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RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_2582

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Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_2582_1
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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1..1905
DNA (1905bp) protein (635aa)
hypothetical protein id=24437363 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Pseudoxanthomonas spadix genus=Pseudoxanthomonas taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
hypothetical protein Tax=RBG_16_RIF_WS3X_71_46_curated
putative amylo-alpha-1,6-glucosidase family protein
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_2582_2
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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comp(1987..3345)
DNA (1359bp) protein (453aa)
beta-galactosidase id=24437364 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=Rhodanobacter taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
beta-galactosidase Tax=RBG_16_RIF_WS3X_71_46_curated
beta-glucosidase
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_2582_3
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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3705..5609
DNA (1905bp) protein (635aa)
Uncharacterized protein n=1 Tax=Ignavibacterium album (strain DSM 19864 / JCM 16511 / NBRC 101810 / Mat9-16) RepID=I0AIT2_IGNAJ id=5223537 bin=16ft_combo_ws3_JS1 species=Ignavibacterium album genus=Ignavibacterium taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
hypothetical protein Tax=RBG_16_RIF_WS3X_71_46_curated
hypothetical protein
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_2582_4
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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5707..8370
DNA (2664bp) protein (888aa)
TonB-dependent receptor Tax=RBG_16_RIF_WS3X_71_46_curated
TonB-dependent receptor id=24437367 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Ignavibacterium album genus=Ignavibacterium taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
TonB-dependent receptor
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_2582_5
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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8367..11675
DNA (3309bp) protein (1103aa)
hypothetical protein id=24437368 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Ignavibacterium album genus=Ignavibacterium taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
hypothetical protein Tax=RBG_16_RIF_WS3X_71_46_curated
hypothetical protein
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_2582_6
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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11690..12709
DNA (1020bp) protein (340aa)
hypothetical protein id=24437369 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Ignavibacterium album genus=Ignavibacterium taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
hypothetical protein Tax=RBG_16_RIF_WS3X_71_46_curated
hypothetical protein
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_2582_7
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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12763..14322
DNA (1560bp) protein (520aa)
hypothetical protein id=24437370 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Spirosoma linguale genus=Spirosoma taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
hypothetical protein Tax=RBG_16_RIF_WS3X_71_46_curated
hypothetical protein
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_2582_8
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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15824..18271
DNA (2448bp) protein (816aa)
cellobiose-phosphorylase; K13688 cyclic beta-1,2-glucan synthetase [EC:2.4.1.-] Tax=RBG_16_RIF_WS3X_71_46_curated
cellobiose phosphorylase id=24437372 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Verrucomicrobium spinosum genus=Verrucomicrobium taxon_order=Verrucomicrobiales taxon_class=Verrucomicrobiae phylum=Verrucomicrobia tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
cellobiose phosphorylase
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_2582_9
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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18572..19375
DNA (804bp) protein (268aa)
alias=16ft_combo_ws3_scaffold_136_20 id=24437373 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=16ft_combo_ws3 genus=16ft_combo_ws3 taxon_order=16ft_combo_ws3 taxon_class=16ft_combo_ws3 phylum=WS3 tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
alias=16ft_combo_ws3_scaffold_136_20 Tax=RBG_16_RIF_WS3X_71_46_curated
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_2582_10
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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19646..19810
DNA (165bp) protein (55aa)
alias=16ft_combo_ws3_scaffold_136_19 id=24437374 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=16ft_combo_ws3 genus=16ft_combo_ws3 taxon_order=16ft_combo_ws3 taxon_class=16ft_combo_ws3 phylum=WS3 tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
id=5223530 Tax=RBG_16_RIF_WS3X_71_46_curated
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_2582_11
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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comp(19946..20317)
DNA (372bp) protein (124aa)
hypothetical protein id=24437375 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Hyphomicrobium denitrificans genus=Hyphomicrobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
hypothetical protein Tax=RBG_16_RIF_WS3X_71_46_curated
hypothetical protein
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_2582_12
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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comp(20355..21353)
DNA (999bp) protein (333aa)
NAD-dependent epimerase/dehydratase id=24437376 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
NAD-dependent epimerase/dehydratase Tax=RBG_16_RIF_WS3X_71_46_curated
NAD-dependent epimerase/dehydratase
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_2582_13
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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22482..23021
DNA (540bp) protein (180aa)
hypothetical protein
hypothetical protein id=24437379 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=Brevibacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
hypothetical protein Tax=RBG_16_RIF_WS3X_71_46_curated
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_2582_14
