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rifcsphigho2_02_scaffold_3401

Search features with annotation key words

Displaying items 1-30 of 37 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsphigho2_02_scaffold_3401_1
unknown

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2..70
-----------------
DNA (69bp)
protein (23aa)

This feature has no annotations

rifcsphigho2_02_scaffold_3401_2
CG_Woesearch_02, Woesearchaeota, Archaea

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299..829
-----------------
DNA (531bp)
protein (177aa)
rps13p; 30S ribosomal protein S13p; K02952 small subunit ribosomal protein S13 Tax=CG_Woesearch_02
30S ribosomal protein S13P id=5799893 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
rps13p; 30S ribosomal protein S13
rifcsphigho2_02_scaffold_3401_3
RBG_13_Woesearchaeota_36_6_curated, Woesearchaeota, DPANN, Archaea

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981..1526
-----------------
DNA (546bp)
protein (182aa)
30S ribosomal protein S4 n=1 Tax=Thermococcus litoralis DSM 5473 RepID=H3ZP85_THELI
30S ribosomal protein S4 Tax=RBG_13_Woesearchaeota_36_6_curated
30S ribosomal protein S4P
rifcsphigho2_02_scaffold_3401_4
CG_Woesearch_01, Woesearchaeota, Archaea

Not on your lists


1551..2045
-----------------
DNA (495bp)
protein (165aa)
rps11p; 30S ribosomal protein S11; K02948 small subunit ribosomal protein S11 Tax=CG_Woesearch_01
30S ribosomal protein S11 id=5799891 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
rps11p; 30S ribosomal protein S11P
rifcsphigho2_02_scaffold_3401_5
CG_Woesearch_01, Woesearchaeota, Archaea

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2172..2981
-----------------
DNA (810bp)
protein (270aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI0003621DCB
DNA-directed RNA polymerase, alpha subunit/40 kD subunit Tax=CG_Woesearch_01
DNA-directed RNA polymerase subunit D
rifcsphigho2_02_scaffold_3401_trna_1
unknown

Not on your lists

3071..3200
-----------------
DNA (130bp)
transferRNA
rifcsphigho2_02_scaffold_3401_6
Desulfurococcus kamchatkensis, Desulfurococcus, Desulfurococcales, Thermoprotei, Crenarchaeota, Archaea

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3257..3616
-----------------
DNA (360bp)
protein (120aa)
50S ribosomal protein L18e n=1 Tax=Desulfurococcus kamchatkensis (strain 1221n / DSM 18924) RepID=B8D6F7_DESK1
50S ribosomal protein L18e
50S ribosomal protein L18e {ECO:0000256|HAMAP-Rule:MF_00329}; TaxID=490899 species="Archaea; Crenarchaeota; Thermoprotei; Desulfurococcales; Desulfurococcaceae; Desulfurococcus.;" source="Desulfurococ
rifcsphigho2_02_scaffold_3401_7

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3627..4046
-----------------
DNA (420bp)
protein (140aa)
50S ribosomal protein L13P n=10 Tax=Thermococcus RepID=RL13_PYRKO id=5103680 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
Marine sediment metagenome DNA, contig: S01H1_S00916 {ECO:0000313|EMBL:GAF93287.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagen
50S ribosomal protein L13P
rifcsphigho2_02_scaffold_3401_8
CG_Woesearch_02, Woesearchaeota, Archaea

Not on your lists


4043..4441
-----------------
DNA (399bp)
protein (133aa)
30S ribosomal protein S9 n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI000363BEDB
30S ribosomal protein S9; K02996 small subunit ribosomal protein S9 Tax=CG_Woesearch_02
30S ribosomal protein S9
rifcsphigho2_02_scaffold_3401_9
CG_Pacearch_04, Pacearchaeota, Archaea

Not on your lists


4536..4733
-----------------
DNA (198bp)
protein (66aa)
RNA polymerase, N/8 Kd subunits; K03058 DNA-directed RNA polymerase subunit N [EC:2.7.7.6] Tax=CG_Pacearch_04
DNA-directed RNA polymerase subunit N n=1 Tax=uncultured organism HF70_19B12 RepID=Q2Q0G7_9ZZZZ id=5103677 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
DNA-directed RNA polymerase subunit N
rifcsphigho2_02_scaffold_3401_10
unknown

