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RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_10633

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Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_10633_1
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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73..792
DNA (720bp) protein (240aa)
alias=16ft_combo_ws3_scaffold_2718_6 id=24522216 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=16ft_combo_ws3 genus=16ft_combo_ws3 taxon_order=16ft_combo_ws3 taxon_class=16ft_combo_ws3 phylum=WS3 tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
alias=16ft_combo_ws3_scaffold_2718_6 Tax=RBG_16_RIF_WS3X_71_46_curated
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_10633_2
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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1013..1180
DNA (168bp) protein (56aa)
alias=16ft_combo_ws3_scaffold_2718_6 id=24522216 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=16ft_combo_ws3 genus=16ft_combo_ws3 taxon_order=16ft_combo_ws3 taxon_class=16ft_combo_ws3 phylum=WS3 tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
alias=16ft_combo_ws3_scaffold_2718_6 Tax=RBG_16_RIF_WS3X_71_46_curated
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_10633_3
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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comp(1353..2075)
DNA (723bp) protein (241aa)
alias=16ft_combo_ws3_scaffold_2718_7 id=24522217 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=16ft_combo_ws3 genus=16ft_combo_ws3 taxon_order=16ft_combo_ws3 taxon_class=16ft_combo_ws3 phylum=WS3 tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
alias=16ft_combo_ws3_scaffold_2718_7 Tax=RBG_16_RIF_WS3X_71_46_curated
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_10633_4
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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2621..3100
DNA (480bp) protein (160aa)
rocF; arginase (EC:3.5.3.1); K01476 arginase [EC:3.5.3.1] Tax=RBG_16_RIF_WS3X_71_46_curated
rocF; arginase (EC:3.5.3.1)
Arginase n=1 Tax=Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670) RepID=C1F9P6_ACIC5 id=5224631 bin=16ft_combo_ws3_JS1 species=Acidobacterium capsulatum genus=Acidobacterium taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_10633_5
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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comp(3473..4030)
DNA (558bp) protein (186aa)
hypothetical protein; K03744 LemA protein id=24522220 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Methylobacterium extorquens genus=Methylobacterium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
hypothetical protein; K03744 LemA protein Tax=RBG_16_RIF_WS3X_71_46_curated
hypothetical protein
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_10633_6
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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comp(4888..5052)
DNA (165bp) protein (55aa)
Putative uncharacterized protein n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IRI0_KORVE id=5225595 bin=16ft_combo_ws3_JS1 species=Candidatus Koribacter versatilis genus=Candidatus Koribacter taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
hypothetical protein Tax=RBG_16_RIF_WS3X_71_46_curated
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_10633_7
unknown

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5286..5504
DNA (219bp) protein (73aa)

This feature has no annotations

RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_10633_8
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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comp(5744..5992)
DNA (249bp) protein (83aa)
sensor histidine kinase id=24522221 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=unknown taxon_order=unknown taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
PAS domain-containing sensor histidine kinase response regulator heme-binding site Tax=RBG_16_RIF_WS3X_71_46_curated
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_10633_9
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(6673..8343)
DNA (1671bp) protein (557aa)
multi-sensor hybrid histidine kinase id=24522222 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=unknown taxon_order=unknown taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
PAS domain-containing sensor histidine kinase response regulator heme-binding site Tax=RBG_16_RIF_WS3X_71_46_curated
multi-sensor hybrid histidine kinase
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_10633_10
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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8785..9768
DNA (984bp) protein (328aa)
Thioredoxin reductase (EC:1.8.1.9) id=24522223 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Euryarchaeota tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
Thioredoxin reductase (EC:1.8.1.9) Tax=RBG_16_RIF_WS3X_71_46_curated
Thioredoxin reductase (EC:1.8.1.9)
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_10633_11
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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9809..11647
DNA (1839bp) protein (613aa)
2-oxoacid:ferredoxin/flavodoxin oxidoreductase gamma subunit family protein; K00174 2-oxoglutarate ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3] Tax=RBG_16_RIF_WS3X_71_46_curated
2-oxoacid:ferredoxin/flavodoxin oxidoreductase gamma subunit family protein n=1 Tax=Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670) RepID=C1F9V2_ACIC5 id=5225592 bin=16ft_combo_ws3_JS1 species=Acidobacterium capsulatum genus=Acidobacterium taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
2-oxoacid:ferredoxin/flavodoxin oxidoreductase subunit gamma family protein
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_10633_12
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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11644..13734
DNA (2091bp) protein (697aa)
2-oxoacid:ferredoxin/flavodoxin oxidoreductase gamma subunit family protein; K00174 2-oxoglutarate ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3] id=24522224 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Acidobacterium capsulatum genus=Acidobacterium taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
2-oxoglutarate ferredoxin oxidoreductase subunit beta; K00175 2-oxoglutarate ferredoxin oxidoreductase subunit beta [EC:1.2.7.3] Tax=RBG_16_RIF_WS3X_71_46_curated
2-oxoglutarate ferredoxin oxidoreductase subunit beta
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_10633_13
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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14927..15175
DNA (249bp) protein (83aa)
hypothetical protein id=24522225 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
peptidase M20 Tax=RBG_16_RIF_WS3X_71_46_curated
hypothetical protein
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_10633_14
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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15218..17269
DNA (2052bp) protein (684aa)
Kef-type K+ transport system NAD-binding protein; K03455 monovalent cation:H+ antiporter-2, CPA2 family id=24522226 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
Kef-type K+ transport system NAD-binding protein; K03455 monovalent cation:H+ antiporter-2, CPA2 family Tax=RBG_16_RIF_WS3X_71_46_curated
Kef-type K+ transport system NAD-binding protein
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_10633_15
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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17266..17556
DNA (291bp) protein (97aa)
Serine/threonine protein kinase with FHA domain id=24522227 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Frankia sp. genus=Frankia taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
diguanylate cyclase Tax=RBG_16_RIF_WS3X_71_46_curated
Displaying 15 items

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