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RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_2450

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Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_2450_1
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(132..1499)
DNA (1368bp) protein (456aa)
Sodium/hydrogen exchanger id=24447344 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
Sodium/hydrogen exchanger Tax=RBG_16_RIF_WS3X_71_46_curated
Sodium/hydrogen exchanger
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_2450_2
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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1629..3215
DNA (1587bp) protein (529aa)
alpha,alpha-trehalose-phosphate synthase (UDP-forming) (EC:2.4.1.15); K00697 trehalose 6-phosphate synthase [EC:2.4.1.15] Tax=RBG_16_RIF_WS3X_71_46_curated
alpha,alpha-trehalose-phosphate synthase (UDP-forming) (EC:2.4.1.15)
Alpha,alpha-trehalose-phosphate synthase (UDP-forming) n=2 Tax=Rubrivivax RepID=I0HRR1_RUBGI id=5225752 bin=16ft_combo_ws3_JS1 species=unknown genus=Rubrivivax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_2450_3
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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3712..4110
DNA (399bp) protein (133aa)
alias=16ft_combo_ws3_scaffold_896_4 id=24447346 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=16ft_combo_ws3 genus=16ft_combo_ws3 taxon_order=16ft_combo_ws3 taxon_class=16ft_combo_ws3 phylum=WS3 tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
alias=16ft_combo_ws3_scaffold_896_4 Tax=RBG_16_RIF_WS3X_71_46_curated
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_2450_4
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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4174..4605
DNA (432bp) protein (144aa)
Plastoquinol--plastocyanin reductase (EC:1.10.9.1) Tax=RBG_16_RIF_WS3X_71_46_curated
Plastoquinol--plastocyanin reductase (EC:1.10.9.1)
Cytochrome b6-f complex iron-sulfur subunit n=1 Tax=uncultured Acidobacteria bacterium RepID=G8DPL3_9BACT id=5225750 bin=16ft_combo_ws3_JS1 species=uncultured Acidobacteria bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_2450_5
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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4605..5678
DNA (1074bp) protein (358aa)
Cytochrome bc complex cytochrome b subunit n=1 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MLL7_9BACT id=5225749 bin=16ft_combo_ws3_JS1 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
petB; cytochrome bc complex cytochrome b subunit Tax=RBG_16_RIF_WS3X_71_46_curated
petB; cytochrome bc complex cytochrome b subunit
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_2450_6
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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5675..6925
DNA (1251bp) protein (417aa)
Uncharacterized protein n=1 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MLL8_9BACT id=5225748 bin=16ft_combo_ws3_JS1 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
hypothetical protein Tax=RBG_16_RIF_WS3X_71_46_curated
hypothetical protein
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_2450_7
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(7166..9727)
DNA (2562bp) protein (854aa)
cytochrome C family protein id=24447350 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Desulfuromonas acetoxidans genus=Desulfuromonas taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
cytochrome C family protein Tax=RBG_16_RIF_WS3X_71_46_curated
cytochrome C family protein
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_2450_8
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(10310..10897)
DNA (588bp) protein (196aa)
alias=16ft_combo_ws3_scaffold_16184_2 id=24447351 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=16ft_combo_ws3 genus=16ft_combo_ws3 taxon_order=16ft_combo_ws3 taxon_class=16ft_combo_ws3 phylum=WS3 tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
alias=16ft_combo_ws3_scaffold_16184_2 Tax=RBG_16_RIF_WS3X_71_46_curated
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_2450_9
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(10894..11487)
DNA (594bp) protein (198aa)
Putative uncharacterized protein id=24447352 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
Putative uncharacterized protein Tax=RBG_16_RIF_WS3X_71_46_curated
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_2450_10
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(11509..12111)
DNA (603bp) protein (201aa)
Putative uncharacterized protein n=1 Tax=Geobacter uraniireducens (strain Rf4) RepID=A5GFH7_GEOUR id=5224234 bin=16ft_combo_ws3_JS1 species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
lipoprotein Tax=RBG_16_RIF_WS3X_71_46_curated
hypothetical protein
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_2450_11
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(12108..12761)
DNA (654bp) protein (218aa)
id=5224235 Tax=RBG_16_RIF_WS3X_71_46_curated
id=5224235 bin=16ft_combo_ws3_JS1 species=16ft_combo_ws3 genus=16ft_combo_ws3 taxon_order=16ft_combo_ws3 taxon_class=16ft_combo_ws3 phylum=WS3 tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_2450_12
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(13812..14081)
DNA (270bp) protein (90aa)
Putative uncharacterized protein id=24447355 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
Putative uncharacterized protein Tax=RBG_16_RIF_WS3X_71_46_curated
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_2450_13
unknown

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14304..15260
DNA (957bp) protein (319aa)

This feature has no annotations

RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_2450_14
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(15343..16443)
DNA (1101bp) protein (367aa)
alias=16ft_combo_ws3_scaffold_16184_7 id=24447356 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=16ft_combo_ws3 genus=16ft_combo_ws3 taxon_order=16ft_combo_ws3 taxon_class=16ft_combo_ws3 phylum=WS3 tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
alias=16ft_combo_ws3_scaffold_16184_7 Tax=RBG_16_RIF_WS3X_71_46_curated
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_2450_15
unknown

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comp(16461..16571)
DNA (111bp) protein (37aa)
id=24447357 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
id=24447357 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_2450_16
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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comp(16568..17614)
DNA (1047bp) protein (349aa)
NHL repeat-containing protein id=24447358 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Cyanobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
NHL repeat-containing protein Tax=RBG_16_RIF_WS3X_71_46_curated
cell surface protein
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_2450_17
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

18255..20444
DNA (2190bp) protein (730aa)
cytochrome c assembly protein; K02198 cytochrome c-type biogenesis protein CcmF id=24447359 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
cytochrome c assembly protein; K02198 cytochrome c-type biogenesis protein CcmF Tax=RBG_16_RIF_WS3X_71_46_curated
cytochrome c assembly protein
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_2450_18
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

20580..21050
DNA (471bp) protein (157aa)
Rieske 2Fe-2S family protein n=1 Tax=uncultured candidate division OP1 bacterium RepID=H5STX6_9BACT id=5224241 bin=16ft_combo_ws3_JS1 species=uncultured candidate division OP1 bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
Rieske (2Fe-2S) domain-containing protein Tax=RBG_16_RIF_WS3X_71_46_curated
Rieske (2Fe-2S) domain-containing protein
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_2450_19
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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21207..22190
DNA (984bp) protein (328aa)
qcrB; quinol-cytochrome c reductase, fused cytochrome b/c subunit (EC:1.10.2.2); K00412 ubiquinol-cytochrome c reductase cytochrome b subunit Tax=RBG_16_RIF_WS3X_71_46_curated
qcrB; quinol-cytochrome c reductase, fused cytochrome b/c subunit (EC:1.10.2.2); K00412 ubiquinol-cytochrome c reductase cytochrome b subunit id=24447361 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
qcrB; quinol-cytochrome c reductase, fused cytochrome b/c subunit (EC:1.10.2.2)
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_2450_20
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

22187..23461
DNA (1275bp) protein (425aa)
hypothetical protein id=24447362 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
hypothetical protein Tax=RBG_16_RIF_WS3X_71_46_curated
hypothetical protein
Displaying 20 items

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