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rifcsphigho2_02_scaffold_3994

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Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsphigho2_02_scaffold_3994_1
unknown

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513..1019
-----------------
DNA (507bp)
protein (169aa)

This feature has no annotations

rifcsphigho2_02_scaffold_3994_2
AR5, Aenigmarchaeota, DPANN, Archaea

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comp(1338..2366)
-----------------
DNA (1029bp)
protein (343aa)
mevalonate kinase (EC:2.7.1.36); K00869 mevalonate kinase [EC:2.7.1.36] id=18248758 bin=AR5_curated_draft species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=AR5_curated_draft organism_group=Archaeon organism_desc=Curated draft
mevalonate kinase (EC:2.7.1.36); K00869 mevalonate kinase [EC:2.7.1.36] Tax=AR5
mevalonate kinase
rifcsphigho2_02_scaffold_3994_3

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comp(2498..3547)
-----------------
DNA (1050bp)
protein (350aa)
diphosphomevalonate decarboxylase (EC:4.1.1.33)
mevalonate diphosphate decarboxylase; K01597 diphosphomevalonate decarboxylase [EC:4.1.1.33] id=5241527 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
Diphosphomevalonate decarboxylase {ECO:0000313|EMBL:AJF60518.1}; EC=4.1.1.33 {ECO:0000313|EMBL:AJF60518.1};; TaxID=1579370 species="Archaea.;" source="archaeon GW2011_AR10.;"
rifcsphigho2_02_scaffold_3994_4
unknown

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comp(3627..4721)
-----------------
DNA (1095bp)
protein (365aa)

This feature has no annotations

rifcsphigho2_02_scaffold_3994_5
GWA2_OP11_nov_42_16, Gottesmanbacteria, Microgenomates, Bacteria

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comp(4718..5761)
-----------------
DNA (1044bp)
protein (348aa)
Uncharacterized protein {ECO:0000313|EMBL:KKS41951.1}; TaxID=1618441 species="Bacteria; Microgenomates.;" source="Microgenomates (Gottesmanbacteria) bacterium GW2011_GWA2_42_16.;"
rifcsphigho2_02_scaffold_3994_6
AR5, Aenigmarchaeota, DPANN, Archaea

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5822..6925
-----------------
DNA (1104bp)
protein (368aa)
phosphomevalonate kinase; K00938 phosphomevalonate kinase [EC:2.7.4.2] id=5040485 bin=GW2011_AR5 species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=GW2011_AR5 organism_group=Archaea organism_desc=gwa2_.48_18 Replace with curated version!
phosphomevalonate kinase; K00938 phosphomevalonate kinase [EC:2.7.4.2] Tax=AR5
phosphomevalonate kinase (EC:2.7.4.2)
rifcsphigho2_02_scaffold_3994_7

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comp(7013..8188)
-----------------
DNA (1176bp)
protein (392aa)
tyrosyl-tRNA synthetase (EC:6.1.1.1)
hypothetical protein n=1 Tax=unclassified candidate division pSL4 RepID=UPI00035EE0FF
Marine sediment metagenome DNA, contig: S03H2_L00566 {ECO:0000313|EMBL:GAH39149.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagen
rifcsphigho2_02_scaffold_3994_8
AR5, Aenigmarchaeota, DPANN, Archaea

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comp(8213..8611)
-----------------
DNA (399bp)
protein (133aa)
hypothetical protein id=18248890 bin=AR5_curated_draft species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=AR5_curated_draft organism_group=Archaeon organism_desc=Curated draft
hypothetical protein Tax=AR5
hypothetical protein
rifcsphigho2_02_scaffold_3994_9

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8704..9234
-----------------
DNA (531bp)
protein (177aa)
transcription factor; K03120 transcription initiation factor TFIID TATA-box-binding protein id=5040616 bin=GW2011_AR5 species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=GW2011_AR5 organism_group=Archaea organism_desc=gwa2_.48_18 Replace with curated version!
TATA-box-binding protein {ECO:0000256|HAMAP-Rule:MF_00408, ECO:0000256|RuleBase:RU000523}; Box A-binding protein {ECO:0000256|HAMAP-Rule:MF_00408}; TATA sequence-binding protein {ECO:0000256|HAMAP-Rul
TATA binding protein of transcription factor TFIID
rifcsphigho2_02_scaffold_3994_10
unknown

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9284..9823
-----------------
DNA (540bp)
protein (180aa)

This feature has no annotations

rifcsphigho2_02_scaffold_3994_11
unknown

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comp(9975..10127)
-----------------
DNA (153bp)
protein (51aa)

