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RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_4184

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_4184_1
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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1..102
DNA (102bp) protein (34aa)
formate dehydrogenase family accessory protein FdhD; K03752 molybdopterin-guanine dinucleotide biosynthesis protein A [EC:2.7.7.77] Tax=RBG_16_RIF_WS3X_71_46_curated
Molybdenum cofactor guanylyltransferase id=24469723 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Sideroxydans lithotrophicus genus=Sideroxydans taxon_order=Gallionellales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_4184_2
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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99..1376
DNA (1278bp) protein (426aa)
lysA; diaminopimelate decarboxylase (EC:4.1.1.20); K01586 diaminopimelate decarboxylase [EC:4.1.1.20] id=24469724 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=unknown taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
lysA; diaminopimelate decarboxylase (EC:4.1.1.20); K01586 diaminopimelate decarboxylase [EC:4.1.1.20] Tax=RBG_16_RIF_WS3X_71_46_curated
lysA; diaminopimelate decarboxylase (EC:4.1.1.20)
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_4184_3
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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comp(1380..2006)
DNA (627bp) protein (209aa)
MerR family transcriptional regulator id=24469725 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Hoeflea phototrophica genus=Hoeflea taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
MerR family transcriptional regulator Tax=RBG_16_RIF_WS3X_71_46_curated
putative transcriptional regulator
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_4184_4
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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comp(2044..2622)
DNA (579bp) protein (193aa)
XRE family transcriptional regulator id=24469726 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Hyphomicrobium sp. genus=Hyphomicrobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
XRE family transcriptional regulator Tax=RBG_16_RIF_WS3X_71_46_curated
XRE family transcriptional regulator
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_4184_5
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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3384..4136
DNA (753bp) protein (251aa)
Electron transfer flavoprotein subunit beta; K03521 electron transfer flavoprotein beta subunit id=24469727 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Ignavibacterium album genus=Ignavibacterium taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
Electron transfer flavoprotein subunit beta; K03521 electron transfer flavoprotein beta subunit Tax=RBG_16_RIF_WS3X_71_46_curated
electron transfer flavoprotein subunit beta
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_4184_6
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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4137..5114
DNA (978bp) protein (326aa)
electron transfer flavoprotein subunit alpha; K03522 electron transfer flavoprotein alpha subunit id=24469728 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
electron transfer flavoprotein subunit alpha; K03522 electron transfer flavoprotein alpha subunit Tax=RBG_16_RIF_WS3X_71_46_curated
electron transfer flavoprotein subunit alpha
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_4184_7
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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5214..5567
DNA (354bp) protein (118aa)
NADH-ubiquinone/plastoquinone oxidoreductase chain 3; K00330 NADH-quinone oxidoreductase subunit A [EC:1.6.5.3] id=24469729 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
NADH-ubiquinone/plastoquinone oxidoreductase chain 3; K00330 NADH-quinone oxidoreductase subunit A [EC:1.6.5.3] Tax=RBG_16_RIF_WS3X_71_46_curated
NADH-ubiquinone/plastoquinone oxidoreductase chain 3
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_4184_8
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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5608..6216
DNA (609bp) protein (203aa)
nqo; NADH-quinone oxidoreductase subunit 6 (NADH dehydrogenase I chain 6) (NDH-1 subunit 6) (EC:1.6.99.5) id=24469730 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
nqo; NADH-quinone oxidoreductase subunit 6 (NADH dehydrogenase I chain 6) (NDH-1 subunit 6) (EC:1.6.99.5) Tax=RBG_16_RIF_WS3X_71_46_curated
nqo; NADH-quinone oxidoreductase subunit 6 (NADH dehydrogenase I chain 6) (NDH-1 subunit 6) (EC:1.6.99.5)
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_4184_9
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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6213..6779
DNA (567bp) protein (189aa)
NADH (or F420H2) dehydrogenase subunit C (EC:1.6.99.5); K00332 NADH-quinone oxidoreductase subunit C [EC:1.6.5.3] id=24469731 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=Roseiflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
NADH (or F420H2) dehydrogenase subunit C (EC:1.6.99.5); K00332 NADH-quinone oxidoreductase subunit C [EC:1.6.5.3] Tax=RBG_16_RIF_WS3X_71_46_curated
NADH (or F420H2) dehydrogenase subunit C (EC:1.6.99.5)
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_4184_10
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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6784..8427
DNA (1644bp) protein (548aa)
NADH dehydrogenase I subunit D (EC:1.6.99.5); K00333 NADH-quinone oxidoreductase subunit D [EC:1.6.5.3] Tax=RBG_16_RIF_WS3X_71_46_curated
NADH dehydrogenase subunit D (EC:1.6.5.3)
NADH-quinone oxidoreductase subunit D 2 n=3 Tax=Chloroflexus RepID=NUOD2_CHLAA id=5223694 bin=16ft_combo_ws3_JS1 species=unknown genus=Chloroflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_4184_11
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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9039..9722
DNA (684bp) protein (228aa)
NADH dehydrogenase subunit F (EC:1.6.5.3); K00335 NADH-quinone oxidoreductase subunit F [EC:1.6.5.3] Tax=RBG_16_RIF_WS3X_71_46_curated
NADH dehydrogenase subunit F (EC:1.6.5.3); K00335 NADH-quinone oxidoreductase subunit F [EC:1.6.5.3] id=24469735 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Sulfobacillus acidophilus genus=Sulfobacillus taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
NADH dehydrogenase subunit F (EC:1.6.5.3)
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_4184_12
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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9719..12385
DNA (2667bp) protein (889aa)
nuog3; putative NADH-ubiquinone oxidoreductase subunit; K00336 NADH-quinone oxidoreductase subunit G [EC:1.6.5.3] id=24469736 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Caldilinea aerophila genus=Caldilinea taxon_order=Caldilineales taxon_class=Caldilineae phylum=Chloroflexi tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
nuog3; putative NADH-ubiquinone oxidoreductase subunit; K00336 NADH-quinone oxidoreductase subunit G [EC:1.6.5.3] Tax=RBG_16_RIF_WS3X_71_46_curated
nuog3; putative NADH-ubiquinone oxidoreductase subunit
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_4184_13
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

