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rifcsphigho2_02_scaffold_1413

Search features with annotation key words

Displaying items 1-30 of 42 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs functional annotations notes
rifcsphigho2_02_scaffold_1413_1
Caldanaerobacter subterraneus, Caldanaerobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3..884)
-----------------
DNA (882bp)
protein (294aa)
GcvP; glycine dehydrogenase subunit 2 (EC:1.4.4.2)
Probable glycine dehydrogenase (decarboxylating) subunit 2 n=1 Tax=Caldanaerobacter subterraneus subsp. yonseiensis KB-1 RepID=U5CHY7_THEYO
rifcsphigho2_02_scaffold_1413_2
BJP_08E140C01_Syntrophobacterales_43_19, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(881..2218)
-----------------
DNA (1338bp)
protein (446aa)
hypothetical protein n=1 Tax=Caldibacillus debilis RepID=UPI00035CBB85
glycine dehydrogenase subunit 1
rifcsphigho2_02_scaffold_1413_3
Caldithrix abyssi, Caldithrix, Bacteria

Not on your lists

comp(2221..2601)
-----------------
DNA (381bp)
protein (127aa)
Glycine cleavage system H protein n=1 Tax=Caldithrix abyssi DSM 13497 RepID=H1XV11_9BACT
gcvH; glycine cleavage system H protein
rifcsphigho2_02_scaffold_1413_4
Desulfotomaculum reducens, Desulfotomaculum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2598..3767)
-----------------
DNA (1170bp)
protein (390aa)
glycine cleavage system T protein (EC:2.1.2.10)
Aminomethyltransferase n=1 Tax=Desulfotomaculum reducens (strain MI-1) RepID=GCST_DESRM
rifcsphigho2_02_scaffold_1413_5
Persephonella marina, Persephonella, Aquificales, Aquificae, Aquificae, Bacteria

Not on your lists

4004..5671
-----------------
DNA (1668bp)
protein (556aa)
60 kDa chaperonin n=1 Tax=Persephonella marina (strain DSM 14350 / EX-H1) RepID=C0QSY2_PERMH
groEL; chaperonin GroEL
rifcsphigho2_02_scaffold_1413_6
unknown

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5834..6199
-----------------
DNA (366bp)
protein (122aa)

This feature has no annotations

rifcsphigho2_02_scaffold_1413_7

Not on your lists

6389..6733
-----------------
DNA (345bp)
protein (115aa)
Ribonuclease P protein component 2 id=5046930 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
RNase P/RNase MRP subunit POP5
rifcsphigho2_02_scaffold_1413_8

Not on your lists

6736..7539
-----------------
DNA (804bp)
protein (268aa)
psmA; proteasome subunit alpha (EC:3.4.25.1); K03432 proteasome alpha subunit [EC:3.4.25.1] id=5046929 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Proteasome subunit alpha
rifcsphigho2_02_scaffold_1413_9
CG_Woesearch_02, Woesearchaeota, Archaea

Not on your lists


7545..8267
-----------------
DNA (723bp)
protein (241aa)
ASCG--Ribosome--maturation--protein--SDO1--homolog
RNA-associated protein; K14574 ribosome maturation protein SDO1 id=5046928 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
RNA-associated protein
rifcsphigho2_02_scaffold_1413_10

Not on your lists

8273..9223
-----------------
DNA (951bp)
protein (317aa)
rpr43; exosome RNA binding protein (EC:3.1.13.-); K03679 exosome complex component RRP4 id=5046927 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
putative exosome complex RNA-binding protein 1
rifcsphigho2_02_scaffold_1413_11
GWA2_OP11_46_7, Microgenomates, Bacteria

Not on your lists

9220..9930
-----------------
DNA (711bp)
protein (237aa)
Rph; exosome complex exonuclease Rrp41; K11600 exosome complex component RRP41 id=5046926 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
exosome complex exonuclease Rrp41
rifcsphigho2_02_scaffold_1413_12
AR11, Woesearchaeaota, DPANN, Archaea

Not on your lists

9923..10702
-----------------
DNA (780bp)
protein (260aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI00036E0285
exosome complex RNA-binding protein Rrp42
rifcsphigho2_02_scaffold_1413_13
RBG_13_Woesearchaeota_36_6_curated, Woesearchaeota, DPANN, Archaea

Not on your lists

comp(10852..11253)
-----------------
DNA (402bp)
protein (134aa)
rifcsphigho2_02_scaffold_1413_14
CG_Woesearch_01, Woesearchaeota, Archaea

Not on your lists

comp(11384..11902)
-----------------
DNA (519bp)
protein (173aa)
Transcription factor E id=5800744 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
Transcription factor E
rifcsphigho2_02_scaffold_1413_15
RBG_13_Woesearchaeota_36_6_curated, Woesearchaeota, DPANN, Archaea

