ggKbase home page

rifcsplowo2_01_scaffold_20328

Search features with annotation key words

Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsplowo2_01_scaffold_20328_1
GWB1_OP11_39_10b, Woesebacteria, Microgenomates, Bacteria

Not on your lists

1..351
-----------------
DNA (351bp)
protein (117aa)
Uncharacterized protein {ECO:0000313|EMBL:KKQ93768.1}; TaxID=1618573 species="Bacteria; Microgenomates.;" source="Microgenomates (Woesebacteria) bacterium GW2011_GWB1_39_10b.;"
transmembrane_regions 7..29 id=43575 bin=ACD38 species=ACD38 genus=ACD38 taxon_order=ACD38 taxon_class=ACD38 phylum=OP11 tax=ACD38 organism_group=OP11 (Microgenomates) organism_desc=OP11
rifcsplowo2_01_scaffold_20328_2
unknown

Not on your lists

comp(353..868)
-----------------
DNA (516bp)
protein (172aa)

This feature has no annotations

rifcsplowo2_01_scaffold_20328_3
CG_Micra_01, Micraarchaeota, Archaea

Not on your lists

comp(840..2504)
-----------------
DNA (1665bp)
protein (555aa)
Tax=CG_Micra_01
rifcsplowo2_01_scaffold_20328_4
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

Not on your lists


2768..3058
-----------------
DNA (291bp)
protein (97aa)
30S ribosomal protein S17P n=1 Tax=Methanothermus fervidus (strain ATCC 43054 / DSM 2088 / JCM 10308 / V24 S) RepID=E3GZC8_METFV
30S ribosomal protein S17
30S ribosomal protein S17 Tax=CSP1_1_Thaumarchaeota
rifcsplowo2_01_scaffold_20328_5

Not on your lists


3061..3459
-----------------
DNA (399bp)
protein (133aa)
50S ribosomal protein L14 n=1 Tax=Methanolinea tarda NOBI-1 RepID=G6FIT2_9EURY
50S ribosomal protein L14 {ECO:0000256|HAMAP-Rule:MF_01367}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
rpl14p; 50S ribosomal protein L14P
rifcsplowo2_01_scaffold_20328_6

Not on your lists


3472..3906
-----------------
DNA (435bp)
protein (145aa)
50S ribosomal protein L24P n=1 Tax=Methanocaldococcus infernus (strain DSM 11812 / JCM 15783 / ME) RepID=D5VRU1_METIM
50S ribosomal protein L24P {ECO:0000313|EMBL:AJS12294.1}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
LSU ribosomal protein L26e (L24p)
rifcsplowo2_01_scaffold_20328_7
Methanobacterium formicicum, Methanobacterium, Methanobacteriales, Methanobacteria, Euryarchaeota, Archaea

Not on your lists

3899..4606
-----------------
DNA (708bp)
protein (236aa)
30S ribosomal protein S4e n=1 Tax=Methanobacterium sp. MB1 RepID=U6EDM5_9EURY
rps4e; 30S ribosomal protein S4e
30S ribosomal protein S4e {ECO:0000256|HAMAP-Rule:MF_00485}; TaxID=2162 species="Archaea; Euryarchaeota; Methanobacteria; Methanobacteriales; Methanobacteriaceae; Methanobacterium.;" source="Methanoba
rifcsplowo2_01_scaffold_20328_8

Not on your lists


4606..5115
-----------------
DNA (510bp)
protein (170aa)
50S ribosomal protein L5 n=1 Tax=Methanothermococcus thermolithotrophicus RepID=UPI00037F31E1
50S ribosomal protein L5P {ECO:0000313|EMBL:AJS12241.1}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
50S ribosomal protein L5
rifcsplowo2_01_scaffold_20328_9

Not on your lists

5115..5282
-----------------
DNA (168bp)
protein (56aa)
40S ribosomal protein S29 n=1 Tax=mine drainage metagenome RepID=T1B0J0_9ZZZZ
40S ribosomal protein S29 {ECO:0000313|EMBL:EQD66366.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
small subunit ribosomal protein S14
rifcsplowo2_01_scaffold_20328_10

Not on your lists


5294..5680
-----------------
DNA (387bp)
protein (129aa)
30S ribosomal protein S8 n=3 Tax=unclassified Thermoplasmatales RepID=M7T8T6_9EURY
30S ribosomal protein S8 {ECO:0000313|EMBL:AJS12240.1}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
rps8p; 30S ribosomal protein S8
rifcsplowo2_01_scaffold_20328_11
Methanothermobacter marburgensis, Methanothermobacter, Methanobacteriales, Methanobacteria, Euryarchaeota, Archaea

