ggKbase home page

rifcsphigho2_02_scaffold_100095

Search features with annotation key words

Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsphigho2_02_scaffold_100095_1

Not on your lists

245..676
-----------------
DNA (432bp)
protein (144aa)
deoxyuridine 5'-triphosphate nucleotidohydrolase Dut (EC:3.6.1.23); K01520 dUTP pyrophosphatase [EC:3.6.1.23] id=5044055 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
DUTP pyrophosphatase {ECO:0000313|EMBL:KHO46898.1}; EC=3.6.1.23 {ECO:0000313|EMBL:KHO46898.1};; TaxID=1579366 species="Archaea.;" source="archaeon GW2011_AR4.;"
deoxyuridine 5'-triphosphate nucleotidohydrolase Dut (EC:3.6.1.23)
rifcsphigho2_02_scaffold_100095_2
unknown

Not on your lists

627..842
-----------------
DNA (216bp)
protein (72aa)

This feature has no annotations

rifcsphigho2_02_scaffold_100095_3
unknown

Not on your lists

799..960
-----------------
DNA (162bp)
protein (54aa)

This feature has no annotations

rifcsphigho2_02_scaffold_100095_4
unknown

Not on your lists

1260..1625
-----------------
DNA (366bp)
protein (122aa)

This feature has no annotations

rifcsphigho2_02_scaffold_100095_5
GWA2_OD1_31_28_partial, Parcubacteria, Bacteria

Not on your lists

comp(1677..2336)
-----------------
DNA (660bp)
protein (220aa)
dTMP kinase (EC:2.7.4.9)
thymidylate kinase; K00943 dTMP kinase [EC:2.7.4.9] id=5241644 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
Probable thymidylate kinase Tax=GWA2_OD1_31_28_partial
rifcsphigho2_02_scaffold_100095_6
CG_Omnitr_04, Omnitrophica, Bacteria

Not on your lists

2452..2979
-----------------
DNA (528bp)
protein (176aa)
hypothetical protein Tax=CG_Omnitr_04
hypothetical protein id=16923393 bin=RBG_16_Aminicenantes_63_16_plus species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=RBG_16_Aminicenantes_63_16_plus organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate Resolve three similar GC_Cov Aminicentantes bins with ESOM
hypothetical protein
rifcsphigho2_02_scaffold_100095_7
AR15, Woesearchaeaota, DPANN, Archaea

Not on your lists

comp(2966..3241)
-----------------
DNA (276bp)
protein (92aa)
UPF0235 protein MSWAN_0547 id=5799721 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
UPF0235 protein MSWAN_0547 Tax=AR15
hypothetical protein
rifcsphigho2_02_scaffold_100095_8

Not on your lists

comp(3238..3555)
-----------------
DNA (318bp)
protein (106aa)
Marine sediment metagenome DNA, contig: S12H4_L00950 {ECO:0000313|EMBL:GAI82646.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagen
DNA-directed RNA polymerase subunit id=5799719 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
DNA-directed RNA polymerase subunit M
rifcsphigho2_02_scaffold_100095_9
AR4, Woesearchaeaota, DPANN, Archaea

Not on your lists

comp(3569..4216)
-----------------
DNA (648bp)
protein (216aa)
Peptidase S26B, eukaryotic signal peptidase id=5043727 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
Peptidase S26B, eukaryotic signal peptidase Tax=AR4
hypothetical protein
rifcsphigho2_02_scaffold_100095_10
CG_Woesearch_02, Woesearchaeota, Archaea

Not on your lists

4610..5197
-----------------
DNA (588bp)
protein (196aa)
NMD3-related protein; K07562 nonsense-mediated mRNA decay protein 3 Tax=CG_Woesearch_02
Predicted nonsense mediated mRNA decay protein id=5800424 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
hypothetical protein
rifcsphigho2_02_scaffold_100095_11
GWC2_Pelobacteraceae_58_13_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5159..5986)
-----------------
DNA (828bp)
protein (276aa)
Phospholipase, patatin family, putative id=3523189 bin=GWC2_Pelobacter_58_13 species=Pelobacter carbinolicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Pelobacter_58_13 organism_group=Deltaproteobacteria organism_desc=Good +
alpha-beta hydrolase family esterase; K07001 NTE family protein Tax=GWC2_Pelobacteraceae_58_13_curated
patatin
Displaying 11 items

View Taxonomy