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RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_4691

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Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_4691_1
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

1..576
DNA (576bp) protein (192aa)
rseP; RIP metalloprotease RseP id=24460602 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Rhizobium sp. genus=Rhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
Zinc metallopeptidase protein Tax=RBG_16_RIF_WS3X_71_46_curated
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_4691_2
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(585..1379)
DNA (795bp) protein (265aa)
hypothetical protein id=24460603 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
hypothetical protein Tax=RBG_16_RIF_WS3X_71_46_curated
hypothetical protein
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_4691_3
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(1376..2614)
DNA (1239bp) protein (413aa)
DNA polymerase IV (EC:2.7.7.7); K02346 DNA polymerase IV [EC:2.7.7.7] id=24460604 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
DNA polymerase IV (EC:2.7.7.7); K02346 DNA polymerase IV [EC:2.7.7.7] Tax=RBG_16_RIF_WS3X_71_46_curated
DNA polymerase IV (EC:2.7.7.7)
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_4691_4
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(2676..2930)
DNA (255bp) protein (85aa)
Putative uncharacterized protein id=24460605 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
Putative uncharacterized protein Tax=RBG_16_RIF_WS3X_71_46_curated
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_4691_5
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(2999..3286)
DNA (288bp) protein (96aa)
id=5223204 bin=16ft_combo_ws3_JS1 species=16ft_combo_ws3 genus=16ft_combo_ws3 taxon_order=16ft_combo_ws3 taxon_class=16ft_combo_ws3 phylum=WS3 tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
id=5223204 Tax=RBG_16_RIF_WS3X_71_46_curated
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_4691_6
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(3430..4533)
DNA (1104bp) protein (368aa)
cytochrome c assembly protein; K02198 cytochrome c-type biogenesis protein CcmF id=24460606 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Chloroherpeton thalassium genus=Chloroherpeton taxon_order=Chlorobiales taxon_class=Chlorobia phylum=Chlorobi tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
cytochrome c assembly protein; K02198 cytochrome c-type biogenesis protein CcmF Tax=RBG_16_RIF_WS3X_71_46_curated
cytochrome c assembly protein
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_4691_7
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(4530..5672)
DNA (1143bp) protein (381aa)
cytochrome c assembly protein; K02198 cytochrome c-type biogenesis protein CcmF id=24460607 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Chloroherpeton thalassium genus=Chloroherpeton taxon_order=Chlorobiales taxon_class=Chlorobia phylum=Chlorobi tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
cytochrome c assembly protein; K02198 cytochrome c-type biogenesis protein CcmF Tax=RBG_16_RIF_WS3X_71_46_curated
cytochrome c assembly protein
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_4691_8
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(5684..6070)
DNA (387bp) protein (129aa)
ccmE; cytochrome C biogenesis protein; K02197 cytochrome c-type biogenesis protein CcmE id=24460608 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Acetonema longum genus=Acetonema taxon_order=Selenomonadales taxon_class=Negativicutes phylum=Firmicutes tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
ccmE; cytochrome C biogenesis protein; K02197 cytochrome c-type biogenesis protein CcmE Tax=RBG_16_RIF_WS3X_71_46_curated
CcmE/CycJ protein
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_4691_9
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(6067..6159)
DNA (93bp) protein (31aa)
id=5223201 bin=16ft_combo_ws3_JS1 species=16ft_combo_ws3 genus=16ft_combo_ws3 taxon_order=16ft_combo_ws3 taxon_class=16ft_combo_ws3 phylum=WS3 tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
id=5223201 Tax=RBG_16_RIF_WS3X_71_46_curated
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_4691_10
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(6204..6851)
DNA (648bp) protein (216aa)
Cytochrome c assembly protein n=1 Tax=Caldithrix abyssi DSM 13497 RepID=H1XY31_9BACT id=5223200 bin=16ft_combo_ws3_JS1 species=Caldithrix abyssi genus=Caldithrix taxon_order=unknown taxon_class=unknown phylum=unknown tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
ccmC; ABC-type cytochrome c biogenesis transport system permease component C; K02195 heme exporter protein C Tax=RBG_16_RIF_WS3X_71_46_curated
cytochrome c assembly protein
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_4691_11
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(6853..7527)
DNA (675bp) protein (225aa)
cytochrome c-type biogenesis protein CcmB; K02194 heme exporter protein B id=24460610 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
cytochrome c-type biogenesis protein CcmB; K02194 heme exporter protein B Tax=RBG_16_RIF_WS3X_71_46_curated
cytochrome c-type biogenesis protein CcmB
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_4691_12
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(7475..8146)
DNA (672bp) protein (224aa)
heme exporter protein CcmA; K02193 heme exporter protein A [EC:3.6.3.41] Tax=RBG_16_RIF_WS3X_71_46_curated
Heme exporter protein CcmA n=1 Tax=Chloroflexus aggregans (strain MD-66 / DSM 9485) RepID=B8G412_CHLAD id=5223198 bin=16ft_combo_ws3_JS1 species=Chloroflexus aggregans genus=Chloroflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
heme exporter protein CcmA
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_4691_13
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(8143..9171)
DNA (1029bp) protein (343aa)
hypothetical protein; K06881 phosphoesterase RecJ domain-containing protein id=24460612 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Gemmatimonas aurantiaca genus=Gemmatimonas taxon_order=Gemmatimonadales taxon_class=Gemmatimonadetes phylum=Gemmatimonadetes tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
hypothetical protein; K06881 phosphoesterase RecJ domain-containing protein Tax=RBG_16_RIF_WS3X_71_46_curated
hypothetical protein
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_4691_14
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(9168..9848)
DNA (681bp) protein (227aa)
glutamine amidotransferase subunit PdxT; K08681 glutamine amidotransferase [EC:2.6.-.-] id=24460613 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Corynebacterium amycolatum genus=Corynebacterium taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
glutamine amidotransferase subunit PdxT; K08681 glutamine amidotransferase [EC:2.6.-.-] Tax=RBG_16_RIF_WS3X_71_46_curated
glutamine amidotransferase subunit PdxT
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_4691_15
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(9829..10743)
DNA (915bp) protein (305aa)
pyridoxal phosphate synthase yaaD subunit (EC:4.-.-.-) id=24460614 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Ethanoligenens harbinense genus=Ethanoligenens taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
pyridoxal phosphate synthase yaaD subunit (EC:4.-.-.-) Tax=RBG_16_RIF_WS3X_71_46_curated
pyridoxal phosphate synthase yaaD subunit (EC:4.-.-.-)
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_4691_16
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(10760..11944)
DNA (1185bp) protein (395aa)
class V aminotransferase (EC:2.8.1.7); K04487 cysteine desulfurase [EC:2.8.1.7] Tax=RBG_16_RIF_WS3X_71_46_curated
class V aminotransferase (EC:2.8.1.7)
Aminotransferase class V n=1 Tax=Thermaerobacter marianensis (strain ATCC 700841 / DSM 12885 / JCM 10246 / 7p75a) RepID=E6SLB1_THEM7 id=5223194 bin=16ft_combo_ws3_JS1 species=Thermaerobacter marianensis genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_4691_17
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(11951..13009)
DNA (1059bp) protein (353aa)
CobQ/CobB/MinD/ParA nucleotide binding domain-containing protein; K03593 ATP-binding protein involved in chromosome partitioning id=24460617 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Cyanobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
CobQ/CobB/MinD/ParA nucleotide binding domain-containing protein; K03593 ATP-binding protein involved in chromosome partitioning Tax=RBG_16_RIF_WS3X_71_46_curated
CobQ/CobB/MinD/ParA nucleotide binding domain-containing protein
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_4691_18
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