Not on your lists


5670..6170
-----------------
DNA (501bp)
protein (167aa)
50S ribosomal protein L6 n=1 Tax=Methanothermobacter marburgensis (strain DSM 2133 / 14651 / NBRC 100331 / OCM 82 / Marburg) RepID=D9PV56_METTM
rpl6p; 50S ribosomal protein L6P
50S ribosomal protein L6 {ECO:0000256|HAMAP-Rule:MF_01365}; TaxID=79929 species="Archaea; Euryarchaeota; Methanobacteria; Methanobacteriales; Methanobacteriaceae; Methanothermobacter.;" source="Methan
rifcsplowo2_01_scaffold_20328_12
CG_Micra_02, Micraarchaeota, Archaea

Not on your lists

6174..6527
-----------------
DNA (354bp)
protein (118aa)
LSU ribosomal protein L32E n=1 Tax=Methanothermus fervidus (strain ATCC 43054 / DSM 2088 / JCM 10308 / V24 S) RepID=E3GZD6_METFV
50S ribosomal protein L32e; K02912 large subunit ribosomal protein L32e Tax=CG_Micra_02
50S ribosomal protein L32e
rifcsplowo2_01_scaffold_20328_13
nanoarchaeote Nst1, Nanoarchaeota, Archaea

Not on your lists

6532..6978
-----------------
DNA (447bp)
protein (149aa)
50S ribosomal protein L19e n=1 Tax=nanoarchaeote Nst1 RepID=R1E564_9ARCH
50S ribosomal protein L19e {ECO:0000256|HAMAP-Rule:MF_01475}; TaxID=1294122 species="Archaea; Nanoarchaeota.;" source="nanoarchaeote Nst1.;"
rpl19e; 50S ribosomal protein L19
rifcsplowo2_01_scaffold_20328_14
nanoarchaeote Nst1, Nanoarchaeota, Archaea

Not on your lists


6989..7477
-----------------
DNA (489bp)
protein (163aa)
50S ribosomal protein L18P n=1 Tax=nanoarchaeote Nst1 RepID=R1G9E4_9ARCH
50S ribosomal protein L18 {ECO:0000256|HAMAP-Rule:MF_01337, ECO:0000256|SAAS:SAAS00243986}; TaxID=1294122 species="Archaea; Nanoarchaeota.;" source="nanoarchaeote Nst1.;"
50S ribosomal protein L18
rifcsplowo2_01_scaffold_20328_15
CG_Micra_05, Micraarchaeota, Archaea

Not on your lists


7490..8149
-----------------
DNA (660bp)
protein (220aa)
30S ribosomal protein S5 n=1 Tax=Methanocaldococcus vulcanius (strain ATCC 700851 / DSM 12094 / M7) RepID=C9RES6_METVM
rps5p; 30S ribosomal protein S5; K02988 small subunit ribosomal protein S5 Tax=CG_Micra_05
rps5p; 30S ribosomal protein S5
rifcsplowo2_01_scaffold_20328_16
CG_Micra_05, Micraarchaeota, Archaea

Not on your lists


8167..8580
-----------------
DNA (414bp)
protein (138aa)
50S ribosomal protein L30P n=1 Tax=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) RepID=RL30_PYRHO
rpl30p; 50S ribosomal protein L30; K02907 large subunit ribosomal protein L30 Tax=CG_Micra_05
rpl30p; 50S ribosomal protein L30
rifcsplowo2_01_scaffold_20328_17

Not on your lists


8580..9056
-----------------
DNA (477bp)
protein (159aa)
50S ribosomal protein L15P n=1 Tax=Methanocaldococcus vulcanius (strain ATCC 700851 / DSM 12094 / M7) RepID=C9RES4_METVM
50S ribosomal protein L15 {ECO:0000256|HAMAP-Rule:MF_01341}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
rpl15p; 50S ribosomal protein L15
rifcsplowo2_01_scaffold_20328_18
unknown

Not on your lists

9053..9673
-----------------
DNA (621bp)
protein (207aa)

This feature has no annotations

rifcsplowo2_01_scaffold_20328_19
unknown

Not on your lists

comp(9670..9927)
-----------------
DNA (258bp)
protein (86aa)

This feature has no annotations

Displaying 19 items

View Taxonomy