ggKbase home page

rifcsphigho2_01_scaffold_2670

Search features with annotation key words

Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsphigho2_01_scaffold_2670_1
RBG_16_Micrarchaeota_36_9_curated, Micrarchaeota, Archaea

Not on your lists

comp(1..15054)
-----------------
DNA (15054bp)
protein (5018aa)
hypothetical protein Tax=RBG_16_Micrarchaeota_36_9_curated
parallel beta-helix repeat-containing protein id=5048026 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
rifcsphigho2_01_scaffold_2670_2
Taeniopygia guttata, Taeniopygia, Passeriformes, Aves, Chordata, Metazoa

Not on your lists

15134..15364
-----------------
DNA (231bp)
protein (77aa)
Uncharacterized protein (Fragment) n=1 Tax=Taeniopygia guttata RepID=H0YUU4_TAEGU
Uncharacterized protein {ECO:0000313|Ensembl:ENSTGUP00000002064}; Flags: Fragment;; TaxID=59729 species="Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; D
rifcsphigho2_01_scaffold_2670_3
unknown

Not on your lists

15719..16207
-----------------
DNA (489bp)
protein (163aa)

This feature has no annotations

rifcsphigho2_01_scaffold_2670_4
unknown

Not on your lists

16578..17204
-----------------
DNA (627bp)
protein (209aa)

This feature has no annotations

rifcsphigho2_01_scaffold_2670_5
unknown

Not on your lists

comp(17399..18427)
-----------------
DNA (1029bp)
protein (343aa)

This feature has no annotations

rifcsphigho2_01_scaffold_2670_6
CG_Micra_04, Micraarchaeota, Archaea

Not on your lists

18584..19717
-----------------
DNA (1134bp)
protein (378aa)
Preprotein translocase, subunit SecF n=1 Tax=mine drainage metagenome RepID=T1AWN3_9ZZZZ
SecD/SecF/SecDF export membrane protein; K03074 preprotein translocase subunit SecF Tax=CG_Micra_04
preprotein translocase subunit SecF
rifcsphigho2_01_scaffold_2670_7
CG_Micra_06, Micraarchaeota, Archaea

Not on your lists

19733..21337
-----------------
DNA (1605bp)
protein (535aa)
SecD/SecF/SecDF export membrane protein n=1 Tax=Candidatus Micrarchaeum acidiphilum ARMAN-2 RepID=C7DGM7_9EURY rbh
SecD-like protein-export membrane protein; K03072 preprotein translocase subunit SecD Tax=CG_Micra_06
preprotein translocase subunit SecD
rifcsphigho2_01_scaffold_2670_8
unknown

Not on your lists

21448..22428
-----------------
DNA (981bp)
protein (327aa)

This feature has no annotations

rifcsphigho2_01_scaffold_2670_9
Rubrobacter xylanophilus, Rubrobacter, Rubrobacterales, Rubrobacteria, Actinobacteria, Bacteria

Not on your lists

22425..23606
-----------------
DNA (1182bp)
protein (394aa)
methionine synthase (B12-independent) (EC:2.1.1.14)
Methionine synthase (B12-independent) {ECO:0000313|EMBL:ABG03808.1}; EC=2.1.1.14 {ECO:0000313|EMBL:ABG03808.1};; TaxID=266117 species="Bacteria; Actinobacteria; Rubrobacteria; Rubrobacterales; Rubroba
Methionine synthase (B12-independent) n=1 Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=Q1AXS0_RUBXD
rifcsphigho2_01_scaffold_2670_10
CG_Micra_01, Micraarchaeota, Archaea

Not on your lists

23625..24485
-----------------
DNA (861bp)
protein (287aa)
Uncharacterized protein n=1 Tax=mine drainage metagenome RepID=T1BEG4_9ZZZZ
hypothetical protein Tax=CG_Micra_01
hypothetical protein
rifcsphigho2_01_scaffold_2670_11
CG_Micra_04, Micraarchaeota, Archaea

Not on your lists

24917..25621
-----------------
DNA (705bp)
protein (235aa)
ribonuclease HII (EC:3.1.26.4); K03470 ribonuclease HII [EC:3.1.26.4] Tax=CG_Micra_04
Ribonuclease HII n=1 Tax=Methanocaldococcus infernus (strain DSM 11812 / JCM 15783 / ME) RepID=D5VQL5_METIM
ribonuclease HII
rifcsphigho2_01_scaffold_2670_12
CG_Micra_06, Micraarchaeota, Archaea

Not on your lists

comp(25711..27849)
-----------------
DNA (2139bp)
protein (713aa)
Uncharacterized protein n=1 Tax=Uncultured methanogenic archaeon RC-I RepID=Q0W781_UNCMA
hypothetical protein Tax=CG_Micra_06
hypothetical protein
rifcsphigho2_01_scaffold_2670_13
Prevotella sp. CAG:279, Prevotella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(27884..28096)
-----------------
DNA (213bp)
protein (71aa)
Uncharacterized protein n=1 Tax=Prevotella sp. CAG:279 RepID=R7HPZ3_9BACT
Uncharacterized protein {ECO:0000313|EMBL:CDE41450.1}; TaxID=1262924 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prevotellaceae; Prevotella; environmental samples.;" source="Prevotel
hypothetical protein
rifcsphigho2_01_scaffold_2670_14
CG_Micra_06, Micraarchaeota, Archaea