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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23209..23838
DNA (630bp) protein (210aa)
hypothetical protein id=24437380 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Pedosphaera parvula genus=Pedosphaera taxon_order=Verrucomicrobiales taxon_class=Verrucomicrobiae phylum=Verrucomicrobia tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
hypothetical protein Tax=RBG_16_RIF_WS3X_71_46_curated
hypothetical protein
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_2582_15
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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23931..25214
DNA (1284bp) protein (428aa)
DEAD/DEAH box helicase; K11927 ATP-dependent RNA helicase RhlE [EC:3.6.4.13] id=24437381 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
DEAD/DEAH box helicase; K11927 ATP-dependent RNA helicase RhlE [EC:3.6.4.13] Tax=RBG_16_RIF_WS3X_71_46_curated
DEAD/DEAH box helicase
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_2582_16
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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25480..26880
DNA (1401bp) protein (467aa)
FAD linked oxidase domain-containing protein id=24437382 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Shewanella loihica genus=Shewanella taxon_order=Alteromonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
FAD linked oxidase domain-containing protein Tax=RBG_16_RIF_WS3X_71_46_curated
FAD linked oxidase domain-containing protein
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_2582_17
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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27320..28732
DNA (1413bp) protein (471aa)
glutamate dehydrogenase; K00262 glutamate dehydrogenase (NADP+) [EC:1.4.1.4] Tax=RBG_16_RIF_WS3X_71_46_curated
Glutamate dehydrogenase n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IT55_KORVE id=5223521 bin=16ft_combo_ws3_JS1 species=Candidatus Koribacter versatilis genus=Candidatus Koribacter taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
glutamate dehydrogenase
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_2582_18
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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28805..31789
DNA (2985bp) protein (995aa)
response regulator receiver protein Tax=RBG_16_RIF_WS3X_71_46_curated
response regulator receiver protein id=24437384 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
response regulator receiver protein
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_2582_19
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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comp(31854..33008)
DNA (1155bp) protein (385aa)
3-oxoacyl-(acyl-carrier-protein) synthase III (EC:2.3.1.41); K00648 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180] id=24437385 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Thermaerobacter marianensis genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
3-oxoacyl-(acyl-carrier-protein) synthase III (EC:2.3.1.41); K00648 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180] Tax=RBG_16_RIF_WS3X_71_46_curated
3-oxoacyl-(acyl-carrier-protein) synthase III (EC:2.3.1.41)
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_2582_20
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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33230..33448
DNA (219bp) protein (73aa)
alias=16ft_combo_ws3_scaffold_136_7 id=24437386 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=16ft_combo_ws3 genus=16ft_combo_ws3 taxon_order=16ft_combo_ws3 taxon_class=16ft_combo_ws3 phylum=WS3 tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
alias=16ft_combo_ws3_scaffold_136_7 Tax=RBG_16_RIF_WS3X_71_46_curated
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_2582_21
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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comp(33458..34933)
DNA (1476bp) protein (492aa)
hypothetical protein id=24437387 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Anaeromyxobacter dehalogenans genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
hypothetical protein Tax=RBG_16_RIF_WS3X_71_46_curated
hypothetical protein
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_2582_22
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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comp(35018..37084)
DNA (2067bp) protein (689aa)
arginine decarboxylase (EC:4.1.1.19) Tax=RBG_16_RIF_WS3X_71_46_curated
arginine decarboxylase (EC:4.1.1.19) id=24437388 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Cyanobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
arginine decarboxylase (EC:4.1.1.19)
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_2582_23
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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37702..38238
DNA (537bp) protein (179aa)
putative proline dehydrogenase; K00318 proline dehydrogenase [EC:1.5.99.8] id=24437389 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
putative proline dehydrogenase; K00318 proline dehydrogenase [EC:1.5.99.8] Tax=RBG_16_RIF_WS3X_71_46_curated
putative proline dehydrogenase
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_2582_24
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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38540..40189
DNA (1650bp) protein (550aa)
Indolepyruvate ferredoxin oxidoreductase (EC:1.2.7.8); K00179 indolepyruvate ferredoxin oxidoreductase, alpha subunit [EC:1.2.7.8] Tax=RBG_16_RIF_WS3X_71_46_curated
Indolepyruvate ferredoxin oxidoreductase (EC:1.2.7.8); K00179 indolepyruvate ferredoxin oxidoreductase, alpha subunit [EC:1.2.7.8] id=24437390 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Treponema primitia genus=Treponema taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
Indolepyruvate ferredoxin oxidoreductase (EC:1.2.7.8)
RBG_19FT_COMBO_WS3_70_11_rbg_19ft_combo_scaffold_2582_25
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

40615..40737
DNA (123bp) protein (41aa)
Indolepyruvate ferredoxin oxidoreductase (EC:1.2.7.8); K00180 indolepyruvate ferredoxin oxidoreductase, beta subunit [EC:1.2.7.8] Tax=RBG_16_RIF_WS3X_71_46_curated
Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, gamma subunit (EC:1.2.7.8) id=24437391 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Treponema brennaborense genus=Treponema taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
Displaying 25 items

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