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RBG_16_scaffold_24882_curated

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Displaying 9 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RBG_16_scaffold_24882_curated_1
RBG_16_Deltaproteobacteria_42_7_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(1..843)
DNA (843bp) protein (281aa)
molybdopterin oxidoreductase Fe4S4 region; K00184 molybdopterin oxidoreductase, iron-sulfur binding subunit [EC:1.2.7.-] rbh
Nitrate reductase id=4583997 bin=GWC2_Deltaproteobacteria_42_51 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Deltaproteobacteria_42_51 organism_group=Deltaproteobacteria rbh
Tax=RBG_16_Deltaproteobacteria_42_7_curated
RBG_16_scaffold_24882_curated_2
RBG_16_Deltaproteobacteria_42_7_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(962..1531)
DNA (570bp) protein (190aa)
Menaquinol oxidoreductase complex ACIII, cytochrome c subunit ActA id=4583996 bin=GWC2_Deltaproteobacteria_42_51 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Deltaproteobacteria_42_51 organism_group=Deltaproteobacteria rbh
hypothetical protein
Tax=RBG_16_Deltaproteobacteria_42_7_curated
RBG_16_scaffold_24882_curated_3
RBG_16_Deltaproteobacteria_42_7_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(2102..3166)
DNA (1065bp) protein (355aa)
replicative DNA helicase; K02314 replicative DNA helicase [EC:3.6.4.12] rbh
Replicative DNA helicase id=4584015 bin=GWC2_Deltaproteobacteria_42_51 species=Thermodesulfatator indicus genus=Thermodesulfatator taxon_order=Thermodesulfobacteriales taxon_class=Thermodesulfobacteria phylum=Thermodesulfobacteria tax=GWC2_Deltaproteobacteria_42_51 organism_group=Deltaproteobacteria rbh
Tax=RBG_16_Deltaproteobacteria_42_7_curated
RBG_16_scaffold_24882_curated_4
RBG_16_Deltaproteobacteria_42_7_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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3663..3860
DNA (198bp) protein (66aa)
Tax=RBG_16_Deltaproteobacteria_42_7_curated
RBG_16_scaffold_24882_curated_5
RBG_16_Deltaproteobacteria_42_7_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(4161..4445)
DNA (285bp) protein (95aa)
30S ribosomal protein S18 n=1 Tax=Anaeromyxobacter dehalogenans (strain 2CP-C) RepID=RS18_ANADE
rpsR; 30S ribosomal protein S18; K02963 small subunit ribosomal protein S18
Tax=RBG_16_Deltaproteobacteria_42_7_curated
RBG_16_scaffold_24882_curated_6
RBG_16_Deltaproteobacteria_42_7_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(4442..4795)
DNA (354bp) protein (118aa)
30S ribosomal protein S6 id=4498785 bin=GWA2_OP3_52_12 species=Candidatus Solibacter usitatus genus=Candidatus Solibacter taxon_order=Solibacterales taxon_class=Solibacteres phylum=Acidobacteria tax=GWA2_OP3_52_12 organism_group=OP3 (Omnitrophica) organism_desc=Genome is FULL of scaffolding errors
ribosomal protein S6
Tax=RBG_16_Deltaproteobacteria_42_7_curated
RBG_16_scaffold_24882_curated_7
RBG_16_Deltaproteobacteria_42_7_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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4949..5605
DNA (657bp) protein (219aa)
Transcriptional regulator, TraR/DksA family id=3219551 bin=GWC2_Deltaproteobacteria_42_51 species=Geobacter lovleyi genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Deltaproteobacteria_42_51 organism_group=Deltaproteobacteria
TraR/DksA family transcriptional regulator; K06204 DnaK suppressor protein
Tax=RBG_16_Deltaproteobacteria_42_7_curated
RBG_16_scaffold_24882_curated_8
RBG_16_Deltaproteobacteria_42_7_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5763..6830
DNA (1068bp) protein (356aa)
ApbE family lipoprotein id=3219558 bin=GWC2_Deltaproteobacteria_42_51 species=Dethiobacter alkaliphilus genus=Dethiobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Deltaproteobacteria_42_51 organism_group=Deltaproteobacteria rbh
ApbE family lipoprotein; K03734 thiamine biosynthesis lipoprotein
Tax=RBG_16_Deltaproteobacteria_42_7_curated
RBG_16_scaffold_24882_curated_9
RBG_16_Deltaproteobacteria_42_7_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6833..8017)
DNA (1185bp) protein (395aa)
Quinolinate phosphoribosyl transferase; K00763 nicotinate phosphoribosyltransferase [EC:2.4.2.11] rbh
Nicotinate phosphoribosyltransferase id=3219565 bin=GWC2_Deltaproteobacteria_42_51 species=unknown genus=Methanobacterium taxon_order=Methanobacteriales taxon_class=Methanobacteria phylum=Euryarchaeota tax=GWC2_Deltaproteobacteria_42_51 organism_group=Deltaproteobacteria rbh
Tax=RBG_16_Deltaproteobacteria_42_7_curated
Displaying 9 items

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