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comp(4730..4945)
-----------------
DNA (216bp)
protein (72aa)

This feature has no annotations

rifcsphigho2_02_scaffold_3401_11
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

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5461..6963
-----------------
DNA (1503bp)
protein (501aa)
Putative uncharacterized protein n=1 Tax=uncultured archaeon GZfos26G2 RepID=Q64BS7_9ARCH rbh
hypothetical protein Tax=RBG_16_Euryarchaeota_41_19_curated
hypothetical protein
rifcsphigho2_02_scaffold_3401_12
CG_Woesearch_02, Woesearchaeota, Archaea

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7370..7753
-----------------
DNA (384bp)
protein (128aa)
hypothetical protein Tax=CG_Woesearch_02
transmembrane_regions 7..28 id=86730 bin=ACD58 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=ACD58 tax=ACD58 organism_group=ACD58 (Berkelbacteria) organism_desc=ACD58
hypothetical protein
rifcsphigho2_02_scaffold_3401_13
Candidatus Ishikawaella capsulata, Candidatus Ishikawaella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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7839..8072
-----------------
DNA (234bp)
protein (78aa)
Uncharacterized protein {ECO:0000313|EMBL:BAH83075.1}; TaxID=476281 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Candidatus Ishikawaella.;" source="Ca
rifcsphigho2_02_scaffold_3401_14
RBG_13_Woesearchaeota_36_6_curated, Woesearchaeota, DPANN, Archaea

Not on your lists

8087..10963
-----------------
DNA (2877bp)
protein (959aa)
leuS; leucyl-tRNA synthetase (EC:6.1.1.4); K01869 leucyl-tRNA synthetase [EC:6.1.1.4] Tax=RBG_13_Woesearchaeota_36_6_curated
leuS; leucyl-tRNA synthetase (EC:6.1.1.4)
Leucine--tRNA ligase id=5799918 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
rifcsphigho2_02_scaffold_3401_15
unknown

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comp(11031..11357)
-----------------
DNA (327bp)
protein (109aa)

This feature has no annotations

rifcsphigho2_02_scaffold_3401_16
AR4, Woesearchaeaota, DPANN, Archaea

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comp(11766..13862)
-----------------
DNA (2097bp)
protein (699aa)
id=5048629 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
Tax=AR4
rifcsphigho2_02_scaffold_3401_17

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comp(13938..14255)
-----------------
DNA (318bp)
protein (106aa)
ppsA; phosphoenolpyruvate synthase (EC:2.7.9.2); K01007 pyruvate, water dikinase [EC:2.7.9.2] id=5048628 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
Pyruvate, water dikinase {ECO:0000313|EMBL:KHO44935.1}; EC=2.7.9.2 {ECO:0000313|EMBL:KHO44935.1};; TaxID=1579366 species="Archaea.;" source="archaeon GW2011_AR4.;"
phosphoenolpyruvate synthase (EC:2.7.9.2)
rifcsphigho2_02_scaffold_3401_18
GWE2_OD1_38_18, Parcubacteria, Bacteria

Not on your lists

comp(14249..14719)
-----------------
DNA (471bp)
protein (157aa)
phosphoenolpyruvate synthase; K01007 pyruvate, water dikinase [EC:2.7.9.2] id=136563 bin=ACD8 species=ACD8 genus=ACD8 taxon_order=ACD8 taxon_class=ACD8 phylum=OD1-i tax=ACD8 organism_group=OD1-i organism_desc=OD1-i
Phosphoenolpyruvate synthase Tax=GWE2_OD1_38_18
ppsA; phosphoenolpyruvate synthase PpsA
rifcsphigho2_02_scaffold_3401_19
AR4, Woesearchaeaota, DPANN, Archaea

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comp(14886..15935)
-----------------
DNA (1050bp)
protein (350aa)
id=5048627 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
Tax=AR4
rifcsphigho2_02_scaffold_3401_20
unknown

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comp(15972..16103)
-----------------
DNA (132bp)
protein (44aa)

This feature has no annotations

rifcsphigho2_02_scaffold_3401_21
RBG_13_Pacearchaeota_36_9_curated, Pacearchaeota, DPANN, Archaea

