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RBG_19FT_COMBO_Thermodesulfovibrio_42_12_rbg_19ft_combo_scaffold_344

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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RBG_19FT_COMBO_Thermodesulfovibrio_42_12_rbg_19ft_combo_scaffold_344_1
RBG_19FT_COMBO_Thermodesulfovibrio_42_12_curated, Nitrospirae, Bacteria

Not on your lists

1048..1632
DNA (585bp) protein (195aa)
Tax=RBG_19FT_COMBO_Thermodesulfovibrio_42_12_curated
RBG_19FT_COMBO_Thermodesulfovibrio_42_12_rbg_19ft_combo_scaffold_344_2
RBG_19FT_COMBO_Thermodesulfovibrio_42_12_curated, Nitrospirae, Bacteria

Not on your lists

1960..2328
DNA (369bp) protein (123aa)
PREDICTED: hypothetical protein LOC100645963 n=1 Tax=Bombus terrestris RepID=UPI00021A7F21
PREDICTED: hypothetical protein LOC100645963 Tax=RBG_19FT_COMBO_Thermodesulfovibrio_42_12_curated
RBG_19FT_COMBO_Thermodesulfovibrio_42_12_rbg_19ft_combo_scaffold_344_3
RBG_19FT_COMBO_Thermodesulfovibrio_42_12_curated, Nitrospirae, Bacteria

Not on your lists

2979..4235
DNA (1257bp) protein (419aa)
lysA; diaminopimelate decarboxylase (EC:4.1.1.20); K01586 diaminopimelate decarboxylase [EC:4.1.1.20] Tax=RBG_19FT_COMBO_Thermodesulfovibrio_42_12_curated
lysA; diaminopimelate decarboxylase (EC:4.1.1.20)
Diaminopimelate decarboxylase id=3930759 bin=GWF2_Nitrospirae_44_13 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
RBG_19FT_COMBO_Thermodesulfovibrio_42_12_rbg_19ft_combo_scaffold_344_4
RBG_19FT_COMBO_Thermodesulfovibrio_42_12_curated, Nitrospirae, Bacteria

Not on your lists

4232..5101
DNA (870bp) protein (290aa)
dapF; diaminopimelate epimerase (EC:5.1.1.7); K01778 diaminopimelate epimerase [EC:5.1.1.7] Tax=RBG_19FT_COMBO_Thermodesulfovibrio_42_12_curated
dapF; diaminopimelate epimerase (EC:5.1.1.7)
Diaminopimelate epimerase id=3967329 bin=GWF2_Nitrospirae_44_13 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
RBG_19FT_COMBO_Thermodesulfovibrio_42_12_rbg_19ft_combo_scaffold_344_5
RBG_13_Nitrospirae_41_22_curated, Nitrospirae, Bacteria

Not on your lists

5117..5416
DNA (300bp) protein (100aa)
Tax=RBG_13_Nitrospirae_41_22_curated
RBG_19FT_COMBO_Thermodesulfovibrio_42_12_rbg_19ft_combo_scaffold_344_6
RBG_13_Nitrospirae_41_22_curated, Nitrospirae, Bacteria

Not on your lists

5557..6405
DNA (849bp) protein (283aa)
Heat shock protein DnaJ domain protein n=1 Tax=Desulfococcus multivorans DSM 2059 RepID=S7VJ87_DESML
dnaJ3; protein DnaJ3 Tax=RBG_13_Nitrospirae_41_22_curated
dnaJ3; protein DnaJ3
RBG_19FT_COMBO_Thermodesulfovibrio_42_12_rbg_19ft_combo_scaffold_344_7
RBG_19FT_COMBO_Thermodesulfovibrio_42_12_curated, Nitrospirae, Bacteria

Not on your lists

6677..8011
DNA (1335bp) protein (445aa)
Type II restriction-modification system sequence-specific DNA-methyltransferase n=1 Tax=Thermosynechococcus sp. NK55 RepID=V5V5A5_9CHRO
hypothetical protein Tax=RBG_19FT_COMBO_Thermodesulfovibrio_42_12_curated
type II restriction-modification system sequence-specific DNA-methyltransferase
RBG_19FT_COMBO_Thermodesulfovibrio_42_12_rbg_19ft_combo_scaffold_344_8
RBG_13_Nitrospirae_41_22_curated, Nitrospirae, Bacteria

