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RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_14373

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Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_14373_1
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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3..1778
DNA (1776bp) protein (592aa)
gidA1; tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; K03495 tRNA uridine 5-carboxymethylaminomethyl modification enzyme Tax=RBG_16_RIF_WS3X_71_46_curated
gidA1; tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; K03495 tRNA uridine 5-carboxymethylaminomethyl modification enzyme id=24561312 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
gidA1; tRNA uridine 5-carboxymethylaminomethyl modification protein GidA
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_14373_2
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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1884..2735
DNA (852bp) protein (284aa)
gidB; 16S rRNA methyltransferase GidB; K03501 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170] Tax=RBG_16_RIF_WS3X_71_46_curated
methyltransferase GidB id=24561313 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=unknown taxon_order=unknown taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
16S rRNA methyltransferase GidB
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_14373_3
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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2882..3643
DNA (762bp) protein (254aa)
soj; hypothetical protein; K03496 chromosome partitioning protein id=24561314 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=Alicyclobacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
soj; hypothetical protein; K03496 chromosome partitioning protein Tax=RBG_16_RIF_WS3X_71_46_curated
soj; Sporulation initiation inhibitor protein soj
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_14373_4
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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3636..4493
DNA (858bp) protein (286aa)
parB-like partition protein; K03497 chromosome partitioning protein, ParB family id=24561315 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
parB-like partition protein; K03497 chromosome partitioning protein, ParB family Tax=RBG_16_RIF_WS3X_71_46_curated
parB-like partition protein
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_14373_5
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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4530..4952
DNA (423bp) protein (141aa)
hypothetical protein id=24561316 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Thermosediminibacter oceani genus=Thermosediminibacter taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
hypothetical protein Tax=RBG_16_RIF_WS3X_71_46_curated
hypothetical protein
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_14373_6
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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4994..6502
DNA (1509bp) protein (503aa)
C-terminal processing peptidase id=24561317 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=Rhodanobacter taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
C-terminal processing peptidase Tax=RBG_16_RIF_WS3X_71_46_curated
C-terminal processing peptidase
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_14373_7
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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6462..7496
DNA (1035bp) protein (345aa)
Putative uncharacterized protein n=1 Tax=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) RepID=A0LJT2_SYNFM id=5223985 bin=16ft_combo_ws3_JS1 species=Syntrophobacter fumaroxidans genus=Syntrophobacter taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
hypothetical protein Tax=RBG_16_RIF_WS3X_71_46_curated
hypothetical protein
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_14373_8
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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comp(7618..8076)
DNA (459bp) protein (153aa)
ISCpe2, transposase orfA id=24561319 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Bifidobacterium catenulatum genus=Bifidobacterium taxon_order=Bifidobacteriales taxon_class=Actinobacteria phylum=Actinobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
ISCpe2, transposase orfA Tax=RBG_16_RIF_WS3X_71_46_curated
ISCpe2, transposase orfA
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_14373_9
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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comp(8185..8787)
DNA (603bp) protein (201aa)
LexA family transcriptional repressor (EC:3.4.21.88); K01356 repressor LexA [EC:3.4.21.88] id=24561320 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Fibrobacter succinogenes genus=Fibrobacter taxon_order=Fibrobacterales taxon_class=Fibrobacteria phylum=Fibrobacteres tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
LexA family transcriptional repressor (EC:3.4.21.88); K01356 repressor LexA [EC:3.4.21.88] Tax=RBG_16_RIF_WS3X_71_46_curated
LexA family transcriptional repressor (EC:3.4.21.88)
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_14373_10
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