Not on your lists

comp(28230..29732)
-----------------
DNA (1503bp)
protein (501aa)
Glycosyltransferase, group 1 family protein n=1 Tax=Clostridiales bacterium oral taxon 876 str. F0540 RepID=U2DGX6_9FIRM
glycosyl transferase group 1 Tax=CG_Micra_06
glycosyl transferase group 1
rifcsphigho2_01_scaffold_2670_15
CG_Micra_06, Micraarchaeota, Archaea

Not on your lists

comp(29830..31185)
-----------------
DNA (1356bp)
protein (452aa)
alpha-amylase; K07405 alpha-amylase [EC:3.2.1.1] Tax=CG_Micra_06
Alpha-amylase/alpha-mannosidase n=1 Tax=Methanomethylovorans hollandica (strain DSM 15978 / NBRC 107637 / DMS1) RepID=L0KZC2_METHD rbh
alpha-amylase/alpha-mannosidase
rifcsphigho2_01_scaffold_2670_16
unknown

Not on your lists

comp(31175..31582)
-----------------
DNA (408bp)
protein (136aa)

This feature has no annotations

rifcsphigho2_01_scaffold_2670_17
CG_Micra_06, Micraarchaeota, Archaea

Not on your lists

comp(31717..32886)
-----------------
DNA (1170bp)
protein (390aa)
glycosyltransferase (EC:2.4.1.21) Tax=CG_Micra_06
4-alpha-glucanotransferase (EC:2.4.1.25); K00705 4-alpha-glucanotransferase [EC:2.4.1.25] id=5043627 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
glycosyl transferase group 1
rifcsphigho2_01_scaffold_2670_18

Not on your lists

comp(33256..36156)
-----------------
DNA (2901bp)
protein (967aa)
leucyl-tRNA synthetase; K01869 leucyl-tRNA synthetase [EC:6.1.1.4] id=18248720 bin=AR5_curated_draft species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=AR5_curated_draft organism_group=Archaeon organism_desc=Curated draft
Leucine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00049}; EC=6.1.1.4 {ECO:0000256|HAMAP-Rule:MF_00049};; Leucyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00049}; TaxID=1579367 species="Archaea.;" sourc
leucyl-tRNA synthetase (EC:6.1.1.9)
rifcsphigho2_01_scaffold_2670_19
unknown

Not on your lists

36238..36564
-----------------
DNA (327bp)
protein (109aa)

This feature has no annotations

rifcsphigho2_01_scaffold_2670_20
CG_Micra_06, Micraarchaeota, Archaea

Not on your lists


comp(36938..38245)
-----------------
DNA (1308bp)
protein (436aa)
GTP-binding signal recognition particle SRP54 G-domain n=1 Tax=Candidatus Micrarchaeum acidiphilum ARMAN-2 RepID=C7DI21_9EURY
signal recognition particle protein Srp54 Tax=CG_Micra_06
SRP54-type protein, GTPase protein
rifcsphigho2_01_scaffold_2670_21
unknown

Not on your lists

comp(38822..39085)
-----------------
DNA (264bp)
protein (88aa)

This feature has no annotations

rifcsphigho2_01_scaffold_2670_22
CG_Micra_04, Micraarchaeota, Archaea

Not on your lists

comp(39220..40041)
-----------------
DNA (822bp)
protein (274aa)
Tax=CG_Micra_04
rifcsphigho2_01_scaffold_2670_23
CG_Micra_06, Micraarchaeota, Archaea

Not on your lists

comp(40053..40286)
-----------------
DNA (234bp)
protein (78aa)
50S ribosomal protein L37Ae n=1 Tax=Methanocaldococcus fervens (strain DSM 4213 / JCM 157852 / AG86) RepID=C7P9F3_METFA
ribosomal protein, large subunit, putative; K02921 large subunit ribosomal protein L37Ae Tax=CG_Micra_06
rpl37ae; 50S ribosomal protein L37Ae
rifcsphigho2_01_scaffold_2670_24
CG_Micra_04, Micraarchaeota, Archaea

Not on your lists

comp(40391..41167)
-----------------
DNA (777bp)
protein (259aa)
rpr41; exosome RNA binding protein (EC:3.1.13.-)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI00036E0285
rrp42; exosome complex RNA-binding protein Rrp42 Tax=CG_Micra_04
rifcsphigho2_01_scaffold_2670_25
CG_Micra_06, Micraarchaeota, Archaea

Not on your lists

comp(41164..41877)
-----------------
DNA (714bp)
protein (238aa)
Exosome complex exonuclease 1 (Fragment) n=1 Tax=mine drainage metagenome RepID=T1AUH6_9ZZZZ
exosome complex exonuclease Rrp41; K11600 exosome complex component RRP41 Tax=CG_Micra_06
exosome complex exonuclease 1
rifcsphigho2_01_scaffold_2670_26
CG_Micra_06, Micraarchaeota, Archaea

Not on your lists

comp(42001..42603)
-----------------
DNA (603bp)
protein (201aa)
Exosome complex component Rrp4 n=1 Tax=Uncultured methanogenic archaeon RC-I RepID=Q0W2Y9_UNCMA
exosome complex RNA-binding protein Rrp4; K03679 exosome complex component RRP4 Tax=CG_Micra_06
exosome complex RNA-binding protein Rrp4
rifcsphigho2_01_scaffold_2670_27
unknown

Not on your lists

comp(42769..43611)
-----------------
DNA (843bp)
protein (281aa)

This feature has no annotations

rifcsphigho2_01_scaffold_2670_28
unknown

Not on your lists

comp(43562..44821)
-----------------
DNA (1260bp)
protein (420aa)

This feature has no annotations

Displaying 28 items

View Taxonomy