12393..13391
DNA (999bp) protein (333aa)
nuoH; NADH-quinone oxidoreductase subunit H (NADH dehydrogenase I, chain H) (NDH-1, chain H) (EC:1.6.5.3 1.6.99.5) id=24469737 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
nuoH; NADH-quinone oxidoreductase subunit H (NADH dehydrogenase I, chain H) (NDH-1, chain H) (EC:1.6.5.3 1.6.99.5) Tax=RBG_16_RIF_WS3X_71_46_curated
nuoH; NADH-quinone oxidoreductase subunit H (NADH dehydrogenase I, chain H) (NDH-1, chain H) (EC:1.6.5.3 1.6.99.5)
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_4184_14
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

13388..13933
DNA (546bp) protein (182aa)
NADH-ubiquinone/plastoquinone oxidoreductase chain 6; K00339 NADH-quinone oxidoreductase subunit J [EC:1.6.5.3] id=24469738 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
NADH-ubiquinone/plastoquinone oxidoreductase chain 6; K00339 NADH-quinone oxidoreductase subunit J [EC:1.6.5.3] Tax=RBG_16_RIF_WS3X_71_46_curated
NADH-ubiquinone/plastoquinone oxidoreductase chain 6
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_4184_15
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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13930..14232
DNA (303bp) protein (101aa)
nuoK; NADH-quinone oxidoreductase subunit K (NADH dehydrogenase I, chain K) (NDH-1, chain K) (EC:1.6.5.3 1.6.99.5) Tax=RBG_16_RIF_WS3X_71_46_curated
nuoK; NADH-quinone oxidoreductase subunit K (NADH dehydrogenase I, chain K) (NDH-1, chain K) (EC:1.6.5.3 1.6.99.5)
NADH-quinone oxidoreductase subunit K n=1 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MKE4_9BACT id=5223699 bin=16ft_combo_ws3_JS1 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_4184_16
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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14242..16155
DNA (1914bp) protein (638aa)
proton-translocating NADH-quinone oxidoreductase, chain L id=24469740 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Candidatus Kuenenia stuttgartiensis genus=Candidatus Kuenenia taxon_order=Candidatus Brocadiales taxon_class=Planctomycetia phylum=Planctomycetes tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
proton-translocating NADH-quinone oxidoreductase, chain L Tax=RBG_16_RIF_WS3X_71_46_curated
proton-translocating NADH-quinone oxidoreductase, chain L
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_4184_17
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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16152..17567
DNA (1416bp) protein (472aa)
proton-translocating NADH-quinone oxidoreductase subunit M; K00342 NADH-quinone oxidoreductase subunit M [EC:1.6.5.3] Tax=RBG_16_RIF_WS3X_71_46_curated
proton-translocating NADH-quinone oxidoreductase subunit M (EC:1.6.99.5)
Proton-translocating NADH-quinone oxidoreductase, chain M n=1 Tax=Desulfobacca acetoxidans (strain ATCC 700848 / DSM 11109 / ASRB2) RepID=F2NJZ0_DESAR id=5223701 bin=16ft_combo_ws3_JS1 species=Desulfobacca acetoxidans genus=Desulfobacca taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
Displaying 17 items

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