This feature has no annotations

rifcsphigho2_02_scaffold_3994_12
Pedobacter sp. NL19, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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10331..11356
-----------------
DNA (1026bp)
protein (342aa)
prephenate dehydrogenase (NADP(+)) (EC:1.3.1.13)
NADP oxidoreductase coenzyme F420-dependent n=1 Tax=Mucilaginibacter paludis DSM 18603 RepID=H1YFB3_9SPHI
Contig65, whole genome shotgun sequence {ECO:0000313|EMBL:KIO76388.1}; TaxID=1503925 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="
rifcsphigho2_02_scaffold_3994_13
unknown

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11361..11480
-----------------
DNA (120bp)
protein (40aa)

This feature has no annotations

rifcsphigho2_02_scaffold_3994_14
unknown

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comp(11600..12523)
-----------------
DNA (924bp)
protein (308aa)

This feature has no annotations

rifcsphigho2_02_scaffold_3994_15
CG_Aenigma_01, Aenigmaarchaeota, Archaea

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comp(12656..13540)
-----------------
DNA (885bp)
protein (295aa)
Putative ribosomal protein S6 modification protein n=1 Tax=Bacteriovorax marinus (strain ATCC BAA-682 / DSM 15412 / SJ) RepID=E1X4Y3_BACMS
RimK family alpha-L-glutamate ligase; K05844 ribosomal protein S6 modification protein Tax=CG_Aenigma_01
putative ribosomal protein S6 modification protein
rifcsphigho2_02_scaffold_3994_16
Halorubrum coriense, Halorubrum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

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comp(13569..14270)
-----------------
DNA (702bp)
protein (234aa)
RimK domain protein ATP-grasp n=1 Tax=Halorubrum coriense DSM 10284 RepID=M0EBG6_9EURY
RimK domain protein ATP-grasp {ECO:0000313|EMBL:ELZ44222.1}; TaxID=1227466 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Halorubrum.;" source="Halorubrum coriense DSM 1
alpha-L-glutamate ligase
rifcsphigho2_02_scaffold_3994_17
Methanococcoides methylutens, Methanococcoides, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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14321..15493
-----------------
DNA (1173bp)
protein (391aa)
Cold-shock DEAD-box protein A {ECO:0000313|EMBL:AKB84226.1}; TaxID=1434104 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanococcoides.;" source="Methanoc
DEAD/DEAH box helicase-like protein
Probable ATP-dependent RNA helicase id=5799626 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
rifcsphigho2_02_scaffold_3994_18
unknown

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comp(15599..15841)
-----------------
DNA (243bp)
protein (81aa)

This feature has no annotations

rifcsphigho2_02_scaffold_3994_19
GWF1_OP11_38_23, Shapirobacteria, Microgenomates, Bacteria

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comp(15849..17198)
-----------------
DNA (1350bp)
protein (450aa)
Uncharacterized protein {ECO:0000313|EMBL:KKQ65256.1}; TaxID=1618491 species="Bacteria; Microgenomates.;" source="Microgenomates (Shapirobacteria) bacterium GW2011_GWF1_38_23.;"
rifcsphigho2_02_scaffold_3994_20
unknown

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comp(17195..18226)
-----------------
DNA (1032bp)
protein (344aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI00036472CC
rifcsphigho2_02_scaffold_3994_21

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comp(18267..20066)
-----------------
DNA (1800bp)
protein (600aa)
aspartyl-tRNA(Asn) amidotransferase subunit beta; K03330 glutamyl-tRNA(Gln) amidotransferase subunit E [EC:6.3.5.7] id=18248882 bin=AR5_curated_draft species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=AR5_curated_draft organism_group=Archaeon organism_desc=Curated draft
Glutamyl-tRNA(Gln) amidotransferase subunit E {ECO:0000256|HAMAP-Rule:MF_00588}; Short=Glu-ADT subunit E {ECO:0000256|HAMAP-Rule:MF_00588};; EC=6.3.5.- {ECO:0000256|HAMAP-Rule:MF_00588};; TaxID=157936
glutamyl-tRNA(Gln) amidotransferase subunit E
rifcsphigho2_02_scaffold_3994_22
unknown

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comp(20110..20508)
-----------------
DNA (399bp)
protein (133aa)

This feature has no annotations

rifcsphigho2_02_scaffold_3994_23
unknown

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comp(20585..20911)
-----------------
DNA (327bp)
protein (109aa)

This feature has no annotations

Displaying 23 items

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