG_16_WS3_71_46_RBG_16_scaffold_272_22
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(25106..26122)
DNA (1017bp) protein (339aa)
crtB1; phytoene synthase; K00801 farnesyl-diphosphate farnesyltransferase [EC:2.5.1.21] Tax=RBG_16_RIF_WS3X_71_46_curated
Phytoene synthase n=1 Tax=Cystobacter fuscus DSM 2262 RepID=S9PNX6_9DELT
crtB1; phytoene synthase
RBG_16_WS3_71_46_RBG_16_scaffold_272_23
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

26224..28047
DNA (1824bp) protein (608aa)
hypothetical protein Tax=RBG_16_RIF_WS3X_71_46_curated
hypothetical protein id=24489202 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Lamprocystis purpurea genus=Lamprocystis taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
RBG_16_WS3_71_46_RBG_16_scaffold_272_24
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

28303..29241
DNA (939bp) protein (313aa)
ctaA; cytochrome oxidase assembly protein; K02259 cytochrome c oxidase assembly protein subunit 15 id=24489203 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Leptospira inadai genus=Leptospira taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
ctaA; cytochrome oxidase assembly protein; K02259 cytochrome c oxidase assembly protein subunit 15 Tax=RBG_16_RIF_WS3X_71_46_curated
ctaA; cytochrome oxidase assembly protein
RBG_16_WS3_71_46_RBG_16_scaffold_272_25
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

29238..30140
DNA (903bp) protein (301aa)
protoheme IX farnesyltransferase (Heme O synthase) (HemeB farnesyltransferase) (EC:2.5.1.-); K02301 protoheme IX farnesyltransferase [EC:2.5.1.-] id=24489204 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Thermomicrobium roseum genus=Thermomicrobium taxon_order=Thermomicrobiales taxon_class=Thermomicrobia phylum=Chloroflexi tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
protoheme IX farnesyltransferase (Heme O synthase) (HemeB farnesyltransferase) (EC:2.5.1.-); K02301 protoheme IX farnesyltransferase [EC:2.5.1.-] Tax=RBG_16_RIF_WS3X_71_46_curated
protoheme IX farnesyltransferase (Heme O synthase) (HemeB farnesyltransferase) (EC:2.5.1.-)
RBG_16_WS3_71_46_RBG_16_scaffold_272_26
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

30274..31311
DNA (1038bp) protein (346aa)
cytochrome c oxidase subunit II (EC:1.9.3.1); K02275 cytochrome c oxidase subunit II [EC:1.9.3.1] id=24489205 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
cytochrome c oxidase subunit II (EC:1.9.3.1); K02275 cytochrome c oxidase subunit II [EC:1.9.3.1] Tax=RBG_16_RIF_WS3X_71_46_curated
cytochrome c oxidase subunit II (EC:1.9.3.1)
RBG_16_WS3_71_46_RBG_16_scaffold_272_27
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

31333..33138
DNA (1806bp) protein (602aa)
ctaD; cytochrome c oxidase subunit I (EC:1.9.3.1); K02274 cytochrome c oxidase subunit I [EC:1.9.3.1] Tax=RBG_16_RIF_WS3X_71_46_curated
ctaD; cytochrome c oxidase subunit I (EC:1.9.3.1); K02274 cytochrome c oxidase subunit I [EC:1.9.3.1] id=24489206 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Chloroflexi tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
ctaD; cytochrome c oxidase subunit I (EC:1.9.3.1)
RBG_16_WS3_71_46_RBG_16_scaffold_272_28
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

33171..33773
DNA (603bp) protein (201aa)
cytochrome c oxidase subunit III; K02299 cytochrome o ubiquinol oxidase subunit III [EC:1.10.3.-] id=24489207 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
cytochrome c oxidase subunit III; K02299 cytochrome o ubiquinol oxidase subunit III [EC:1.10.3.-] Tax=RBG_16_RIF_WS3X_71_46_curated
cytochrome c oxidase subunit III
RBG_16_WS3_71_46_RBG_16_scaffold_272_29
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

33785..34093
DNA (309bp) protein (103aa)
hypothetical protein id=24489208 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Chloroflexi tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
hypothetical protein Tax=RBG_16_RIF_WS3X_71_46_curated
hypothetical protein
RBG_16_WS3_71_46_RBG_16_scaffold_272_trna_1
unknown

Not on your lists

comp(34277..34350)
DNA (74bp)
transferRNA
Displaying items 1-30 of 86 in total

View Taxonomy