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RIFCSPHIGHO2_01_FULL_Archaea_Pacearchaeota_29_23

RIFCSPHIGHO2_01_FULL_Archaea_29_23
In projects: RIFCSPHIGHO2_01_FULL  |  archaea-rifleo2  |  DPANN  |  archaea_ggkbase

Consensus taxonomy: Archaea

Taxonomy override: Pacearchaeota

Description

Pacearchaeota (DPANN)

Displaying 39 items
contig # features sequence size GC content (%) Cov Coding Density (%)
rifcsphigho2_01_scaffold_4737
Phylum: Pacearchaeota (53.45%)
57 42893 bp 28.60 22.84 84.81
rifcsphigho2_01_scaffold_12348
Phylum: Pacearchaeota (53.57%)
56 47866 bp 29.96 21.96 89.79
rifcsphigho2_01_scaffold_6473
Species: CG_Pacearch_05 (78%)
49 35837 bp 28.66 22.46 90.92
rifcsphigho2_01_scaffold_7359
Species: CG_Pacearch_05 (55.1%)
48 35477 bp 28.67 22.69 94.28
rifcsphigho2_01_scaffold_2520
Domain: Archaea (65.96%)
47 32226 bp 27.59 23.03 92.74
rifcsphigho2_01_scaffold_2479
Domain: Archaea (55.81%)
42 32580 bp 28.81 20.74 89.99
rifcsphigho2_01_scaffold_17005
Domain: Archaea (62.86%)
35 23825 bp 28.55 21.26 89.14
rifcsphigho2_01_scaffold_8581
Domain: Archaea (51.43%)
35 16642 bp 29.20 21.56 87.14
rifcsphigho2_01_scaffold_37840
Domain: Archaea (65.63%)
31 26562 bp 29.40 22.14 91.50
rifcsphigho2_01_scaffold_7350
Domain: Archaea (63.33%)
30 20424 bp 28.53 22.28 89.17
rifcsphigho2_01_scaffold_8228
Species: CG_Pacearch_05 (55.17%)
29 22951 bp 28.79 22.72 87.80
rifcsphigho2_01_scaffold_15009
Domain: Archaea (72.41%)
28 19649 bp 28.53 21.73 81.90
rifcsphigho2_01_scaffold_6836
Domain: Archaea (60.71%)
28 23555 bp 29.24 22.04 90.29
rifcsphigho2_01_scaffold_20654
Domain: Archaea (50%)
27 20020 bp 29.42 22.58 85.95
rifcsphigho2_01_scaffold_7739
Domain: Archaea (53.85%)
26 21107 bp 29.65 22.84 89.83
rifcsphigho2_01_scaffold_8944
Species: CG_Pacearch_05 (56%)
25 15384 bp 28.06 22.69 94.58
rifcsphigho2_01_scaffold_39725
Species: CG_Pacearch_05 (78.26%)
23 10206 bp 29.33 23.04 90.95
rifcsphigho2_01_scaffold_14401
Domain: Archaea (68%)
23 12861 bp 27.98 28.31 89.20
rifcsphigho2_01_scaffold_14083
Domain: Archaea (50%)
22 12398 bp 28.16 23.43 87.50
rifcsphigho2_01_scaffold_27278 20 12966 bp 29.62 21.57 86.30
rifcsphigho2_01_scaffold_15736
Phylum: Pacearchaeota (50%)
19 13557 bp 29.20 22.83 86.46
rifcsphigho2_01_scaffold_51128 18 10377 bp 28.31 22.44 86.87
rifcsphigho2_01_scaffold_32583
Domain: Archaea (58.82%)
17 13514 bp 29.32 23.02 90.24
rifcsphigho2_01_scaffold_14165
Domain: Bacteria (56.25%)
16 12973 bp 27.84 22.53 93.26
rifcsphigho2_01_scaffold_68900
Domain: Archaea (66.67%)
15 9513 bp 28.27 22.24 85.21
rifcsphigho2_01_scaffold_41009
Domain: Archaea (60%)
15 6432 bp 28.58 22.75 93.66
rifcsphigho2_01_scaffold_13330
Species: CG_Pacearch_05 (68.75%)
15 12096 bp 28.44 27.39 94.00
rifcsphigho2_01_scaffold_36829
Domain: Archaea (60%)
15 9900 bp 28.82 20.30 85.67
rifcsphigho2_01_scaffold_25769
Domain: Archaea (61.54%)
13 10001 bp 27.35 25.86 90.80
rifcsphigho2_01_scaffold_22418
Domain: Bacteria (61.54%)
13 9327 bp 29.23 23.28 87.23
rifcsphigho2_01_scaffold_21905
Phylum: Pacearchaeota (50%)
12 12454 bp 29.55 20.49 88.00
rifcsphigho2_01_scaffold_12176
Domain: Archaea (75%)
12 12760 bp 28.85 22.57 90.75
rifcsphigho2_01_scaffold_28432
Species: CG_Pacearch_05 (90.91%)
11 7611 bp 28.81 24.03 92.83
rifcsphigho2_01_scaffold_34258
Domain: Archaea (50%)
10 7724 bp 28.35 19.20 82.30
rifcsphigho2_01_scaffold_63550
Species: CG_Pacearch_05 (66.67%)
9 5344 bp 30.76 19.02 93.69
rifcsphigho2_01_scaffold_39770 9 6130 bp 29.04 23.45 90.20
rifcsphigho2_01_scaffold_40895
Phylum: Pacearchaeota (66.67%)
6 6023 bp 28.86 27.65 87.81
rifcsphigho2_01_scaffold_47322
Species: CG_Pacearch_05 (50%)
6 5473 bp 28.39 21.93 92.25
rifcsphigho2_01_scaffold_37018
Species: CG_Pacearch_05 (50%)
4 6786 bp 31.46 22.65 96.60
Displaying 39 items

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.