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RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_28253

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Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_28253_1
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(1..87)
DNA (87bp) protein (29aa)
undecaprenyl pyrophosphate synthetase (EC:2.5.1.31); K00806 undecaprenyl diphosphate synthase [EC:2.5.1.31] Tax=RBG_16_RIF_WS3X_71_46_curated
Isoprenyl transferase id=24582815 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Moorella thermoacetica genus=Moorella taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_28253_2
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(140..697)
DNA (558bp) protein (186aa)
ribosome recycling factor; K02838 ribosome recycling factor id=24582816 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Symbiobacterium thermophilum genus=Symbiobacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
ribosome recycling factor; K02838 ribosome recycling factor Tax=RBG_16_RIF_WS3X_71_46_curated
ribosome recycling factor
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_28253_3
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(694..1407)
DNA (714bp) protein (238aa)
pyrH; uridylate kinase (EC:2.7.4.-); K09903 uridylate kinase [EC:2.7.4.22] id=24582817 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Desulfuromonas acetoxidans genus=Desulfuromonas taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
pyrH; uridylate kinase; K09903 uridylate kinase [EC:2.7.4.22] Tax=RBG_16_RIF_WS3X_71_46_curated
pyrH; uridylate kinase (EC:2.7.4.22)
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_28253_4
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(1412..2008)
DNA (597bp) protein (199aa)
elongation factor Ts; K02357 elongation factor Ts id=24582818 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Desulfotomaculum kuznetsovii genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
elongation factor Ts; K02357 elongation factor Ts Tax=RBG_16_RIF_WS3X_71_46_curated
elongation factor Ts
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_28253_5
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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comp(2085..2849)
DNA (765bp) protein (255aa)
rpsB; 30S ribosomal protein S2; K02967 small subunit ribosomal protein S2 id=24582819 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
rpsB; 30S ribosomal protein S2; K02967 small subunit ribosomal protein S2 Tax=RBG_16_RIF_WS3X_71_46_curated
rpsB; 30S ribosomal protein S2
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_28253_6
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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comp(2979..3377)
DNA (399bp) protein (133aa)
rpsI; SSU ribosomal protein S9p (S16e) id=24582820 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=Dehalobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
rpsI; SSU ribosomal protein S9p (S16e) Tax=RBG_16_RIF_WS3X_71_46_curated
rpsI; SSU ribosomal protein S9p (S16e)
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_28253_7
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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comp(3397..3828)
DNA (432bp) protein (144aa)
50S ribosomal protein L13; K02871 large subunit ribosomal protein L13 id=24582821 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Marinitoga piezophila genus=Marinitoga taxon_order=Thermotogales taxon_class=Thermotogae phylum=Thermotogae tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
50S ribosomal protein L13; K02871 large subunit ribosomal protein L13 Tax=RBG_16_RIF_WS3X_71_46_curated
50S ribosomal protein L13
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_28253_8
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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comp(4004..4372)
DNA (369bp) protein (123aa)
septum formation protein Maf; K06287 septum formation protein id=24582822 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Symbiobacterium thermophilum genus=Symbiobacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
maf; septum formation protein Maf; K06287 septum formation protein Tax=RBG_16_RIF_WS3X_71_46_curated
maf; septum formation protein Maf
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_28253_9
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(4380..4577)
DNA (198bp) protein (66aa)
Maf-like protein STH370 id=24582823 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Symbiobacterium thermophilum genus=Symbiobacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
maf; septum formation protein Maf; K06287 septum formation protein Tax=RBG_16_RIF_WS3X_71_46_curated
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_28253_10
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(4574..5020)
DNA (447bp) protein (149aa)
D-tyrosyl-tRNA(Tyr) deacylase; K07560 D-tyrosyl-tRNA(Tyr) deacylase [EC:3.1.-.-] id=24582824 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
D-tyrosyl-tRNA(Tyr) deacylase; K07560 D-tyrosyl-tRNA(Tyr) deacylase [EC:3.1.-.-] Tax=RBG_16_RIF_WS3X_71_46_curated
D-tyrosyl-tRNA(Tyr) deacylase
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_28253_11
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(5043..7256)
DNA (2214bp) protein (738aa)
relA; GTP pyrophosphokinase (EC:2.7.6.5); K00951 GTP pyrophosphokinase [EC:2.7.6.5] Tax=RBG_16_RIF_WS3X_71_46_curated
relA; GTP pyrophosphokinase (EC:2.7.6.5)
GTP pyrophosphokinase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A4H2_GEMAT id=5224208 bin=16ft_combo_ws3_JS1 species=Gemmatimonas aurantiaca genus=Gemmatimonas taxon_order=Gemmatimonadales taxon_class=Gemmatimonadetes phylum=Gemmatimonadetes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_28253_12
Firmicutes bacterium CAG:129, Firmicutes, Bacteria