Not on your lists

12099..13334
-----------------
DNA (1236bp)
protein (412aa)
Two-component sensor histidine kinase n=1 Tax=Brevibacillus borstelensis AK1 RepID=M8DI89_9BACL
multi-sensor signal transduction histidine kinase
rifcsphigho2_02_scaffold_1413_16
Nitrincola sp. A-D6, Nitrincola, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13306..13674)
-----------------
DNA (369bp)
protein (123aa)
chemotaxis protein CheY n=1 Tax=Halomonas sp. KM-1 RepID=UPI0002890618
yycF; response regulator receiver protein
rifcsphigho2_02_scaffold_1413_17
RBG_13_Woesearchaeota_36_6_curated, Woesearchaeota, DPANN, Archaea

Not on your lists

comp(13825..14526)
-----------------
DNA (702bp)
protein (234aa)
hypothetical protein
hypothetical protein id=5241590 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
rifcsphigho2_02_scaffold_1413_18
RBG_13_Pacearchaeota_36_9_curated, Pacearchaeota, DPANN, Archaea

Not on your lists

comp(14523..14891)
-----------------
DNA (369bp)
protein (123aa)
rifcsphigho2_02_scaffold_1413_19
Methanopyrus kandleri, Methanopyrus, Methanopyrales, Methanopyri, Euryarchaeota, Archaea

Not on your lists

15078..16352
-----------------
DNA (1275bp)
protein (425aa)
(R)-citramalate synthase (EC:2.3.3.13)
Probable 2-isopropylmalate synthase n=1 Tax=Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938) RepID=LEU1_METKA
rifcsphigho2_02_scaffold_1413_20
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

Not on your lists

16349..17602
-----------------
DNA (1254bp)
protein (418aa)
3-isopropylmalate dehydratase large subunit 1 n=1 Tax=Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938) RepID=LEUC1_METKA
LeuC_1; 3-isopropylmalate dehydratase large subunit
rifcsphigho2_02_scaffold_1413_21
Methanopyrus kandleri, Methanopyrus, Methanopyrales, Methanopyri, Euryarchaeota, Archaea

Not on your lists

17602..18060
-----------------
DNA (459bp)
protein (153aa)
3-isopropylmalate dehydratase small subunit 1 n=1 Tax=Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938) RepID=LEUD1_METKA
LeuD_1; 3-isopropylmalate dehydratase small subunit
rifcsphigho2_02_scaffold_1413_22
RBG_16_Euryarchaeota_68_13_curated, Euryarchaeota, Archaea

Not on your lists

18057..19142
-----------------
DNA (1086bp)
protein (362aa)
3-isopropylmalate dehydrogenase (EC:1.1.1.85)
3-isopropylmalate dehydrogenase n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CT95_PSEUX
rifcsphigho2_02_scaffold_1413_23
CG_Elusi_05, Elusimicrobia, Bacteria

Not on your lists

19139..20785
-----------------
DNA (1647bp)
protein (549aa)
Radical SAM domain protein id=1870909 bin=GWB2_Proteobacteria_55_19 species=Thermodesulfatator indicus genus=Thermodesulfatator taxon_order=Thermodesulfobacteriales taxon_class=Thermodesulfobacteria phylum=Thermodesulfobacteria tax=GWB2_Proteobacteria_55_19 organism_group=Proteobacteria organism_desc=Good
B12 binding domain/radical SAM domain fusion protein
rifcsphigho2_02_scaffold_1413_24
CG_Micra_02, Micraarchaeota, Archaea

Not on your lists

comp(20782..21423)
-----------------
DNA (642bp)
protein (214aa)
rifcsphigho2_02_scaffold_1413_25
Desulfovibrio africanus, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21492..22814)
-----------------
DNA (1323bp)
protein (441aa)
Phenylacetate--CoA ligase n=1 Tax=Desulfovibrio africanus str. Walvis Bay RepID=F3YVL9_DESAF
phenylacetate--CoA ligase
rifcsphigho2_02_scaffold_1413_26
RBG_16_Deltaproteobacteria_49_23_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22928..24202
-----------------
DNA (1275bp)
protein (425aa)
hypothetical protein n=1 Tax=Hydrogenedentes bacterium JGI 0000039-J10 RepID=UPI0003716520
class I and II aminotransferase
rifcsphigho2_02_scaffold_1413_27
RBG_13_Woesearchaeota_36_6_curated, Woesearchaeota, DPANN, Archaea

Not on your lists

24175..24702
-----------------
DNA (528bp)
protein (176aa)
rifcsphigho2_02_scaffold_1413_28

Not on your lists

24702..25391
-----------------
DNA (690bp)
protein (230aa)
hypothetical protein id=5048072 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
hypothetical protein
rifcsphigho2_02_scaffold_1413_29
unknown

Not on your lists

25391..25777
-----------------
DNA (387bp)
protein (129aa)

This feature has no annotations

rifcsphigho2_02_scaffold_1413_30
unknown

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25774..26166
-----------------
DNA (393bp)
protein (131aa)

This feature has no annotations

Displaying items 1-30 of 42 in total

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