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rifcsphigho2_02_scaffold_8292

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Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsphigho2_02_scaffold_8292_1

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comp(1..2718)
-----------------
DNA (2718bp)
protein (906aa)
Uncharacterized protein {ECO:0000313|EMBL:KKN35396.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
hypothetical protein id=5046333 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
rifcsphigho2_02_scaffold_8292_2
AR5, Aenigmarchaeota, DPANN, Archaea

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2822..3247
-----------------
DNA (426bp)
protein (142aa)
Archaeal flagellin, N-terminal Tax=AR5
Archaeal flagellin, N-terminal id=18248158 bin=AR5_curated_draft species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=AR5_curated_draft organism_group=Archaeon organism_desc=Curated draft
rifcsphigho2_02_scaffold_8292_3
unknown

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comp(3220..3510)
-----------------
DNA (291bp)
protein (97aa)

This feature has no annotations

rifcsphigho2_02_scaffold_8292_4
unknown

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comp(3485..3727)
-----------------
DNA (243bp)
protein (81aa)

This feature has no annotations

rifcsphigho2_02_scaffold_8292_5
CG_Micra_04, Micraarchaeota, Archaea

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4238..5296
-----------------
DNA (1059bp)
protein (353aa)
geranylgeranyl diphosphate synthase, type I (EC:2.5.1.1)
polyprenyl synthetase; K13787 geranylgeranyl diphosphate synthase, type I [EC:2.5.1.1 2.5.1.10 2.5.1.29] id=5241589 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
geranylgeranyl pyrophosphate synthase Tax=CG_Micra_04
rifcsphigho2_02_scaffold_8292_6

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5280..5996
-----------------
DNA (717bp)
protein (239aa)
Ribonuclease {ECO:0000256|RuleBase:RU003515}; EC=3.1.26.- {ECO:0000256|RuleBase:RU003515};; TaxID=1579367 species="Archaea.;" source="archaeon GW2011_AR5.;"
ribonuclease HII id=18248232 bin=AR5_curated_draft species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=AR5_curated_draft organism_group=Archaeon organism_desc=Curated draft
ribonuclease HII
rifcsphigho2_02_scaffold_8292_7
Rhodothermus marinus, Rhodothermus, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

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6561..7001
-----------------
DNA (441bp)
protein (147aa)
Methyltransferase {ECO:0000256|RuleBase:RU362026}; EC=2.1.1.- {ECO:0000256|RuleBase:RU362026};; TaxID=762570 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae;
DNA methylase N-4/N-6 domain protein n=1 Tax=Rhodothermus marinus SG0.5JP17-172 RepID=G2SIF1_RHOMR
DNA methylase N-4/N-6 domain-containing protein
rifcsphigho2_02_scaffold_8292_8
Rhodothermus marinus, Rhodothermus, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

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7007..7633
-----------------
DNA (627bp)
protein (209aa)
Methyltransferase {ECO:0000256|RuleBase:RU362026}; EC=2.1.1.- {ECO:0000256|RuleBase:RU362026};; TaxID=762570 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae;
DNA methylase N-4/N-6 domain protein n=1 Tax=Rhodothermus marinus SG0.5JP17-172 RepID=G2SIF1_RHOMR
DNA methylase N-4/N-6 domain-containing protein
rifcsphigho2_02_scaffold_8292_9

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7626..7757
-----------------
DNA (132bp)
protein (44aa)
Cytoplasmic protein (Fragment) n=1 Tax=mine drainage metagenome RepID=T1BD45_9ZZZZ
Cytoplasmic protein {ECO:0000313|EMBL:EQD67767.1}; Flags: Fragment;; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
hypothetical protein
rifcsphigho2_02_scaffold_8292_10
RLO_RIF_OD1_13_41_11, RIF-OD1-13, Parcubacteria, Bacteria

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7770..8111
-----------------
DNA (342bp)
protein (114aa)
Uncharacterized protein (Fragment) n=1 Tax=mine drainage metagenome RepID=T0ZNI8_9ZZZZ
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_RIF_OD1_13_41_11_curated
hypothetical protein
rifcsphigho2_02_scaffold_8292_11
unknown

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comp(8243..8578)
-----------------
DNA (336bp)
protein (112aa)

This feature has no annotations

rifcsphigho2_02_scaffold_8292_12
RBG_13_Pacearchaeota_33_26_curated, Pacearchaeota, DPANN, Archaea

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8617..9738
-----------------
DNA (1122bp)
protein (374aa)
2,3-bisphosphoglycerate-independent phosphoglycerate mutase (EC:5.4.2.1); K15635 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.1] Tax=RBG_13_Pacearchaeota_33_26_curated
Probable 2,3-bisphosphoglycerate-independent phosphoglycerate mutase n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q1J1_9BACT
phosphoglycerate mutase
rifcsphigho2_02_scaffold_8292_13
AR5, Aenigmarchaeota, DPANN, Archaea

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9739..10326
-----------------
DNA (588bp)
protein (196aa)
peptidase M50 family id=18248163 bin=AR5_curated_draft species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=AR5_curated_draft organism_group=Archaeon organism_desc=Curated draft
peptidase M50 family Tax=AR5
peptidase M50
rifcsphigho2_02_scaffold_8292_14
AR5, Aenigmarchaeota, DPANN, Archaea

