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rifcsphigho2_01_scaffold_12022

Search features with annotation key words

Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsphigho2_01_scaffold_12022_1
unknown

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comp(1..429)
-----------------
DNA (429bp)
protein (143aa)

This feature has no annotations

rifcsphigho2_01_scaffold_12022_2

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544..990
-----------------
DNA (447bp)
protein (149aa)
50S ribosomal protein L15e n=1 Tax=Methanocella conradii (strain DSM 24694 / JCM 17849 / CGMCC 1.5162 / HZ254) RepID=H8IA53_METCZ
Large subunit ribosomal protein L15e {ECO:0000313|EMBL:KHO55699.1}; TaxID=1579379 species="Archaea.;" source="archaeon GW2011_AR21.;"
rpl15e; 50S Ribosomal protein L15E
rifcsphigho2_01_scaffold_12022_3

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comp(994..1338)
-----------------
DNA (345bp)
protein (115aa)
Uncharacterized protein {ECO:0000313|EMBL:KHO55698.1}; TaxID=1579379 species="Archaea.;" source="archaeon GW2011_AR21.;"
rifcsphigho2_01_scaffold_12022_4
unknown

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comp(1445..1615)
-----------------
DNA (171bp)
protein (57aa)

This feature has no annotations

rifcsphigho2_01_scaffold_12022_5
unknown

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1749..2369
-----------------
DNA (621bp)
protein (207aa)

This feature has no annotations

rifcsphigho2_01_scaffold_12022_6

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2366..2995
-----------------
DNA (630bp)
protein (210aa)
Ribonuclease P protein component 3 {ECO:0000256|HAMAP-Rule:MF_00756}; Short=RNase P component 3 {ECO:0000256|HAMAP-Rule:MF_00756};; EC=3.1.26.5 {ECO:0000256|HAMAP-Rule:MF_00756};; Rpp30 {ECO:0000256|H
Ribonuclease P protein component 3
Ribonuclease P protein component 3 id=5241837 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
rifcsphigho2_01_scaffold_12022_7

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2992..3543
-----------------
DNA (552bp)
protein (184aa)
Putative HD domain protein n=1 Tax=uncultured marine crenarchaeote HF4000_APKG2O16 RepID=B3T6Y7_9ARCH
Metal dependent phosphohydrolase {ECO:0000313|EMBL:AIF11993.1}; TaxID=1456189 species="Archaea; Thaumarchaeota; environmental samples.;" source="uncultured marine thaumarchaeote KM3_54_B03.;"
metal dependent phosphohydrolase
rifcsphigho2_01_scaffold_12022_8

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3524..4567
-----------------
DNA (1044bp)
protein (348aa)
Predicted Fe-S center containing protein n=1 Tax=Methanosphaera stadtmanae (strain ATCC 43021 / DSM 3091 / JCM 11832 / MCB-3) RepID=Q2NHM3_METST
Marine sediment metagenome DNA, contig: S01H4_C00166 {ECO:0000313|EMBL:GAG66363.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagen
Fe-S center containing protein
rifcsphigho2_01_scaffold_12022_9
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

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4568..4879
-----------------
DNA (312bp)
protein (104aa)
hypothetical protein Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
rifcsphigho2_01_scaffold_12022_10

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4985..5527
-----------------
DNA (543bp)
protein (181aa)
metal dependent phosphohydrolase
Metal dependent phosphohydrolase {ECO:0000313|EMBL:AJF60829.1}; TaxID=1579370 species="Archaea.;" source="archaeon GW2011_AR10.;"
metal dependent phosphohydrolase id=5241838 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
rifcsphigho2_01_scaffold_12022_11
RBG_13_Bathyarchaeota_38_9_curated, Bathyarchaeota, Archaea

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5531..6445
-----------------
DNA (915bp)
protein (305aa)
hypothetical protein Tax=RBG_13_Bathyarchaeota_38_9_curated
Integral membrane protein DUF6 id=1828195 bin=GWE2_CPR3_35_7 species=ACD48 genus=ACD48 taxon_order=ACD48 taxon_class=ACD48 phylum=OP11 tax=GWE2_CPR3_35_7 organism_group=CPR3 organism_desc=Good
rifcsphigho2_01_scaffold_12022_12

