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RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_2136

Search features with annotation key words

Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_2136_1
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(3..344)
DNA (342bp) protein (114aa)
kbl; glycine C-acetyltransferase (EC:2.3.1.29) Tax=RBG_16_RIF_WS3X_71_46_curated
2-amino-3-ketobutyrate coenzyme A ligase id=24436235 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Fibrella aestuarina genus=Fibrella taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
2-amino-3-ketobutyrate coenzyme A ligase
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_2136_2
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(329..1273)
DNA (945bp) protein (315aa)
tdh; L-threonine 3-dehydrogenase (EC:1.1.1.103); K00060 threonine 3-dehydrogenase [EC:1.1.1.103] id=24436236 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Desmospora sp. 8437 genus=Desmospora taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
tdh; L-threonine 3-dehydrogenase (EC:1.1.1.103); K00060 threonine 3-dehydrogenase [EC:1.1.1.103] Tax=RBG_16_RIF_WS3X_71_46_curated
tdh; L-threonine 3-dehydrogenase (EC:1.1.1.103)
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_2136_3
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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comp(1411..2925)
DNA (1515bp) protein (505aa)
UvrABC system protein A n=1 Tax=Caldithrix abyssi DSM 13497 RepID=H1XXL3_9BACT id=5224102 bin=16ft_combo_ws3_JS1 species=Caldithrix abyssi genus=Caldithrix taxon_order=unknown taxon_class=unknown phylum=unknown tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
excinuclease ABC subunit A; K03701 excinuclease ABC subunit A Tax=RBG_16_RIF_WS3X_71_46_curated
uvrA; UvrABC system protein A
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_2136_4
unknown

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3101..3391
DNA (291bp) protein (97aa)

This feature has no annotations

RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_2136_5
R_Rhodospirillales_65_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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4448..4708
DNA (261bp) protein (87aa)
Uncharacterized protein Tax=RIFCSPLOWO2_01_FULL_Rhodospirillales_65_14_curated
Uncharacterized protein id=24515461 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_2136_6
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(5604..6821)
DNA (1218bp) protein (406aa)
ABC efflux pump, inner membrane subunit id=24436238 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
ABC efflux pump, inner membrane subunit Tax=RBG_16_RIF_WS3X_71_46_curated
efflux ABC transporter inner membrane protein
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_2136_7
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(6964..7665)
DNA (702bp) protein (234aa)
phosphonate-transporting ATPase (EC:3.6.3.28); K02003 putative ABC transport system ATP-binding protein id=24436239 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
phosphonate-transporting ATPase (EC:3.6.3.28); K02003 putative ABC transport system ATP-binding protein Tax=RBG_16_RIF_WS3X_71_46_curated
phosphonate-transporting ATPase (EC:3.6.3.28)
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_2136_8
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(7672..8958)
DNA (1287bp) protein (429aa)
secretion protein HlyD; K02005 HlyD family secretion protein id=24436240 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
secretion protein HlyD; K02005 HlyD family secretion protein Tax=RBG_16_RIF_WS3X_71_46_curated
secretion protein HlyD
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_2136_9
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(8981..10354)
DNA (1374bp) protein (458aa)
outer membrane macrolide efflux protein id=24436241 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Myxococcus stipitatus genus=Myxococcus taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
outer membrane macrolide efflux protein Tax=RBG_16_RIF_WS3X_71_46_curated
outer membrane macrolide efflux protein
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_2136_10
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(10442..11206)
DNA (765bp) protein (255aa)
alias=16ft_combo_ws3_scaffold_16_90 id=24436242 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=16ft_combo_ws3 genus=16ft_combo_ws3 taxon_order=16ft_combo_ws3 taxon_class=16ft_combo_ws3 phylum=WS3 tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
alias=16ft_combo_ws3_scaffold_16_90 Tax=RBG_16_RIF_WS3X_71_46_curated
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_2136_11
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(11500..11820)
DNA (321bp) protein (107aa)
TonB family protein; K03832 periplasmic protein TonB Tax=RBG_16_RIF_WS3X_71_46_curated
TonB family protein; K03832 periplasmic protein TonB id=24436243 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Chloroherpeton thalassium genus=Chloroherpeton taxon_order=Chlorobiales taxon_class=Chlorobia phylum=Chlorobi tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
TonB family protein
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_2136_12
unknown

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11984..12181
DNA (198bp) protein (66aa)

This feature has no annotations

RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_2136_13
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(12216..12713)
DNA (498bp) protein (166aa)
biopolymer transport protein ExbD/TolR id=24436244 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Chloroherpeton thalassium genus=Chloroherpeton taxon_order=Chlorobiales taxon_class=Chlorobia phylum=Chlorobi tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
biopolymer transport protein ExbD/TolR Tax=RBG_16_RIF_WS3X_71_46_curated
biopolymer transport protein ExbD/TolR
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_2136_14
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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comp(12741..13217)
DNA (477bp) protein (159aa)
hypothetical protein id=24436245 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Chlorobium limicola genus=Chlorobium taxon_order=Chlorobiales taxon_class=Chlorobia phylum=Chlorobi tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
hypothetical protein Tax=RBG_16_RIF_WS3X_71_46_curated
hypothetical protein
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_2136_15
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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comp(13230..13973)
DNA (744bp) protein (248aa)
MotA/TolQ/ExbB proton channel family protein; K03561 biopolymer transport protein ExbB id=24436246 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Pelodictyon luteolum genus=Pelodictyon taxon_order=Chlorobiales taxon_class=Chlorobia phylum=Chlorobi tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
MotA/TolQ/ExbB proton channel family protein; K03561 biopolymer transport protein ExbB Tax=RBG_16_RIF_WS3X_71_46_curated
MotA/TolQ/ExbB proton channel family protein
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_2136_16
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(14078..14425)
DNA (348bp) protein (116aa)
anti-anti-sigma factor; K04749 anti-sigma B factor antagonist id=24436247 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
anti-anti-sigma factor; K04749 anti-sigma B factor antagonist Tax=RBG_16_RIF_WS3X_71_46_curated
anti-anti-sigma factor
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_2136_17
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(14422..14703)
DNA (282bp) protein (94aa)
TPR repeat-containing protein n=1 Tax=Cyanothece sp. (strain PCC 8801) RepID=B7K3M3_CYAP8 id=5224114 bin=16ft_combo_ws3_JS1 species=unknown genus=Cyanothece taxon_order=Chroococcales taxon_class=unknown phylum=Cyanobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
hypothetical protein; K12600 superkiller protein 3 Tax=RBG_16_RIF_WS3X_71_46_curated
hypothetical protein
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_2136_18
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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comp(16183..17190)
DNA (1008bp) protein (336aa)
Phosphate binding protein n=1 Tax=Syntrophothermus lipocalidus (strain DSM 12680 / TGB-C1) RepID=D7CK35_SYNLT id=5224115 bin=16ft_combo_ws3_JS1 species=Syntrophothermus lipocalidus genus=Syntrophothermus taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
phosphate binding protein; K02040 phosphate transport system substrate-binding protein Tax=RBG_16_RIF_WS3X_71_46_curated
phosphate binding protein
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_2136_19
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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17566..18918
DNA (1353bp) protein (451aa)
hypothetical protein id=24436250 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Sorangium cellulosum genus=Sorangium taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
hypothetical protein Tax=RBG_16_RIF_WS3X_71_46_curated
hypothetical protein
Displaying 19 items

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