Not on your lists

16265..17392
-----------------
DNA (1128bp)
protein (376aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI000380BDC3
transcriptional regulator TrmB Tax=RBG_13_Pacearchaeota_36_9_curated
transcriptional regulator TrmB
rifcsphigho2_02_scaffold_3401_22
CG_Woesearch_02, Woesearchaeota, Archaea

Not on your lists

17515..18375
-----------------
DNA (861bp)
protein (287aa)
inorganic polyphosphate/ATP-NAD Kinase; K00858 NAD+ kinase [EC:2.7.1.23] Tax=CG_Woesearch_02
inorganic polyphosphate/ATP-NAD kinase; K00858 NAD+ kinase [EC:2.7.1.23] id=5048517 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
inorganic polyphosphate/ATP-NAD Kinase
rifcsphigho2_02_scaffold_3401_23
Methanosarcina sp. MTP4, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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18390..19064
-----------------
DNA (675bp)
protein (225aa)
Thiamine-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00097, ECO:0000256|RuleBase:RU003826}; Short=TP synthase {ECO:0000256|HAMAP-Rule:MF_00097};; Short=TPS {ECO:0000256|HAMAP-Rule:MF_00097};; EC=2.5
Thiamine-phosphate synthase n=1 Tax=Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) RepID=THIE_METAC
thiE; thiamine-phosphate pyrophosphorylase
rifcsphigho2_02_scaffold_3401_24
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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19287..19952
-----------------
DNA (666bp)
protein (222aa)
thiamine-phosphate diphosphorylase (EC:2.5.1.3)
Thiamine-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00097, ECO:0000256|RuleBase:RU003826}; Short=TP synthase {ECO:0000256|HAMAP-Rule:MF_00097};; Short=TPS {ECO:0000256|HAMAP-Rule:MF_00097};; EC=2.5
thiamine-phosphate pyrophosphorylase n=1 Tax=Fusobacterium russii RepID=UPI0003A41550
rifcsphigho2_02_scaffold_3401_25
RBG_13_Euryarchaeota_31_8_curated, Euryarchaeota, Archaea

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19921..20937
-----------------
DNA (1017bp)
protein (339aa)
thiamine-monophosphate kinase; K00946 thiamine-monophosphate kinase [EC:2.7.4.16] Tax=RBG_13_Euryarchaeota_31_8_curated
thiamine-monophosphate kinase (EC:2.7.4.16)
Thiamine-monophosphate kinase n=1 Tax=uncultured organism RepID=M1PWT1_9ZZZZ
rifcsphigho2_02_scaffold_3401_26
AR13, Pacearchaeaota, DPANN, Archaea

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comp(21009..21947)
-----------------
DNA (939bp)
protein (313aa)
Uncharacterized protein n=1 Tax=Thermococcus barophilus (strain DSM 11836 / MP) RepID=F0LL48_THEBM
Putative uncharacterized protein Tax=AR13
Hypothetical protein
rifcsphigho2_02_scaffold_3401_27

Not on your lists

comp(21957..22589)
-----------------
DNA (633bp)
protein (211aa)
Uncharacterized protein n=1 Tax=Thermococcus barophilus (strain DSM 11836 / MP) RepID=F0LL47_THEBM
Uncharacterized protein {ECO:0000313|EMBL:KKK97322.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
hypothetical protein
rifcsphigho2_02_scaffold_3401_28

Not on your lists

23059..23856
-----------------
DNA (798bp)
protein (266aa)
Prolipoprotein diacylglyceryl transferase n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6I0P8_9BACT id=5103549 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
Prolipoprotein diacylglyceryl transferase
Prolipoprotein diacylglyceryl transferase {ECO:0000313|EMBL:AJF62830.1}; TaxID=1579378 species="Archaea.;" source="archaeon GW2011_AR20.;"
rifcsphigho2_02_scaffold_3401_29
RBG_13_Woesearchaeota_36_6_curated, Woesearchaeota, DPANN, Archaea

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comp(24330..24995)
-----------------
DNA (666bp)
protein (222aa)
Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase n=1 Tax=Nanoarchaeum equitans (strain Kin4-M) RepID=FLPA_NANEQ
fibrillarin; K04795 fibrillarin-like pre-rRNA processing protein Tax=RBG_13_Woesearchaeota_36_6_curated
fibrillarin
Displaying items 1-30 of 37 in total

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