Not on your lists

8020..8922
DNA (903bp) protein (301aa)
Endonuclease n=1 Tax=Roseiflexus castenholzii (strain DSM 13941 / HLO8) RepID=A7NS70_ROSCS
endonuclease Tax=RBG_13_Nitrospirae_41_22_curated
endonuclease
RBG_19FT_COMBO_Thermodesulfovibrio_42_12_rbg_19ft_combo_scaffold_344_9
RBG_13_Nitrospirae_41_22_curated, Nitrospirae, Bacteria

Not on your lists

comp(8901..9356)
DNA (456bp) protein (152aa)
bifunctional protein HldE (EC:2.7.1.- 2.7.7.-) Tax=RBG_13_Nitrospirae_41_22_curated
bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase (EC:2.7.1.- 2.7.7.-)
Bifunctional protein HldE id=3929489 bin=GWF2_Nitrospirae_44_13 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
RBG_19FT_COMBO_Thermodesulfovibrio_42_12_rbg_19ft_combo_scaffold_344_10
RBG_19FT_COMBO_Thermodesulfovibrio_42_12_curated, Nitrospirae, Bacteria

Not on your lists

comp(9688..10128)
DNA (441bp) protein (147aa)
AP4A hydrolase Tax=RBG_19FT_COMBO_Thermodesulfovibrio_42_12_curated
AP4A hydrolase id=3929492 bin=GWF2_Nitrospirae_44_13 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
AP4A hydrolase
RBG_19FT_COMBO_Thermodesulfovibrio_42_12_rbg_19ft_combo_scaffold_344_11
RBG_19FT_COMBO_Thermodesulfovibrio_42_12_curated, Nitrospirae, Bacteria

Not on your lists

comp(10154..11224)
DNA (1071bp) protein (357aa)
membrane-associated zinc metalloprotease; K11749 regulator of sigma E protease [EC:3.4.24.-] Tax=RBG_19FT_COMBO_Thermodesulfovibrio_42_12_curated
Membrane-associated zinc metalloprotease, putative id=2315183 bin=GWB2_Nitrospirae_rel_47_37 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWB2_Nitrospirae_rel_47_37 organism_group=Nitrospirae organism_desc=Good + (but may not be Nitrospirae phylum)
membrane-associated zinc metalloprotease
RBG_19FT_COMBO_Thermodesulfovibrio_42_12_rbg_19ft_combo_scaffold_344_12
RBG_19FT_COMBO_Thermodesulfovibrio_42_12_curated, Nitrospirae, Bacteria

Not on your lists

comp(11295..12464)
DNA (1170bp) protein (390aa)
dxr; 1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC:1.1.1.267); K00099 1-deoxy-D-xylulose-5-phosphate reductoisomerase [EC:1.1.1.267] Tax=RBG_19FT_COMBO_Thermodesulfovibrio_42_12_curated
dxr; 1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC:1.1.1.267)
1-deoxy-D-xylulose 5-phosphate reductoisomerase id=3929497 bin=GWF2_Nitrospirae_44_13 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
RBG_19FT_COMBO_Thermodesulfovibrio_42_12_rbg_19ft_combo_scaffold_344_13
RBG_19FT_COMBO_Thermodesulfovibrio_42_12_curated, Nitrospirae, Bacteria

Not on your lists

comp(12461..13249)
DNA (789bp) protein (263aa)
cdsA; phosphatidate cytidylyltransferase (EC:2.7.7.41); K00981 phosphatidate cytidylyltransferase [EC:2.7.7.41] Tax=RBG_19FT_COMBO_Thermodesulfovibrio_42_12_curated
cdsA; phosphatidate cytidylyltransferase (EC:2.7.7.41)
Phosphatidate cytidylyltransferase id=3929500 bin=GWF2_Nitrospirae_44_13 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
RBG_19FT_COMBO_Thermodesulfovibrio_42_12_rbg_19ft_combo_scaffold_344_14
RBG_19FT_COMBO_Thermodesulfovibrio_42_12_curated, Nitrospirae, Bacteria