9178..9345
DNA (168bp) protein (56aa)
alias=16ft_combo_ws3_scaffold_1578_20 id=24561321 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=16ft_combo_ws3 genus=16ft_combo_ws3 taxon_order=16ft_combo_ws3 taxon_class=16ft_combo_ws3 phylum=WS3 tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
alias=16ft_combo_ws3_scaffold_1578_20 Tax=RBG_16_RIF_WS3X_71_46_curated
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_14373_11
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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9342..10616
DNA (1275bp) protein (425aa)
alias=16ft_combo_ws3_scaffold_1578_19 id=24561322 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=16ft_combo_ws3 genus=16ft_combo_ws3 taxon_order=16ft_combo_ws3 taxon_class=16ft_combo_ws3 phylum=WS3 tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
id=5223981 Tax=RBG_16_RIF_WS3X_71_46_curated
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_14373_12
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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10828..11745
DNA (918bp) protein (306aa)
4-hydroxybenzoate polyprenyltransferase; K03179 4-hydroxybenzoate octaprenyltransferase [EC:2.5.1.-] Tax=RBG_16_RIF_WS3X_71_46_curated
4-hydroxybenzoate polyprenyltransferase n=1 Tax=Archaeoglobus profundus (strain DSM 5631 / JCM 9629 / NBRC 100127 / Av18) RepID=D2RDV9_ARCPA id=5223980 bin=16ft_combo_ws3_JS1 species=Archaeoglobus profundus genus=Archaeoglobus taxon_order=Archaeoglobales taxon_class=Archaeoglobi phylum=Euryarchaeota tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
4-hydroxybenzoate polyprenyltransferase
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_14373_13
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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11747..12301
DNA (555bp) protein (185aa)
3-polyprenyl-4-hydroxybenzoate carboxy-lyase UbiX (EC:4.1.1.-) id=24561324 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Euryarchaeota tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
3-polyprenyl-4-hydroxybenzoate carboxy-lyase UbiX (EC:4.1.1.-) Tax=RBG_16_RIF_WS3X_71_46_curated
3-polyprenyl-4-hydroxybenzoate carboxy-lyase UbiX (EC:4.1.1.-)
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_14373_14
unknown

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comp(13339..13584)
DNA (246bp) protein (82aa)

This feature has no annotations

RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_14373_15
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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13994..14242
DNA (249bp) protein (83aa)
UbiD family decarboxylase id=24561325 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Candidatus Kuenenia stuttgartiensis genus=Candidatus Kuenenia taxon_order=Candidatus Brocadiales taxon_class=Planctomycetia phylum=Planctomycetes tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
UbiD family decarboxylase Tax=RBG_16_RIF_WS3X_71_46_curated
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_14373_16
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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14253..15074
DNA (822bp) protein (274aa)
uncharacterized protein F13E9.13, mitochondrial-like; K06971 id=24561326 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Chordata tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
uncharacterized protein F13E9.13, mitochondrial-like; K06971 Tax=RBG_16_RIF_WS3X_71_46_curated
BtpA family membrane complex biogenesis protein
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_14373_17
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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16144..17055
DNA (912bp) protein (304aa)
Pseudouridine-5'-phosphate glycosidase n=1 Tax=Methylobacterium sp. (strain 4-46) RepID=B0UQ25_METS4 id=5223975 bin=16ft_combo_ws3_JS1 species=Methylobacterium sp. genus=Methylobacterium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
indigoidine synthase A family protein Tax=RBG_16_RIF_WS3X_71_46_curated
indigoidine synthase A family protein
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_14373_18
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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17251..19902
DNA (2652bp) protein (884aa)
membrane associated hydrolase Tax=RBG_16_RIF_WS3X_71_46_curated
membrane associated hydrolase id=24561328 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Melioribacter roseus genus=Melioribacter taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
membrane associated hydrolase
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_14373_19
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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comp(19954..20229)
DNA (276bp) protein (92aa)
Glycosyl transferase family protein n=1 Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1C7G7_SPHTD id=5223973 bin=16ft_combo_ws3_JS1 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
hypothetical protein Tax=RBG_16_RIF_WS3X_71_46_curated
hypothetical protein
Displaying 19 items

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