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RBG_19FT_COMBO_Syntrophobacterales_59_10_rbg_19ft_combo_scaffold_3989

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Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RBG_19FT_COMBO_Syntrophobacterales_59_10_rbg_19ft_combo_scaffold_3989_1
RBG_19FT_COMBO_Syntrophobacterales_59_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(553..2268)
-----------------
DNA (1716bp)
protein (572aa)
RNA polymerase sigma factor; K03086 RNA polymerase primary sigma factor Tax=RBG_19FT_COMBO_Syntrophobacterales_59_10_curated
RNA polymerase sigma factor id=4205745 bin=GWC2_Syntrophus__56_31 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Syntrophus__56_31 organism_group=Deltaproteobacteria organism_desc=Good +
RNA polymerase sigma factor
RBG_19FT_COMBO_Syntrophobacterales_59_10_rbg_19ft_combo_scaffold_3989_2
RBG_19FT_COMBO_Syntrophobacterales_59_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2590..2730)
-----------------
DNA (141bp)
protein (47aa)
Tax=RBG_19FT_COMBO_Syntrophobacterales_59_10_curated
RBG_19FT_COMBO_Syntrophobacterales_59_10_rbg_19ft_combo_scaffold_3989_3
RBG_19FT_COMBO_Syntrophobacterales_59_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2967..4325)
-----------------
DNA (1359bp)
protein (453aa)
replicative DNA helicase (EC:3.6.1.-); K02314 replicative DNA helicase [EC:3.6.4.12] Tax=RBG_19FT_COMBO_Syntrophobacterales_59_10_curated
replicative DNA helicase (EC:3.6.1.-)
Replicative DNA helicase id=4454753 bin=GWF2_Syntrophobacterales_56_9 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Syntrophobacterales_56_9 organism_group=Deltaproteobacteria
RBG_19FT_COMBO_Syntrophobacterales_59_10_rbg_19ft_combo_scaffold_3989_4
RBG_19FT_COMBO_Syntrophobacterales_59_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(4359..4805)
-----------------
DNA (447bp)
protein (149aa)
50S ribosomal protein L9; K02939 large subunit ribosomal protein L9 Tax=RBG_19FT_COMBO_Syntrophobacterales_59_10_curated
50S ribosomal protein L9 id=4454840 bin=GWF2_Syntrophobacterales_56_9 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Syntrophobacterales_56_9 organism_group=Deltaproteobacteria
50S ribosomal protein L9
RBG_19FT_COMBO_Syntrophobacterales_59_10_rbg_19ft_combo_scaffold_3989_5
RBG_19FT_COMBO_Syntrophobacterales_59_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5219..6016)
-----------------
DNA (798bp)
protein (266aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K1YR93_9BACT
hypothetical protein Tax=RBG_19FT_COMBO_Syntrophobacterales_59_10_curated
hypothetical protein
RBG_19FT_COMBO_Syntrophobacterales_59_10_rbg_19ft_combo_scaffold_3989_6
RBG_16_Deltaproteobacteria_58_17_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(6200..6472)
-----------------
DNA (273bp)
protein (91aa)
30S ribosomal protein S18 id=4454841 bin=GWF2_Syntrophobacterales_56_9 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Syntrophobacterales_56_9 organism_group=Deltaproteobacteria
30S ribosomal protein S18; K02963 small subunit ribosomal protein S18 Tax=RBG_16_Deltaproteobacteria_58_17_curated
30S ribosomal protein S18
RBG_19FT_COMBO_Syntrophobacterales_59_10_rbg_19ft_combo_scaffold_3989_7
RBG_19FT_COMBO_Syntrophobacterales_59_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(6469..6945)
-----------------
DNA (477bp)
protein (159aa)
30S ribosomal protein S6; K02990 small subunit ribosomal protein S6 Tax=RBG_19FT_COMBO_Syntrophobacterales_59_10_curated
30S ribosomal protein S6 id=4860353 bin=GWC2_Syntrophobacterales_56_13 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Syntrophobacterales_56_13 organism_group=Deltaproteobacteria organism_desc=Good +
30S ribosomal protein S6
RBG_19FT_COMBO_Syntrophobacterales_59_10_rbg_19ft_combo_scaffold_3989_trna_1
unknown

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comp(7069..7142)
-----------------
DNA (74bp)
transferRNA