Not on your lists

comp(13239..13958)
DNA (720bp) protein (240aa)
uppS; di-trans,poly-cis-decaprenylcistransferase (EC:2.5.1.31); K00806 undecaprenyl diphosphate synthase [EC:2.5.1.31] Tax=RBG_19FT_COMBO_Thermodesulfovibrio_42_12_curated
uppS; di-trans,poly-cis-decaprenylcistransferase (EC:2.5.1.31)
Isoprenyl transferase id=4844596 bin=GWC2_CP_Nitrospirae-rel_42_7 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWC2_CP_Nitrospirae-rel_42_7 organism_group=Nitrospirae
RBG_19FT_COMBO_Thermodesulfovibrio_42_12_rbg_19ft_combo_scaffold_344_15
RBG_19FT_COMBO_Thermodesulfovibrio_42_12_curated, Nitrospirae, Bacteria

Not on your lists

comp(13971..15557)
DNA (1587bp) protein (529aa)
hypothetical protein Tax=RBG_19FT_COMBO_Thermodesulfovibrio_42_12_curated
Putative uncharacterized protein id=3929509 bin=GWF2_Nitrospirae_44_13 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
hypothetical protein
RBG_19FT_COMBO_Thermodesulfovibrio_42_12_rbg_19ft_combo_scaffold_344_16
RBG_19FT_COMBO_Thermodesulfovibrio_42_12_curated, Nitrospirae, Bacteria

Not on your lists

comp(15788..16219)
DNA (432bp) protein (144aa)
nusB; transcription antitermination factor NusB; K03625 N utilization substance protein B Tax=RBG_19FT_COMBO_Thermodesulfovibrio_42_12_curated
N utilization substance protein B homolog id=3790016 bin=GWC2_CP_Nitrospirae-rel_42_7 species=ACD73 genus=ACD73 taxon_order=ACD73 taxon_class=ACD73 phylum=unknown tax=GWC2_CP_Nitrospirae-rel_42_7 organism_group=Nitrospirae
nusB; transcription antitermination factor NusB
RBG_19FT_COMBO_Thermodesulfovibrio_42_12_rbg_19ft_combo_scaffold_344_17
RBG_19FT_COMBO_Thermodesulfovibrio_42_12_curated, Nitrospirae, Bacteria

Not on your lists

comp(16280..16741)
DNA (462bp) protein (154aa)
ribH; 6,7-dimethyl-8-ribityllumazine synthase (EC:6.3.3.-); K00794 6,7-dimethyl-8-ribityllumazine synthase [EC:2.5.1.78] Tax=RBG_19FT_COMBO_Thermodesulfovibrio_42_12_curated
ribH; 6,7-dimethyl-8-ribityllumazine synthase (EC:6.3.3.-)
6,7-dimethyl-8-ribityllumazine synthase id=3684014 bin=GWF2_Nitrospirae_44_13 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
RBG_19FT_COMBO_Thermodesulfovibrio_42_12_rbg_19ft_combo_scaffold_344_18
RBG_19FT_COMBO_Thermodesulfovibrio_42_12_curated, Nitrospirae, Bacteria

Not on your lists

comp(16841..18055)
DNA (1215bp) protein (405aa)
riboflavin biosynthesis protein RibA (EC:3.5.4.25); K14652 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25] Tax=RBG_19FT_COMBO_Thermodesulfovibrio_42_12_cu
riboflavin biosynthesis GTP cyclohydrolase II RibA (EC:3.5.4.25)
Riboflavin biosynthesis protein RibA id=2726251 bin=GWF2_Nitrospirae_44_13 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
RBG_19FT_COMBO_Thermodesulfovibrio_42_12_rbg_19ft_combo_scaffold_344_19
RBG_19FT_COMBO_Thermodesulfovibrio_42_12_curated, Nitrospirae, Bacteria

Not on your lists

comp(18098..18739)
DNA (642bp) protein (214aa)
ribE; riboflavin synthase, alpha subunit (EC:2.5.1.9); K00793 riboflavin synthase [EC:2.5.1.9] Tax=RBG_19FT_COMBO_Thermodesulfovibrio_42_12_curated
ribE; riboflavin synthase subuit alpha (EC:2.5.1.9)
Riboflavin synthase, alpha subunit id=2726248 bin=GWF2_Nitrospirae_44_13 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
RBG_19FT_COMBO_Thermodesulfovibrio_42_12_rbg_19ft_combo_scaffold_344_20
RBG_13_Nitrospirae_41_22_curated, Nitrospirae, Bacteria

