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RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_5550

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Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_5550_1
unknown

Not on your lists

comp(3..332)
DNA (330bp) protein (110aa)
Possible cell surface protein id=24471002 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Lactobacillus casei genus=Lactobacillus taxon_order=Lactobacillales taxon_class=Bacilli phylum=Firmicutes tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
Possible cell surface protein id=24471002 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Lactobacillus casei genus=Lactobacillus taxon_order=Lactobacillales taxon_class=Bacilli phylum=Firmicutes tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_5550_2
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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590..733
DNA (144bp) protein (48aa)
id=5225150 bin=16ft_combo_ws3_JS1 species=16ft_combo_ws3 genus=16ft_combo_ws3 taxon_order=16ft_combo_ws3 taxon_class=16ft_combo_ws3 phylum=WS3 tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
id=5225150 Tax=RBG_16_RIF_WS3X_71_46_curated
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_5550_3
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(792..959)
DNA (168bp) protein (56aa)
hypothetical protein id=24471003 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=16ft_combo_ws3 genus=16ft_combo_ws3 taxon_order=16ft_combo_ws3 taxon_class=16ft_combo_ws3 phylum=WS3 tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
hypothetical protein Tax=RBG_16_RIF_WS3X_71_46_curated
hypothetical protein
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_5550_4
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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comp(1047..2135)
DNA (1089bp) protein (363aa)
Peptide chain release factor 1 n=1 Tax=Thermacetogenium phaeum (strain ATCC BAA-254 / DSM 12270 / PB) RepID=K4LIU7_THEPS id=5225148 bin=16ft_combo_ws3_JS1 species=Thermacetogenium phaeum genus=Thermacetogenium taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
prfA; peptide chain release factor 1 Tax=RBG_16_RIF_WS3X_71_46_curated
prfA; peptide chain release factor 1
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_5550_5
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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comp(2146..3081)
DNA (936bp) protein (312aa)
Uncharacterized protein n=2 Tax=Geobacter sulfurreducens RepID=D7AEP7_GEOSK id=5225147 bin=16ft_combo_ws3_JS1 species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
hypothetical protein Tax=RBG_16_RIF_WS3X_71_46_curated
hypothetical protein
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_5550_6
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists


comp(3150..3422)
DNA (273bp) protein (91aa)
50S ribosomal protein L31; K02909 large subunit ribosomal protein L31 id=24471006 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Methyloversatilis universalis genus=Methyloversatilis taxon_order=Rhodocyclales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
50S ribosomal protein L31; K02909 large subunit ribosomal protein L31 Tax=RBG_16_RIF_WS3X_71_46_curated
50S ribosomal protein L31
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_5550_7
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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comp(3600..4097)
DNA (498bp) protein (166aa)
hypothetical protein id=24471007 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Gemmatimonas aurantiaca genus=Gemmatimonas taxon_order=Gemmatimonadales taxon_class=Gemmatimonadetes phylum=Gemmatimonadetes tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
hypothetical protein Tax=RBG_16_RIF_WS3X_71_46_curated
hypothetical protein
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_5550_8
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(4159..4665)
DNA (507bp) protein (169aa)
hypothetical protein id=24471008 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Azoarcus sp. genus=Azoarcus taxon_order=Rhodocyclales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
hypothetical protein Tax=RBG_16_RIF_WS3X_71_46_curated
hypothetical protein
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_5550_9
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(4760..4945)
DNA (186bp) protein (62aa)
hypothetical protein id=24471009 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Hyphomicrobium denitrificans genus=Hyphomicrobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
hypothetical protein Tax=RBG_16_RIF_WS3X_71_46_curated
hypothetical protein
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_5550_10
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(5035..5661)
DNA (627bp) protein (209aa)
alias=16ft_combo_ws3_scaffold_5011_13 id=24471010 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=16ft_combo_ws3 genus=16ft_combo_ws3 taxon_order=16ft_combo_ws3 taxon_class=16ft_combo_ws3 phylum=WS3 tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
alias=16ft_combo_ws3_scaffold_5011_13 Tax=RBG_16_RIF_WS3X_71_46_curated
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_5550_11
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(5768..6139)
DNA (372bp) protein (124aa)
glyoxalase/bleomycin resistance protein/dioxygenase id=24471011 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Cyanobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
glyoxalase/bleomycin resistance protein/dioxygenase Tax=RBG_16_RIF_WS3X_71_46_curated
glyoxalase/bleomycin resistance protein/dioxygenase
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_5550_12
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(6305..7669)
DNA (1365bp) protein (455aa)
rho; transcription termination factor Rho; K03628 transcription termination factor Rho id=24471012 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
rho; transcription termination factor Rho; K03628 transcription termination factor Rho Tax=RBG_16_RIF_WS3X_71_46_curated
rho; transcription termination factor Rho
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_5550_13
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(8108..8311)
DNA (204bp) protein (68aa)
alias=16ft_combo_ws3_scaffold_5011_10 id=24471013 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=16ft_combo_ws3 genus=16ft_combo_ws3 taxon_order=16ft_combo_ws3 taxon_class=16ft_combo_ws3 phylum=WS3 tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
alias=16ft_combo_ws3_scaffold_5011_10 Tax=RBG_16_RIF_WS3X_71_46_curated
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_5550_14
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(8632..9300)
DNA (669bp) protein (223aa)
adenylate cyclase
alias=16ft_combo_ws3_scaffold_5011_9 id=24471014 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=16ft_combo_ws3 genus=16ft_combo_ws3 taxon_order=16ft_combo_ws3 taxon_class=16ft_combo_ws3 phylum=WS3 tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
alias=16ft_combo_ws3_scaffold_5011_9 Tax=RBG_16_RIF_WS3X_71_46_curated
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_5550_15
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(9304..10737)
DNA (1434bp) protein (478aa)
Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Anaeromyxobacter sp. (strain Fw109-5) RepID=A7HCY5_ANADF id=5225138 bin=16ft_combo_ws3_JS1 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
two component sigma54 specific Fis family transcriptional regulator Tax=RBG_16_RIF_WS3X_71_46_curated
two component sigma54 specific Fis family transcriptional regulator
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_5550_16
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(10741..12102)
DNA (1362bp) protein (454aa)
signal transduction histidine kinase, nitrogen specific, NtrB id=24471016 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Desulfobulbus propionicus genus=Desulfobulbus taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
signal transduction histidine kinase, nitrogen specific, NtrB Tax=RBG_16_RIF_WS3X_71_46_curated
signal transduction histidine kinase, nitrogen specific, NtrB
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_5550_17
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(12119..12547)
DNA (429bp) protein (143aa)
molybdenum cofactor sulfurase domain containing protein id=24471017 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Cystobacter fuscus genus=Cystobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
molybdenum cofactor sulfurase domain containing protein Tax=RBG_16_RIF_WS3X_71_46_curated
molybdenum cofactor sulfurase domain containing protein
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_5550_18
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(12618..12887)
DNA (270bp) protein (90aa)
Transmembrane protein Tax=RBG_16_RIF_WS3X_71_46_curated
hypothetical protein id=24471018 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Natronolimnobius innermongolicus genus=Natronolimnobius taxon_order=Halobacteriales taxon_class=Halobacteria phylum=Euryarchaeota tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_5550_19
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(13039..14463)
DNA (1425bp) protein (475aa)
dihydrolipoamide dehydrogenase; K00382 dihydrolipoamide dehydrogenase [EC:1.8.1.4] id=24471019 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Poribacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
dihydrolipoamide dehydrogenase; K00382 dihydrolipoamide dehydrogenase [EC:1.8.1.4] Tax=RBG_16_RIF_WS3X_71_46_curated
dihydrolipoamide dehydrogenase
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_5550_20
unknown

Not on your lists

comp(14835..15002)
DNA (168bp) protein (56aa)

This feature has no annotations

RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_5550_21
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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15128..15304
DNA (177bp) protein (59aa)
Putative uncharacterized protein n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IS72_KORVE id=5225133 bin=16ft_combo_ws3_JS1 species=Candidatus Koribacter versatilis genus=Candidatus Koribacter taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
hypothetical protein Tax=RBG_16_RIF_WS3X_71_46_curated
hypothetical protein
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_5550_22
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

15749..15886
DNA (138bp) protein (46aa)
hypothetical protein; K09931 hypothetical protein Tax=RBG_16_RIF_WS3X_71_46_curated
hypothetical protein; K09931 hypothetical protein id=24471021 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Methanosphaerula palustris genus=Methanosphaerula taxon_order=Methanomicrobiales taxon_class=Methanomicrobia phylum=Euryarchaeota tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
hypothetical protein
Displaying 22 items

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