RBG_19FT_COMBO_Syntrophobacterales_59_10_rbg_19ft_combo_scaffold_3989_8
RBG_19FT_COMBO_Syntrophobacterales_59_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7989..8345
-----------------
DNA (357bp)
protein (119aa)
N-acetylmuramoyl-L-alanine amidase (EC:3.5.1.28); K01448 N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] Tax=RBG_19FT_COMBO_Syntrophobacterales_59_10_curated
N-acetylmuramoyl-L-alanine amidase (EC:3.5.1.28)
N-acetylmuramoyl-L-alanine amidase id=4454846 bin=GWF2_Syntrophobacterales_56_9 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Syntrophobacterales_56_9 organism_group=Deltaproteobacteria
RBG_19FT_COMBO_Syntrophobacterales_59_10_rbg_19ft_combo_scaffold_3989_9
RBG_19FT_COMBO_Syntrophobacterales_59_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8309..9427
-----------------
DNA (1119bp)
protein (373aa)
N-acetylmuramoyl-L-alanine amidase (EC:3.5.1.28); K01448 N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] Tax=RBG_19FT_COMBO_Syntrophobacterales_59_10_curated
N-acetylmuramoyl-L-alanine amidase (EC:3.5.1.28)
N-acetylmuramoyl-L-alanine amidase id=4774381 bin=GWC2_Syntrophobacterales_56_13 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Syntrophobacterales_56_13 organism_group=Deltaproteobacteria organism_desc=Good +
RBG_19FT_COMBO_Syntrophobacterales_59_10_rbg_19ft_combo_scaffold_3989_10
RBG_19FT_COMBO_Syntrophobacterales_59_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9683..11308)
-----------------
DNA (1626bp)
protein (542aa)
Formate dehydrogenase, alpha subunit n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GH62_9FIRM
formate dehydrogenase, alpha subunit, archaeal-type Tax=RBG_19FT_COMBO_Syntrophobacterales_59_10_curated
formate dehydrogenase, alpha subunit, archaeal-type
RBG_19FT_COMBO_Syntrophobacterales_59_10_rbg_19ft_combo_scaffold_3989_11
RBG_19FT_COMBO_Syntrophobacterales_59_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11321..12415)
-----------------
DNA (1095bp)
protein (365aa)
nuoG; NADH-quinone oxidoreductase subunit G (EC:1.6.99.5) Tax=RBG_19FT_COMBO_Syntrophobacterales_59_10_curated
nuoG; NADH-quinone oxidoreductase subunit G (EC:1.6.99.5)
NADH-quinone oxidoreductase subunit G n=1 Tax=Thermacetogenium phaeum (strain ATCC BAA-254 / DSM 12270 / PB) RepID=K4LJ97_THEPS
RBG_19FT_COMBO_Syntrophobacterales_59_10_rbg_19ft_combo_scaffold_3989_12
RBG_19FT_COMBO_Syntrophobacterales_59_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12620..13840)
-----------------
DNA (1221bp)
protein (407aa)
NAD-reducing hydrogenase subunit; K00335 NADH-quinone oxidoreductase subunit F [EC:1.6.5.3] Tax=RBG_19FT_COMBO_Syntrophobacterales_59_10_curated
NAD-reducing hydrogenase subunit n=1 Tax=Anaerolinea thermophila (strain DSM 14523 / JCM 11388 / NBRC 100420 / UNI-1) RepID=E8N5U2_ANATU
NAD-reducing hydrogenase subunit
RBG_19FT_COMBO_Syntrophobacterales_59_10_rbg_19ft_combo_scaffold_3989_13
RBG_19FT_COMBO_Syntrophobacterales_59_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13876..14220)
-----------------
DNA (345bp)
protein (115aa)
Tax=RBG_19FT_COMBO_Syntrophobacterales_59_10_curated
RBG_19FT_COMBO_Syntrophobacterales_59_10_rbg_19ft_combo_scaffold_3989_14
RBG_19FT_COMBO_Syntrophobacterales_59_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14601..14984)
-----------------
DNA (384bp)
protein (128aa)
NADH dehydrogenase (ubiquinone) 24 kDa subunit (EC:1.6.5.3); K00334 NADH-quinone oxidoreductase subunit E [EC:1.6.5.3] Tax=RBG_19FT_COMBO_Syntrophobacterales_59_10_curated
NADH dehydrogenase (ubiquinone) 24 kDa subunit (EC:1.6.5.3)
NADH dehydrogenase (Ubiquinone) 24 kDa subunit n=1 Tax=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) RepID=B8D2G1_HALOH
RBG_19FT_COMBO_Syntrophobacterales_59_10_rbg_19ft_combo_scaffold_3989_15
RBG_19FT_COMBO_Syntrophobacterales_59_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15382..16269
-----------------
DNA (888bp)
protein (296aa)