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6707..7078
-----------------
DNA (372bp)
protein (124aa)
Ribonuclease P protein component 2 {ECO:0000256|HAMAP-Rule:MF_00755}; Short=RNase P component 2 {ECO:0000256|HAMAP-Rule:MF_00755};; EC=3.1.26.5 {ECO:0000256|HAMAP-Rule:MF_00755};; Pop5 {ECO:0000256|HA
ribonuclease P/MRP protein subunit POP5 (EC:3.1.26.5)
ribonuclease P protein component 2; K03537 ribonuclease P/MRP protein subunit POP5 [EC:3.1.26.5] id=5241839 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
rifcsphigho2_01_scaffold_12022_13
unknown

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comp(7090..7653)
-----------------
DNA (564bp)
protein (188aa)

This feature has no annotations

rifcsphigho2_01_scaffold_12022_14
RBG_13_RIF_OD1_07_37_56_curated, RIF-OD1-7, Parcubacteria, Bacteria

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comp(7685..8431)
-----------------
DNA (747bp)
protein (249aa)
ABC transporter permease; K09686 antibiotic transport system permease protein Tax=RBG_13_RIF_OD1_07_37_56_curated
ABC transporter permease; K09686 antibiotic transport system permease protein id=5048655 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
multidrug ABC transporter, permease protein
rifcsphigho2_01_scaffold_12022_15
AR4, Woesearchaeaota, DPANN, Archaea

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comp(8435..9247)
-----------------
DNA (813bp)
protein (271aa)
ABC transporter-like protein; K09687 antibiotic transport system ATP-binding protein id=5041614 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
ABC transporter-like protein; K09687 antibiotic transport system ATP-binding protein Tax=AR4
ABC transporter-like protein
rifcsphigho2_01_scaffold_12022_16
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

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9301..9915
-----------------
DNA (615bp)
protein (205aa)
hypothetical protein Tax=RBG_16_Euryarchaeota_41_19_curated
hypothetical protein id=5084327 bin=GWA2_OP11_43_14 species=GWA2_OP11 genus=GWA2_OP11 taxon_order=GWA2_OP11 taxon_class=GWA2_OP11 phylum=OP11 tax=GWA2_OP11_43_14 organism_group=OP11 (Microgenomates) organism_desc=GWA2_OP11_2
hypothetical protein
rifcsphigho2_01_scaffold_12022_17

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10001..10732
-----------------
DNA (732bp)
protein (244aa)
Proteasome alpha subunit {ECO:0000313|EMBL:KHO55693.1}; EC=3.4.25.1 {ECO:0000313|EMBL:KHO55693.1};; TaxID=1579379 species="Archaea.;" source="archaeon GW2011_AR21.;"
psmA; proteasome alpha subunit (EC:3.4.25.1)
psmA; proteasome, subunit alpha (EC:3.4.25.1); K03432 proteasome alpha subunit [EC:3.4.25.1] id=5241841 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
rifcsphigho2_01_scaffold_12022_18

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10766..11488
-----------------
DNA (723bp)
protein (241aa)
Ribosome maturation protein SDO1 {ECO:0000313|EMBL:KHO55692.1}; TaxID=1579379 species="Archaea.;" source="archaeon GW2011_AR21.;"
ribosome maturation protein SDO1
ribosome maturation protein SBDS-like protein; K14574 ribosome maturation protein SDO1 id=5241842 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
rifcsphigho2_01_scaffold_12022_19

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11561..12277
-----------------
DNA (717bp)
protein (239aa)
Exosome complex component RRP4 {ECO:0000313|EMBL:KHO55691.1}; TaxID=1579379 species="Archaea.;" source="archaeon GW2011_AR21.;"
exosome complex RNA-binding protein Rrp4
exosome complex RNA-binding protein Rrp4 id=5241843 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
rifcsphigho2_01_scaffold_12022_20
AR10, Diapherotrites, DPANN, Archaea

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12274..13020
-----------------
DNA (747bp)
protein (249aa)
exosome complex component RRP41
exosome complex exonuclease Rrp41; K11600 exosome complex component RRP41 id=5241844 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
exosome complex exonuclease Rrp41; K11600 exosome complex component RRP41 Tax=AR10
rifcsphigho2_01_scaffold_12022_21

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13017..13796
-----------------
DNA (780bp)
protein (260aa)
Exosome complex component RRP42 {ECO:0000313|EMBL:KHO55689.1}; TaxID=1579379 species="Archaea.;" source="archaeon GW2011_AR21.;"
exosome complex component RRP42
exosome complex RNA-binding protein Rrp42; K12589 exosome complex component RRP42 id=5241845 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
rifcsphigho2_01_scaffold_12022_22
unknown

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13808..13900
-----------------
DNA (93bp)
protein (31aa)

This feature has no annotations

Displaying 22 items

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