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RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_2205

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Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_2205_1
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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258..698
DNA (441bp) protein (147aa)
id=5224246 Tax=RBG_16_RIF_WS3X_71_46_curated
id=5224246 bin=16ft_combo_ws3_JS1 species=16ft_combo_ws3 genus=16ft_combo_ws3 taxon_order=16ft_combo_ws3 taxon_class=16ft_combo_ws3 phylum=WS3 tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_2205_2
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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1046..1681
DNA (636bp) protein (212aa)
Uncharacterized protein id=24446270 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Methanosaeta concilii genus=Methanosaeta taxon_order=Methanosarcinales taxon_class=Methanomicrobia phylum=Euryarchaeota tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
Uncharacterized protein Tax=RBG_16_RIF_WS3X_71_46_curated
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_2205_trna_1
unknown

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1786..1869
DNA (84bp)
transferRNA
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_2205_3
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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1962..2441
DNA (480bp) protein (160aa)
SsrA-binding protein id=24446271 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
SsrA-binding protein Tax=RBG_16_RIF_WS3X_71_46_curated
SsrA-binding protein
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_2205_4
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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2486..3907
DNA (1422bp) protein (474aa)
N-acetylmuramoyl-L-alanine amidase (EC:3.5.1.28); K01448 N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] id=24446272 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Caulobacter sp. AP07 genus=Caulobacter taxon_order=Caulobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
N-acetylmuramoyl-L-alanine amidase (EC:3.5.1.28); K01448 N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] Tax=RBG_16_RIF_WS3X_71_46_curated
N-acetylmuramoyl-L-alanine amidase (EC:3.5.1.28)
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_2205_5
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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3915..4454
DNA (540bp) protein (180aa)
lipoprotein LpqB id=24446273 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
lipoprotein LpqB Tax=RBG_16_RIF_WS3X_71_46_curated
germane superfamily protein
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_2205_6
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

4469..5344
DNA (876bp) protein (292aa)
murI; glutamate racemase; K01776 glutamate racemase [EC:5.1.1.3] id=24446274 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Pelobacter carbinolicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
murI; glutamate racemase; K01776 glutamate racemase [EC:5.1.1.3] Tax=RBG_16_RIF_WS3X_71_46_curated
Glutamate racemase
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_2205_7
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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5484..6155
DNA (672bp) protein (224aa)
rph; ribonuclease PH; K00989 ribonuclease PH [EC:2.7.7.56] Tax=RBG_16_RIF_WS3X_71_46_curated
rph; ribonuclease PH; K00989 ribonuclease PH [EC:2.7.7.56] id=24446275 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Lamprocystis purpurea genus=Lamprocystis taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
rph; ribonuclease PH
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_2205_8
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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6152..6739
DNA (588bp) protein (196aa)
rdgB; non-canonical purine NTP pyrophosphatase; K02428 dITP/XTP pyrophosphatase [EC:3.6.1.19] id=24446276 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Nitrolancetus hollandicus genus=Nitrolancetus taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
rdgB; non-canonical purine NTP pyrophosphatase; K02428 dITP/XTP pyrophosphatase [EC:3.6.1.19] Tax=RBG_16_RIF_WS3X_71_46_curated
deoxyribonucleotide triphosphate pyrophosphatase
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_2205_9
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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comp(6984..7556)
DNA (573bp) protein (191aa)
pyk; Pyruvate kinase (EC:2.7.1.40) id=24446277 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Actinokineospora enzanensis genus=Actinokineospora taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
pyruvate kinase; K00873 pyruvate kinase [EC:2.7.1.40] Tax=RBG_16_RIF_WS3X_71_46_curated
pyruvate kinase (EC:2.7.1.40)
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_2205_10
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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comp(7701..8396)
DNA (696bp) protein (232aa)
pykA; pyruvate kinase PykA; K00873 pyruvate kinase [EC:2.7.1.40] id=24446278 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Sporichthya polymorpha genus=Sporichthya taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
pyruvate kinase; K00873 pyruvate kinase [EC:2.7.1.40] Tax=RBG_16_RIF_WS3X_71_46_curated
pykA; pyruvate kinase PykA
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_2205_trna_5
unknown

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comp(8508..8580)
DNA (73bp)
transferRNA
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_2205_trna_4
unknown

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comp(8626..8699)
DNA (74bp)
transferRNA
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_2205_trna_3
unknown