Not on your lists

comp(18741..19097)
DNA (357bp) protein (119aa)
id=2726247 Tax=RBG_13_Nitrospirae_41_22_curated
id=2726247 bin=GWF2_Nitrospirae_44_13 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
RBG_19FT_COMBO_Thermodesulfovibrio_42_12_rbg_19ft_combo_scaffold_344_21
RBG_13_Nitrospirae_41_22_curated, Nitrospirae, Bacteria

Not on your lists

comp(19094..19702)
DNA (609bp) protein (203aa)
lepB; signal peptidase I (EC:3.4.21.89); K03100 signal peptidase I [EC:3.4.21.89] Tax=RBG_13_Nitrospirae_41_22_curated
lepB; signal peptidase I (EC:3.4.21.89)
Signal peptidase I id=2726245 bin=GWF2_Nitrospirae_44_13 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
RBG_19FT_COMBO_Thermodesulfovibrio_42_12_rbg_19ft_combo_scaffold_344_22
RBG_13_Nitrospirae_41_22_curated, Nitrospirae, Bacteria

Not on your lists

comp(19699..19866)
DNA (168bp) protein (56aa)
Tax=RBG_13_Nitrospirae_41_22_curated
RBG_19FT_COMBO_Thermodesulfovibrio_42_12_rbg_19ft_combo_scaffold_344_23
RBG_19FT_COMBO_Thermodesulfovibrio_42_12_curated, Nitrospirae, Bacteria

Not on your lists

comp(19863..20795)
DNA (933bp) protein (311aa)
transcriptional regulator; K00845 glucokinase [EC:2.7.1.2] Tax=RBG_19FT_COMBO_Thermodesulfovibrio_42_12_curated
Transcriptional regulator id=4914788 bin=GWC2_CP_Nitrospirae-rel_42_7 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWC2_CP_Nitrospirae-rel_42_7 organism_group=Nitrospirae
transcriptional regulator
RBG_19FT_COMBO_Thermodesulfovibrio_42_12_rbg_19ft_combo_scaffold_344_24
RBG_13_Nitrospirae_41_22_curated, Nitrospirae, Bacteria

Not on your lists

comp(20798..21034)
DNA (237bp) protein (79aa)
hypothetical protein; K00176 2-oxoglutarate ferredoxin oxidoreductase subunit delta [EC:1.2.7.3] Tax=RBG_13_Nitrospirae_41_22_curated
Conserved domain protein id=3684002 bin=GWF2_Nitrospirae_44_13 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
hypothetical protein
RBG_19FT_COMBO_Thermodesulfovibrio_42_12_rbg_19ft_combo_scaffold_344_25
RBG_19FT_COMBO_Thermodesulfovibrio_42_12_curated, Nitrospirae, Bacteria

Not on your lists

comp(21094..22737)
DNA (1644bp) protein (548aa)
DNA repair protein RecN; K03631 DNA repair protein RecN (Recombination protein N) Tax=RBG_19FT_COMBO_Thermodesulfovibrio_42_12_curated
DNA repair protein RecN id=4748951 bin=GWC2_CP_Nitrospirae-rel_42_7 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=TA06 tax=GWC2_CP_Nitrospirae-rel_42_7 organism_group=Nitrospirae
DNA repair protein RecN
RBG_19FT_COMBO_Thermodesulfovibrio_42_12_rbg_19ft_combo_scaffold_344_26
RBG_19FT_COMBO_Thermodesulfovibrio_42_12_curated, Nitrospirae, Bacteria

Not on your lists

comp(22869..23303)
DNA (435bp) protein (145aa)
acylphosphatase; K01512 acylphosphatase [EC:3.6.1.7] Tax=RBG_19FT_COMBO_Thermodesulfovibrio_42_12_curated
Acylphosphatase id=3731009 bin=GWF2_Nitrospirae_44_13 species=Methanothermus fervidus genus=Methanothermus taxon_order=Methanobacteriales taxon_class=Methanobacteria phylum=Euryarchaeota tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
acylphosphatase
RBG_19FT_COMBO_Thermodesulfovibrio_42_12_rbg_19ft_combo_scaffold_344_27
RBG_19FT_COMBO_Thermodesulfovibrio_42_12_curated, Nitrospirae, Bacteria

Not on your lists

comp(23349..23483)
DNA (135bp) protein (45aa)
Tax=RBG_19FT_COMBO_Thermodesulfovibrio_42_12_curated
Displaying 27 items

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