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RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_4650

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Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_4650_1
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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comp(3..1034)
DNA (1032bp) protein (344aa)
priA; primosomal protein N'; K04066 primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:3.6.4.-] id=24460144 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Pelotomaculum thermopropionicum genus=Pelotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
PriA; primosomal protein N'; K04066 primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:3.6.4.-] Tax=RBG_16_RIF_WS3X_71_46_curated
priA; primosomal protein N'
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_4650_2
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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comp(1225..1620)
DNA (396bp) protein (132aa)
two component transcriptional regulator, winged helix family; K07658 two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP id=24460145 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Thermosediminibacter oceani genus=Thermosediminibacter taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft b
two component transcriptional regulator, winged helix family; K07658 two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP Tax=RBG_16_RIF_WS3X_71_46_curated
two component transcriptional regulator, winged helix family
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_4650_3
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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comp(1626..3890)
DNA (2265bp) protein (755aa)
GAF sensor signal transduction histidine kinase (EC:2.7.3.-); K00936 [EC:2.7.3.-] Tax=RBG_16_RIF_WS3X_71_46_curated
Sensor histidine kinase cyclic nucleotide phosphodiesterase, GAF, GAF and HD-GYP-related domain-containing n=2 Tax=Geobacter metallireducens RepID=Q39U54_GEOMG id=5223141 bin=16ft_combo_ws3_JS1 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
sensor histidine kinase cyclic nucleotide phosphodiesterase
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_4650_4
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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comp(4394..6706)
DNA (2313bp) protein (771aa)
GAF domain/His kinase A domain/HD domain-containing protein Tax=RBG_16_RIF_WS3X_71_46_curated
GAF domain/His kinase A domain/HD domain-containing protein id=24460147 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
histidine kinase
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_4650_5
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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comp(6730..7068)
DNA (339bp) protein (113aa)
diguanylate cyclase/phosphodiesterase id=24460148 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Clostridium thermocellum genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
response regulator receiver modulated diguanylate cyclase Tax=RBG_16_RIF_WS3X_71_46_curated
diguanylate cyclase/phosphodiesterase
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_4650_6
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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comp(7035..7886)
DNA (852bp) protein (284aa)
response regulator receiver modulated diguanylate cyclase id=24460149 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Clostridium thermocellum genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
response regulator receiver modulated diguanylate cyclase Tax=RBG_16_RIF_WS3X_71_46_curated
response regulator receiver modulated diguanylate cyclase
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_4650_7
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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comp(9040..9357)
DNA (318bp) protein (106aa)
Divalent ion tolerance protein n=1 Tax=Myxococcus stipitatus (strain DSM 14675 / JCM 12634 / Mx s8) RepID=L7UFI9_MYXSD id=5223137 bin=16ft_combo_ws3_JS1 species=Myxococcus stipitatus genus=Myxococcus taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
divalent ion tolerance protein Tax=RBG_16_RIF_WS3X_71_46_curated
CutA1 divalent ion tolerance protein
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_4650_8
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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9549..10724
DNA (1176bp) protein (392aa)
hypothetical protein id=24460152 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
hypothetical protein Tax=RBG_16_RIF_WS3X_71_46_curated
hypothetical protein
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_4650_9
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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10721..11749
DNA (1029bp) protein (343aa)
putative D-alanine-D-alanine ligase; K01921 D-alanine-D-alanine ligase [EC:6.3.2.4] Tax=RBG_16_RIF_WS3X_71_46_curated
Blr7451 protein n=7 Tax=Bradyrhizobium RepID=Q89DI8_BRAJA id=5223135 bin=16ft_combo_ws3_JS1 species=unknown genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
putative D-alanine-D-alanine ligase
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_4650_10
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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12359..15058
DNA (2700bp) protein (900aa)
hypothetical protein id=24460154 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Caldilinea aerophila genus=Caldilinea taxon_order=Caldilineales taxon_class=Caldilineae phylum=Chloroflexi tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
hypothetical protein Tax=RBG_16_RIF_WS3X_71_46_curated
hypothetical protein
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_4650_11
unknown

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15307..15969
DNA (663bp) protein (221aa)

This feature has no annotations

RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_4650_12
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(15828..16268)
DNA (441bp) protein (147aa)
ornithine carbamoyltransferase (EC:2.1.3.3); K00611 ornithine carbamoyltransferase [EC:2.1.3.3] id=24460155 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=Chloroflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
ornithine carbamoyltransferase; K00611 ornithine carbamoyltransferase [EC:2.1.3.3] Tax=RBG_16_RIF_WS3X_71_46_curated
ornithine carbamoyltransferase (EC:2.1.3.3)
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_4650_13
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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comp(16336..17556)
DNA (1221bp) protein (407aa)
Uncharacterized protein n=1 Tax=Thermococcus barophilus (strain DSM 11836 / MP) RepID=F0LMI9_THEBM id=5223132 bin=16ft_combo_ws3_JS1 species=Thermococcus barophilus genus=Thermococcus taxon_order=Thermococcales taxon_class=Thermococci phylum=Euryarchaeota tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
hypothetical protein Tax=RBG_16_RIF_WS3X_71_46_curated
Hypothetical protein
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_4650_14
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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18233..19777
DNA (1545bp) protein (515aa)
Carboxypeptidase Taq (EC:3.4.17.19) id=24460157 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Cyanobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
Carboxypeptidase Taq (EC:3.4.17.19) Tax=RBG_16_RIF_WS3X_71_46_curated
Carboxypeptidase Taq (EC:3.4.17.19)
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_4650_15
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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20011..20664
DNA (654bp) protein (218aa)
alias=16ft_combo_ws3_scaffold_1020_14 id=24460158 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=16ft_combo_ws3 genus=16ft_combo_ws3 taxon_order=16ft_combo_ws3 taxon_class=16ft_combo_ws3 phylum=WS3 tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
id=5223130 Tax=RBG_16_RIF_WS3X_71_46_curated
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_4650_16
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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21125..21586
DNA (462bp) protein (154aa)
hypothetical protein id=24460159 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Desulfotomaculum acetoxidans genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
hypothetical protein Tax=RBG_16_RIF_WS3X_71_46_curated
hypothetical protein
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_4650_17
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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21595..22005
DNA (411bp) protein (137aa)
Putative uncharacterized protein id=24460160 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
Putative uncharacterized protein Tax=RBG_16_RIF_WS3X_71_46_curated
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_4650_18
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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22007..25018
DNA (3012bp) protein (1004aa)
Uncharacterized protein id=24460161 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Cyanobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
Uncharacterized protein Tax=RBG_16_RIF_WS3X_71_46_curated
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_4650_19
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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25723..26997
DNA (1275bp) protein (425aa)
N-glycosyltransferase; K11936 biofilm PGA synthesis N-glycosyltransferase PgaC [EC:2.4.-.-] id=24460162 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=Rubrivivax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
N-glycosyltransferase; K11936 biofilm PGA synthesis N-glycosyltransferase PgaC [EC:2.4.-.-] Tax=RBG_16_RIF_WS3X_71_46_curated
N-glycosyltransferase
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_4650_20
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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26979..27389
DNA (411bp) protein (137aa)
TPR domain protein id=24460163 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
TPR domain-containing protein Tax=RBG_16_RIF_WS3X_71_46_curated
Displaying 20 items

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