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comp(8751..8824)
DNA (74bp)
transferRNA
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_2205_11
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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9011..9445
DNA (435bp) protein (145aa)
ssb; single-stranded DNA-binding protein; K03111 single-strand DNA-binding protein id=24446279 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Stigmatella aurantiaca genus=Stigmatella taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
ssb; single-stranded DNA-binding protein; K03111 single-strand DNA-binding protein Tax=RBG_16_RIF_WS3X_71_46_curated
ssb; single-stranded DNA-binding protein
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_2205_12
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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10151..10900
DNA (750bp) protein (250aa)
alanine racemase domain-containing protein; K06997 id=24446280 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
alanine racemase domain-containing protein
Tax=RBG_16_RIF_WS3X_71_46_curated
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_2205_13
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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10914..11213
DNA (300bp) protein (100aa)
putative integral membrane protein id=24446281 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=unknown taxon_order=unknown taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
putative integral membrane protein Tax=RBG_16_RIF_WS3X_71_46_curated
putative integral membrane protein
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_2205_14
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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11210..11509
DNA (300bp) protein (100aa)
hypothetical protein; K09131 hypothetical protein id=24446282 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Isosphaera pallida genus=Isosphaera taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
hypothetical protein; K09131 hypothetical protein Tax=RBG_16_RIF_WS3X_71_46_curated
hypothetical protein
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_2205_15
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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11502..12356
DNA (855bp) protein (285aa)
purine nucleoside phosphorylase I (EC:2.4.2.1); K03783 purine-nucleoside phosphorylase [EC:2.4.2.1] id=24446283 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Isosphaera pallida genus=Isosphaera taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
purine nucleoside phosphorylase I (EC:2.4.2.1); K03783 purine-nucleoside phosphorylase [EC:2.4.2.1] Tax=RBG_16_RIF_WS3X_71_46_curated
purine nucleoside phosphorylase I (EC:2.4.2.1)
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_2205_16
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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12369..13244
DNA (876bp) protein (292aa)
DksA/TraR C4-type zinc finger protein id=24446284 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Streptomyces clavuligerus genus=Streptomyces taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
DksA/TraR C4-type zinc finger protein Tax=RBG_16_RIF_WS3X_71_46_curated
hypothetical protein
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_2205_17
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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13241..13867
DNA (627bp) protein (209aa)
lspA; lipoprotein signal peptidase (EC:3.4.23.36); K03101 signal peptidase II [EC:3.4.23.36] id=24446285 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
lspA; lipoprotein signal peptidase (EC:3.4.23.36); K03101 signal peptidase II [EC:3.4.23.36] Tax=RBG_16_RIF_WS3X_71_46_curated
peptidase A8
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_2205_18
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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13899..14756
DNA (858bp) protein (286aa)
ribosomal large subunit pseudouridine synthase D (EC:5.4.99.-); K06180 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] id=24446286 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Thermaerobacter marianensis genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
ribosomal large subunit pseudouridine synthase D (EC:5.4.99.-); K06180 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] Tax=RBG_16_RIF_WS3X_71_46_curated
ribosomal large subunit pseudouridine synthase D (EC:5.4.99.-)
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_2205_19
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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14765..15214
DNA (450bp) protein (150aa)
putative anti sigma factor; K04757 anti-sigma B factor [EC:2.7.11.1] id=24446287 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Gemmatimonas aurantiaca genus=Gemmatimonas taxon_order=Gemmatimonadales taxon_class=Gemmatimonadetes phylum=Gemmatimonadetes tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
putative anti sigma factor; K04757 anti-sigma B factor [EC:2.7.11.1] Tax=RBG_16_RIF_WS3X_71_46_curated
Serine-protein kinase
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_2205_20
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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15225..15662
DNA (438bp) protein (146aa)
Holliday junction resolvase YqgF; K07447 putative holliday junction resolvase [EC:3.1.-.-] id=24446288 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=Chloroflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
Holliday junction resolvase YqgF; K07447 putative holliday junction resolvase [EC:3.1.-.-] Tax=RBG_16_RIF_WS3X_71_46_curated
Holliday junction resolvase YqgF
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_2205_21
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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15666..16769
DNA (1104bp) protein (368aa)
aminodeoxychorismate lyase; K07082 UPF0755 protein id=24446289 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=Thermodesulfobacterium taxon_order=Thermodesulfobacteriales taxon_class=Thermodesulfobacteria phylum=Thermodesulfobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
aminodeoxychorismate lyase; K07082 UPF0755 protein Tax=RBG_16_RIF_WS3X_71_46_curated
aminodeoxychorismate lyase
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_2205_22
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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17275..17682
DNA (408bp) protein (136aa)
hypothetical protein; K06864 uncharacterized protein id=24446290 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Caldilinea aerophila genus=Caldilinea taxon_order=Caldilineales taxon_class=Caldilineae phylum=Chloroflexi tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
hypothetical protein; K06864 uncharacterized protein Tax=RBG_16_RIF_WS3X_71_46_curated
hypothetical protein
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_2205_23
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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17887..18132
DNA (246bp) protein (82aa)
alias=16ft_combo_ws3_scaffold_9619_12 id=24446291 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=16ft_combo_ws3 genus=16ft_combo_ws3 taxon_order=16ft_combo_ws3 taxon_class=16ft_combo_ws3 phylum=WS3 tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
alias=16ft_combo_ws3_scaffold_9619_12 Tax=RBG_16_RIF_WS3X_71_46_curated
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_2205_trna_2
unknown

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18123..18195
DNA (73bp)
transferRNA
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_2205_24
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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18534..19100
DNA (567bp) protein (189aa)
alias=16ft_combo_ws3_scaffold_9619_13 id=24446292 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=16ft_combo_ws3 genus=16ft_combo_ws3 taxon_order=16ft_combo_ws3 taxon_class=16ft_combo_ws3 phylum=WS3 tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
id=5225915 Tax=RBG_16_RIF_WS3X_71_46_curated
Displaying 29 items

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