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RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_13105

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_13105_1
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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comp(3..1364)
DNA (1362bp) protein (454aa)
putative LmbE-like protein Tax=RBG_16_RIF_WS3X_71_46_curated
hypothetical protein
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_13105_2
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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comp(1490..4249)
DNA (2760bp) protein (920aa)
peptidase S9 prolyl oligopeptidase active site domain-containing protein Tax=RBG_16_RIF_WS3X_71_46_curated
peptidase S9 prolyl oligopeptidase active site domain-containing protein id=24543926 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
peptidase S9 prolyl oligopeptidase active site domain-containing protein
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_13105_3
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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4588..5187
DNA (600bp) protein (200aa)
alias=16ft_combo_ws3_scaffold_198_18 id=24543927 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=16ft_combo_ws3 genus=16ft_combo_ws3 taxon_order=16ft_combo_ws3 taxon_class=16ft_combo_ws3 phylum=WS3 tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
alias=16ft_combo_ws3_scaffold_198_18 Tax=RBG_16_RIF_WS3X_71_46_curated
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_13105_4
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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5583..5786
DNA (204bp) protein (68aa)
cold-shock DNA-binding domain-containing protein; K03704 cold shock protein (beta-ribbon, CspA family) id=24543928 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
cold-shock DNA-binding domain-containing protein; K03704 cold shock protein (beta-ribbon, CspA family) Tax=RBG_16_RIF_WS3X_71_46_curated
cold-shock DNA-binding protein family protein
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_13105_5
unknown

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comp(6363..6533)
DNA (171bp) protein (57aa)
id=24543929 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
id=24543929 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_13105_6
unknown

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comp(6747..6896)
DNA (150bp) protein (50aa)

This feature has no annotations

RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_13105_7
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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7017..7370
DNA (354bp) protein (118aa)
glycoside hydrolase family 16 id=24543930 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Riemerella anatipestifer genus=Riemerella taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
hypothetical protein Tax=RBG_16_RIF_WS3X_71_46_curated
glycoside hydrolase family 16
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_13105_8
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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7382..8647
DNA (1266bp) protein (422aa)
ROK family transcriptional regulator id=24543931 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=Myxococcus taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
ROK family transcriptional regulator Tax=RBG_16_RIF_WS3X_71_46_curated
ROK family transcriptional regulator
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_13105_9
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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8644..9474
DNA (831bp) protein (277aa)
glycosyl hydrolase family protein id=24543932 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Myxococcus xanthus genus=Myxococcus taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
glycosyl hydrolase family protein Tax=RBG_16_RIF_WS3X_71_46_curated
glycosyl hydrolase
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_13105_10
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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9471..10652
DNA (1182bp) protein (394aa)
ABC-type dipeptide transport system, periplasmic component; K02035 peptide/nickel transport system substrate-binding protein id=24543933 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Sorangium cellulosum genus=Sorangium taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
ABC-type dipeptide transport system, periplasmic component; K02035 peptide/nickel transport system substrate-binding protein Tax=RBG_16_RIF_WS3X_71_46_curated
dipeptide ABC transporter periplasmic protein
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_13105_11
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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10634..11131
DNA (498bp) protein (166aa)
ABC-type dipeptide transport system, periplasmic component n=1 Tax=Sorangium cellulosum (strain So ce56) RepID=A9F296_SORC5 id=5224394 bin=16ft_combo_ws3_JS1 species=Sorangium cellulosum genus=Sorangium taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
ABC-type dipeptide transport system, periplasmic component; K02035 peptide/nickel transport system substrate-binding protein Tax=RBG_16_RIF_WS3X_71_46_curated
peptide ABC transporter substrate-binding protein
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_13105_12
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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11141..12124
DNA (984bp) protein (328aa)
dppB; putative oligopeptide/dipeptide ABC transporter permease; K02033 peptide/nickel transport system permease protein id=24543935 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Corallococcus coralloides genus=Corallococcus taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
dppB; putative oligopeptide/dipeptide ABC transporter permease; K02033 peptide/nickel transport system permease protein Tax=RBG_16_RIF_WS3X_71_46_curated
dppB; putative oligopeptide/dipeptide ABC transporter permease
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_13105_13
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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12358..13020
DNA (663bp) protein (221aa)
peptide ABC transporter permease; K02034 peptide/nickel transport system permease protein id=24543936 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Sorangium cellulosum genus=Sorangium taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
peptide ABC transporter permease; K02034 peptide/nickel transport system permease protein Tax=RBG_16_RIF_WS3X_71_46_curated
peptide ABC transporter permease
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_13105_14
Streptomyces gancidicus, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

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comp(13502..13756)
DNA (255bp) protein (85aa)
cation transport ATPase n=1 Tax=Streptomyces somaliensis RepID=UPI00029B46A6
Cation transport ATPase {ECO:0000313|EMBL:EMF27026.1}; TaxID=1284664 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces gancidicus BKS 13-15.;
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_13105_15
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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13913..14080
DNA (168bp) protein (56aa)
Oligopeptide/dipeptide ABC transporter, ATPase subunit n=1 Tax=Ktedonobacter racemifer DSM 44963 RepID=D6TM18_9CHLR id=5224397 bin=16ft_combo_ws3_JS1 species=Ktedonobacter racemifer genus=Ktedonobacter taxon_order=Ktedonobacterales taxon_class=Ktedonobacteria phylum=Chloroflexi tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
peptide ABC transporter ATP-binding protein; K02031 peptide/nickel transport system ATP-binding protein Tax=RBG_16_RIF_WS3X_71_46_curated
dipeptide transport ATP-binding protein dppD
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_13105_16
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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comp(14383..17349)
DNA (2967bp) protein (989aa)
cellulase domain containing protein id=24543938 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Bacteroides finegoldii genus=Bacteroides taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
cellulase domain containing protein Tax=RBG_16_RIF_WS3X_71_46_curated
hypothetical protein
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_13105_17
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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comp(17587..17895)
DNA (309bp) protein (103aa)
putative beta-glucosidase; K05350 beta-glucosidase [EC:3.2.1.21] id=24543939 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Stigmatella aurantiaca genus=Stigmatella taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
Beta-glucosidase A; K05350 beta-glucosidase [EC:3.2.1.21] Tax=RBG_16_RIF_WS3X_71_46_curated
putative beta-glucosidase
Displaying 17 items

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