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comp(10925..11401)
-----------------
DNA (477bp)
protein (159aa)
seg id=18248752 bin=AR5_curated_draft species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=AR5_curated_draft organism_group=Archaeon organism_desc=Curated draft
seg Tax=AR5
rifcsphigho2_02_scaffold_8292_15
Methanothermus fervidus, Methanothermus, Methanobacteriales, Methanobacteria, Euryarchaeota, Archaea

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11453..12499
-----------------
DNA (1047bp)
protein (349aa)
isopentenyl-diphosphate delta-isomerase (EC:5.3.3.2)
Isopentenyl-diphosphate delta-isomerase {ECO:0000256|HAMAP-Rule:MF_00354}; Short=IPP isomerase {ECO:0000256|HAMAP-Rule:MF_00354};; EC=5.3.3.2 {ECO:0000256|HAMAP-Rule:MF_00354};; Isopentenyl diphosphat
Isopentenyl-diphosphate delta-isomerase n=1 Tax=Methanothermus fervidus (strain ATCC 43054 / DSM 2088 / JCM 10308 / V24 S) RepID=E3GZG3_METFV
rifcsphigho2_02_scaffold_8292_16
Anaerococcus prevotii, Anaerococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(12549..13307)
-----------------
DNA (759bp)
protein (253aa)
DNA-directed RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Short=RNAP subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00059};; RNA polymerase
DNA-directed RNA polymerase subunit alpha n=1 Tax=Anaerococcus prevotii (strain ATCC 9321 / DSM 20548 / JCM 6508 / PC1) RepID=C7REF5_ANAPD
DNA-directed RNA polymerase subunit alpha
rifcsphigho2_02_scaffold_8292_17
Acetonema longum, Acetonema, Selenomonadales, Negativicutes, Firmicutes, Bacteria

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comp(13310..14401)
-----------------
DNA (1092bp)
protein (364aa)
DNA-directed RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Short=RNAP subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00059};; RNA polymerase
DNA-directed RNA polymerase subunit alpha n=1 Tax=Acetonema longum DSM 6540 RepID=F7NF69_9FIRM
rpoA; DNA-directed RNA polymerase alpha subunit
rifcsphigho2_02_scaffold_8292_18
unknown

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comp(14432..16039)
-----------------
DNA (1608bp)
protein (536aa)

This feature has no annotations

rifcsphigho2_02_scaffold_8292_19

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16091..16915
-----------------
DNA (825bp)
protein (275aa)
Endonuclease IV (EC:3.1.21.2); K01151 deoxyribonuclease IV [EC:3.1.21.2] id=5050433 bin=GW2011_AR5 species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=GW2011_AR5 organism_group=Archaea organism_desc=gwa2_.48_18 Replace with curated version!
Deoxyribonuclease IV {ECO:0000313|EMBL:KHO47358.1}; EC=3.1.21.2 {ECO:0000313|EMBL:KHO47358.1};; TaxID=1579367 species="Archaea.;" source="archaeon GW2011_AR5.;"
deoxyribonuclease IV (EC:3.1.21.2)
rifcsphigho2_02_scaffold_8292_20
unknown

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comp(16934..17215)
-----------------
DNA (282bp)
protein (94aa)

This feature has no annotations

rifcsphigho2_02_scaffold_8292_21
Waddlia chondrophila, Waddlia, Chlamydiales, Chlamydiia, Chlamydiae, Bacteria

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17294..18754
-----------------
DNA (1461bp)
protein (487aa)
pepA; Leucyl aminopeptidase (EC:3.4.11.1)
Probable cytosol aminopeptidase n=2 Tax=Waddlia chondrophila RepID=D6YW21_WADCW
Probable cytosol aminopeptidase {ECO:0000256|HAMAP-Rule:MF_00181}; Leucine aminopeptidase {ECO:0000256|HAMAP-Rule:MF_00181}; Leucyl aminopeptidase {ECO:0000256|HAMAP-Rule:MF_00181}; TaxID=765953 speci
rifcsphigho2_02_scaffold_8292_22
GWA1_OD1_36_12, Parcubacteria, Bacteria

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18850..20559
-----------------
DNA (1710bp)
protein (570aa)
Endonuclease nuclease-like protein n=1 Tax=Haladaptatus paucihalophilus DX253 RepID=E7QML3_9EURY
Nuclease (SNase domain protein) {ECO:0000313|EMBL:KKP91742.1}; TaxID=1618782 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA1_36_12.;"
nuc; endonuclease
rifcsphigho2_02_scaffold_8292_23
CG_Pacearch_03, Pacearchaeota, Archaea

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comp(20734..21660)
-----------------
DNA (927bp)
protein (309aa)
Transposase IS4 family protein n=1 Tax=Ferroplasma sp. Type II RepID=T0MCL8_9EURY
transposase IS4 family protein Tax=CG_Pacearch_03
transposase IS4 family protein
rifcsphigho2_02_scaffold_8292_24
CG_Pacearch_03, Pacearchaeota, Archaea

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comp(21602..22318)
-----------------
DNA (717bp)
protein (239aa)
Transposase IS4 family protein n=1 Tax=Desulfotomaculum kuznetsovii (strain DSM 6115 / VKM B-1805 / 17) RepID=F6CH72_DESK7
transposase IS4 family protein Tax=CG_Pacearch_03
transposase IS4 family protein
Displaying 24 items

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