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RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_5783

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Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_5783_1
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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471..1460
DNA (990bp) protein (330aa)
UDP-N-acetylmuramate dehydrogenase (EC:1.1.1.158) id=24479396 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Symbiobacterium thermophilum genus=Symbiobacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
UDP-N-acetylmuramate dehydrogenase (EC:1.3.1.98) Tax=RBG_16_RIF_WS3X_71_46_curated
UDP-N-acetylmuramate dehydrogenase (EC:1.1.1.158)
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_5783_2
unknown

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1631..1855
DNA (225bp) protein (75aa)
id=24479397 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
id=24479397 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_5783_3
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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2736..3875
DNA (1140bp) protein (380aa)
redoxin domain-containing protein id=24479398 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Burkholderia gladioli genus=Burkholderia taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
redoxin domain-containing protein Tax=RBG_16_RIF_WS3X_71_46_curated
ahpC/TSA family protein
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_5783_4
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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3898..4101
DNA (204bp) protein (68aa)
alias=16ft_combo_ws3_scaffold_3366_20 id=24479399 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=16ft_combo_ws3 genus=16ft_combo_ws3 taxon_order=16ft_combo_ws3 taxon_class=16ft_combo_ws3 phylum=WS3 tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
alias=16ft_combo_ws3_scaffold_3366_20 Tax=RBG_16_RIF_WS3X_71_46_curated
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_5783_5
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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comp(4098..4937)
DNA (840bp) protein (280aa)
Uncharacterized protein n=1 Tax=Dactylococcopsis salina PCC 8305 RepID=K9YV13_DACSA id=5224799 bin=16ft_combo_ws3_JS1 species=Dactylococcopsis salina genus=Dactylococcopsis taxon_order=Chroococcales taxon_class=unknown phylum=Cyanobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
hypothetical protein Tax=RBG_16_RIF_WS3X_71_46_curated
hypothetical protein
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_5783_6
Microlunatus phosphovorus, Microlunatus, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

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comp(5144..5851)
DNA (708bp) protein (236aa)
infB; translation initiation factor IF-2; K02519 translation initiation factor IF-2 id=24479401 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=unknown taxon_order=unknown taxon_class=Mammalia phylum=Chordata tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
infB; translation initiation factor IF-2
Translation initiation factor IF-2 {ECO:0000256|HAMAP-Rule:MF_00100, ECO:0000256|RuleBase:RU000644}; TaxID=1032480 species="Bacteria; Actinobacteria; Propionibacteriales; Propionibacteriaceae; Microlu
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_5783_7
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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6023..7486
DNA (1464bp) protein (488aa)
Malate dehydrogenase (EC:1.1.1.37) Tax=RBG_16_RIF_WS3X_71_46_curated
Malate dehydrogenase (EC:1.1.1.37)
Malate dehydrogenase n=1 Tax=Accumulibacter phosphatis (strain UW-1) RepID=C7RUG6_ACCPU id=5224797 bin=16ft_combo_ws3_JS1 species=Candidatus Accumulibacter phosphatis genus=Candidatus Accumulibacter taxon_order=unknown taxon_class=Betaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_5783_8
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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7701..9743
DNA (2043bp) protein (681aa)
peptidase M1 membrane alanine aminopeptidase Tax=RBG_16_RIF_WS3X_71_46_curated
peptidase M1 membrane alanine aminopeptidase id=24479404 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Spirosoma linguale genus=Spirosoma taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
peptidase M1 membrane alanine aminopeptidase
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_5783_9
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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comp(9796..10350)
DNA (555bp) protein (185aa)
peptidase, zinc-dependent id=24479405 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
peptidase, zinc-dependent Tax=RBG_16_RIF_WS3X_71_46_curated
peptidase, zinc-dependent
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_5783_10
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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comp(10359..11726)
DNA (1368bp) protein (456aa)
Response regulator id=24479406 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Ignavibacterium album genus=Ignavibacterium taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
Response regulator Tax=RBG_16_RIF_WS3X_71_46_curated
response regulator
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_5783_11
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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comp(11752..13428)
DNA (1677bp) protein (559aa)
periplasmic sensor signal transduction histidine kinase id=24479407 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
periplasmic sensor signal transduction histidine kinase Tax=RBG_16_RIF_WS3X_71_46_curated
sensor signal transduction histidine kinase
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_5783_12
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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comp(13475..13885)
DNA (411bp) protein (137aa)
glycine cleavage system h protein; K02437 glycine cleavage system H protein id=24479408 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=uncultured Desulfobacterium sp. genus=Desulfobacterium taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
glycine cleavage system H protein Tax=RBG_16_RIF_WS3X_71_46_curated
glycine cleavage system H protein
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_5783_13
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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comp(14227..14922)
DNA (696bp) protein (232aa)
glycine cleavage H-protein id=24479409 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
glycine cleavage H-protein Tax=RBG_16_RIF_WS3X_71_46_curated
glycine cleavage H-protein
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_5783_14
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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comp(14926..16224)
DNA (1299bp) protein (433aa)
polysulfide reductase NrfD id=24479410 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
polysulfide reductase NrfD Tax=RBG_16_RIF_WS3X_71_46_curated
hypothetical protein
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_5783_15
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(16187..17236)
DNA (1050bp) protein (350aa)
4Fe-4S ferredoxin, iron-sulfur binding protein id=24479411 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
4Fe-4S ferredoxin, iron-sulfur binding protein Tax=RBG_16_RIF_WS3X_71_46_curated
hypothetical protein
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_5783_16
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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comp(17305..17961)
DNA (657bp) protein (219aa)
glycine cleavage H-protein id=24479412 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
glycine cleavage H-protein Tax=RBG_16_RIF_WS3X_71_46_curated
glycine cleavage H-protein
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_5783_17
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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comp(18300..20600)
DNA (2301bp) protein (767aa)
TonB-dependent receptor plug; K02014 iron complex outermembrane recepter protein id=24479413 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Ignavibacterium album genus=Ignavibacterium taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
TonB-dependent receptor plug; K02014 iron complex outermembrane recepter protein Tax=RBG_16_RIF_WS3X_71_46_curated
TonB-dependent receptor plug
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_5783_18
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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comp(20772..20984)
DNA (213bp) protein (71aa)
Na+/proline symporter id=24479414 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Ignavibacterium album genus=Ignavibacterium taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
Na+/proline symporter Tax=RBG_16_RIF_WS3X_71_46_curated
Displaying 18 items

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