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7409..8809
DNA (1401bp) protein (467aa)
hypothetical protein id=24582826 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Firmicutes tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
Uncharacterized protein {ECO:0000313|EMBL:CCZ46666.1}; TaxID=1263003 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:129.;"
hypothetical protein
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_28253_13
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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comp(8993..9526)
DNA (534bp) protein (178aa)
hypothetical protein id=24582827 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
hypothetical protein Tax=RBG_16_RIF_WS3X_71_46_curated
hypothetical protein
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_28253_14
unknown

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9621..9842
DNA (222bp) protein (74aa)

This feature has no annotations

RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_28253_15
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(11378..11830)
DNA (453bp) protein (151aa)
ribonuclease H; K15634 probable phosphoglycerate mutase [EC:5.4.2.1] Tax=RBG_16_RIF_WS3X_71_46_curated
Putative SAM-dependent methyltransferase n=1 Tax=Thermaerobacter subterraneus DSM 13965 RepID=K6PQ68_9FIRM id=5224211 bin=16ft_combo_ws3_JS1 species=Thermaerobacter subterraneus genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
ribonuclease H
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_28253_16
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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comp(11844..12485)
DNA (642bp) protein (214aa)
patatin Tax=RBG_16_RIF_WS3X_71_46_curated
patatin; K07001 NTE family protein id=24582829 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Massilia timonae genus=Massilia taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_28253_17
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(12473..13240)
DNA (768bp) protein (256aa)
patatin id=24582830 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Massilia timonae genus=Massilia taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
patatin Tax=RBG_16_RIF_WS3X_71_46_curated
pyridine nucleotide-disulfide oxidoreductase family protein
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_28253_18
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(13291..14049)
DNA (759bp) protein (253aa)
hypothetical protein id=24582831 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
hypothetical protein Tax=RBG_16_RIF_WS3X_71_46_curated
hypothetical protein
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_28253_trna_2
unknown

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comp(14207..14279)
DNA (73bp)
transferRNA
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_28253_trna_1
unknown

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comp(14324..14397)
DNA (74bp)
transferRNA
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_28253_19
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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comp(14600..16405)
DNA (1806bp) protein (602aa)
rpoD; RNA polymerase sigma factor RpoD; K03086 RNA polymerase primary sigma factor Tax=RBG_16_RIF_WS3X_71_46_curated
rpoD; RNA polymerase sigma factor RpoD; K03086 RNA polymerase primary sigma factor id=24582832 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Sorangium cellulosum genus=Sorangium taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
rpoD; RNA polymerase sigma factor RpoD
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_28253_20
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(16420..16566)
DNA (147bp) protein (49aa)
DNA primase; K02316 DNA primase [EC:2.7.7.-] Tax=RBG_16_RIF_WS3X_71_46_curated
DNA primase id=24582833 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_28253_21
unknown

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17029..17337
DNA (309bp) protein (103aa)
id=24582834 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
id=24582834 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_28253_22
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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comp(17612..18139)
DNA (528bp) protein (176aa)
DNA primase; K02316 DNA primase [EC:2.7.7.-] id=24582835 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
DNA primase; K02316 DNA primase [EC:2.7.7.-] Tax=RBG_16_RIF_WS3X_71_46_curated
DNA primase (EC:2.7.7.-)
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_28253_23
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(18136..19203)
DNA (1068bp) protein (356aa)
MutS2 protein n=1 Tax=Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2) RepID=MUTS2_THERP id=5224216 bin=16ft_combo_ws3_JS1 species=Thermomicrobium roseum genus=Thermomicrobium taxon_order=Thermomicrobiales taxon_class=Thermomicrobia phylum=Chloroflexi tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
MutS2 family protein; K07456 DNA mismatch repair protein MutS2 Tax=RBG_16_RIF_WS3X_71_46_curated
MutS2 family protein
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_28253_24
RBG_16_Chloroflexi_51_9_curated, Chloroflexi, Bacteria

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19308..20102
DNA (795bp) protein (265aa)
Uncharacterized protein Tax=RBG_16_Chloroflexi_51_9_curated
Displaying 26 items

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