13332..14255
DNA (924bp) protein (308aa)
radical SAM domain-containing protein id=24460618 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Blastopirellula marina genus=Blastopirellula taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
radical SAM domain-containing protein Tax=RBG_16_RIF_WS3X_71_46_curated
radical SAM domain-containing protein
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_4691_19
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

14378..15160
DNA (783bp) protein (261aa)
metallophosphoesterase id=24460619 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Blastopirellula marina genus=Blastopirellula taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
metallophosphoesterase Tax=RBG_16_RIF_WS3X_71_46_curated
metallophosphoesterase
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_4691_20
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

15157..15729
DNA (573bp) protein (191aa)
alkyl hydroperoxide reductase id=24460620 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
alkyl hydroperoxide reductase Tax=RBG_16_RIF_WS3X_71_46_curated
alkyl hydroperoxide reductase
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_4691_21
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

15732..16367
DNA (636bp) protein (212aa)
alkyl hydroperoxide reductase id=24460621 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
alkyl hydroperoxide reductase Tax=RBG_16_RIF_WS3X_71_46_curated
alkyl hydroperoxide reductase
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_4691_22
unknown

Not on your lists

comp(16265..16480)
DNA (216bp) protein (72aa)

This feature has no annotations

RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_4691_23
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

16585..18246
DNA (1662bp) protein (554aa)
endo-1,4-beta-xylanase (EC:3.2.1.8) id=24460622 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
Endo-1,4-beta-xylanase Tax=RBG_16_RIF_WS3X_71_46_curated
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_4691_24
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(18180..18449)
DNA (270bp) protein (90aa)
id=24460623 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
id=24460623 Tax=RBG_16_RIF_WS3X_71_46_curated
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_4691_25
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(18730..19203)
DNA (474bp) protein (158aa)
hypothetical protein id=24460624 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Azotobacter vinelandii genus=Azotobacter taxon_order=Pseudomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
hypothetical protein Tax=RBG_16_RIF_WS3X_71_46_curated
hypothetical protein
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_4691_26
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(19299..19655)
DNA (357bp) protein (119aa)
hypothetical protein id=24460625 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Brevibacillus borstelensis genus=Brevibacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
hypothetical protein Tax=RBG_16_RIF_WS3X_71_46_curated
hypothetical protein
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_4691_27
unknown

Not on your lists

20008..20166
DNA (159bp) protein (53aa)

This feature has no annotations

RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_4691_28
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(20133..21062)
DNA (930bp) protein (310aa)
cysteine synthase; K01738 cysteine synthase A [EC:2.5.1.47] id=24460627 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Deinococcus deserti genus=Deinococcus taxon_order=Deinococcales taxon_class=Deinococci phylum=Deinococcus-Thermus tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
cysteine synthase; K01738 cysteine synthase A [EC:2.5.1.47] Tax=RBG_16_RIF_WS3X_71_46_curated
cysteine synthase
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_4691_29
unknown

Not on your lists

21456..21545
DNA (90bp) protein (30aa)

This feature has no annotations

Displaying 29 items

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