integrase/recombinase; K04763 integrase/recombinase XerD Tax=RBG_19FT_COMBO_Syntrophobacterales_59_10_curated
Integrase/recombinase id=4774369 bin=GWC2_Syntrophobacterales_56_13 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Syntrophobacterales_56_13 organism_group=Deltaproteobacteria organism_desc=Good +
integrase/recombinase
RBG_19FT_COMBO_Syntrophobacterales_59_10_rbg_19ft_combo_scaffold_3989_16
RBG_19FT_COMBO_Syntrophobacterales_59_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16427..18334
-----------------
DNA (1908bp)
protein (636aa)
hypothetical protein Tax=RBG_19FT_COMBO_Syntrophobacterales_59_10_curated
Tetratricopeptide repeat family protein id=4569248 bin=GWF2_Syntrophobacterales_56_9 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Syntrophobacterales_56_9 organism_group=Deltaproteobacteria
hypothetical protein
RBG_19FT_COMBO_Syntrophobacterales_59_10_rbg_19ft_combo_scaffold_3989_17
RBG_19FT_COMBO_Syntrophobacterales_59_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18641..19468
-----------------
DNA (828bp)
protein (276aa)
2-dehydro-3-deoxyphosphooctonate aldolase (EC:2.5.1.55); K01627 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55] Tax=RBG_19FT_COMBO_Syntrophobacterales_59_10_curated
2-dehydro-3-deoxyphosphooctonate aldolase (EC:2.5.1.55)
2-dehydro-3-deoxyphosphooctonate aldolase id=3547904 bin=GWC2_Syntrophobacterales_56_13 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Syntrophobacterales_56_13 organism_group=Deltaproteobacteria organism_desc=Good +
RBG_19FT_COMBO_Syntrophobacterales_59_10_rbg_19ft_combo_scaffold_3989_18
RBG_19FT_COMBO_Syntrophobacterales_59_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20071..20691
-----------------
DNA (621bp)
protein (207aa)
hypothetical protein Tax=RBG_19FT_COMBO_Syntrophobacterales_59_10_curated
Hypothetical membrane protein id=3547900 bin=GWC2_Syntrophobacterales_56_13 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Syntrophobacterales_56_13 organism_group=Deltaproteobacteria organism_desc=Good +
hypothetical protein
RBG_19FT_COMBO_Syntrophobacterales_59_10_rbg_19ft_combo_scaffold_3989_19
RBG_19FT_COMBO_Syntrophobacterales_59_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20705..21262
-----------------
DNA (558bp)
protein (186aa)
organic solvent tolerance protein; K09774 lipopolysaccharide export system protein LptA Tax=RBG_19FT_COMBO_Syntrophobacterales_59_10_curated
Organic solvent tolerance protein id=4569239 bin=GWF2_Syntrophobacterales_56_9 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Syntrophobacterales_56_9 organism_group=Deltaproteobacteria
organic solvent tolerance protein
RBG_19FT_COMBO_Syntrophobacterales_59_10_rbg_19ft_combo_scaffold_3989_20
RBG_19FT_COMBO_Syntrophobacterales_59_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21290..21466
-----------------
DNA (177bp)
protein (59aa)
Tax=RBG_19FT_COMBO_Syntrophobacterales_59_10_curated
RBG_19FT_COMBO_Syntrophobacterales_59_10_rbg_19ft_combo_scaffold_3989_21
RBG_19FT_COMBO_Syntrophobacterales_59_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21490..22212
-----------------
DNA (723bp)
protein (241aa)
ABC transporter ATP-binding protein; K06861 lipopolysaccharide export system ATP-binding protein [EC:3.6.3.-] Tax=RBG_19FT_COMBO_Syntrophobacterales_59_10_curated
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K1XB09_9BACT
ABC transporter ATP-binding protein
RBG_19FT_COMBO_Syntrophobacterales_59_10_rbg_19ft_combo_scaffold_3989_22
RBG_19FT_COMBO_Syntrophobacterales_59_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22242..22397
-----------------
DNA (156bp)
protein (52aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K1XP32_9BACT
RNA polymerase sigma-54 factor; K03092 RNA polymerase sigma-54 factor Tax=RBG_19FT_COMBO_Syntrophobacterales_59_10_curated
RNA polymerase sigma-54 factor
Displaying 23 items

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