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rifcsplowo2_01_scaffold_13670

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Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsplowo2_01_scaffold_13670_1
CG_Micra_05, Micraarchaeota, Archaea

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comp(43..1380)
-----------------
DNA (1338bp)
protein (446aa)
phospho-sugar mutase; K15778 phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] Tax=CG_Micra_05
Putative phosphoglucosamine mutase n=1 Tax=Methanobacterium sp. MB1 RepID=U6E9K6_9EURY
phosphomannomutase
rifcsplowo2_01_scaffold_13670_2
RBG_16_Zixibacteria_50_21_curated, Zixibacteria, Bacteria

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comp(1393..2319)
-----------------
DNA (927bp)
protein (309aa)
hypothetical protein; K01784 UDP-glucose 4-epimerase [EC:5.1.3.2] Tax=RBG_16_Zixibacteria_50_21_curated
Vi polysaccharide biosynthesis protein vipB/tviC n=1 Tax=Oceanobacillus kimchii RepID=UPI000349B22E
UDP-glucose 4-epimerase
rifcsplowo2_01_scaffold_13670_3
GWA2_OP3X_41_15_curated, OP3X, Bacteria

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comp(2376..3122)
-----------------
DNA (747bp)
protein (249aa)
hypothetical protein Tax=GWA2_OP3X_41_15_curated
hypothetical protein id=5042051 bin=GW2011_AR5 species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=GW2011_AR5 organism_group=Archaea organism_desc=gwa2_.48_18 Replace with curated version!
membrane protein
rifcsplowo2_01_scaffold_13670_4
Methanocella conradii, Methanocella, Methanocellales, Methanomicrobia, Euryarchaeota, Archaea

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comp(3127..4206)
-----------------
DNA (1080bp)
protein (360aa)
Small GTP-binding domain protein n=1 Tax=Methanocella conradii (strain DSM 24694 / JCM 17849 / CGMCC 1.5162 / HZ254) RepID=H8I911_METCZ
GTP-binding domain-containing protein
Small GTP-binding domain protein {ECO:0000313|EMBL:AFC99014.1}; TaxID=1041930 species="Archaea; Euryarchaeota; Methanomicrobia; Methanocellales; Methanocellaceae; Methanocella.;" source="Methanocella
rifcsplowo2_01_scaffold_13670_5

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comp(4206..5660)
-----------------
DNA (1455bp)
protein (485aa)
Putative methylthioribose-1-phosphate isomerase n=1 Tax=Thermoplasmatales archaeon E-plasma RepID=T0LQG2_9EURY
Marine sediment metagenome DNA, contig: S01H4_L00836 {ECO:0000313|EMBL:GAG66246.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagen
translation initiation factor IF-2
rifcsplowo2_01_scaffold_13670_6
Bacteroides sp. CAG:443, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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5688..6263
-----------------
DNA (576bp)
protein (192aa)
5-formyltetrahydrofolate cyclo-ligase {ECO:0000256|RuleBase:RU361279}; EC=6.3.3.2 {ECO:0000256|RuleBase:RU361279};; TaxID=1262739 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroi
5-formyltetrahydrofolate cyclo-ligase (EC:6.3.3.2)
5-formyltetrahydrofolate cyclo-ligase n=1 Tax=Bacteroides sp. CAG:443 RepID=R6MJY0_9BACE
rifcsplowo2_01_scaffold_13670_7
CG_Micra_05, Micraarchaeota, Archaea

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6256..7233
-----------------
DNA (978bp)
protein (326aa)
Uncharacterized protein (Fragment) n=1 Tax=uncultured bacterium RepID=K2B6X9_9BACT
hypothetical protein Tax=CG_Micra_05
HlyC/CorC-like protein
rifcsplowo2_01_scaffold_13670_8
CG_Micra_05, Micraarchaeota, Archaea

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7264..7896
-----------------
DNA (633bp)
protein (211aa)
purN; phosphoribosylglycinamide formyltransferase (EC:2.1.2.2); K11175 phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2] Tax=CG_Micra_05
purN; phosphoribosylglycinamide formyltransferase (EC:2.1.2.2)
hypothetical protein n=1 Tax=Atribacteria bacterium SCGC AAA252-M02 RepID=UPI000374F7B5
rifcsplowo2_01_scaffold_13670_9
RBG_16_OP11_Woesebacteria_36_11_curated, Woesebacteria, Microgenomates, Bacteria

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7934..8635
-----------------
DNA (702bp)
protein (234aa)
Glycosyl transferase, putative n=1 Tax=Thermosipho africanus (strain TCF52B) RepID=B7IFT0_THEAB
glycosyl transferase family protein Tax=RBG_16_OP11_Woesebacteria_36_11_curated
glycosyl transferase
rifcsplowo2_01_scaffold_13670_10
CG_Micra_05, Micraarchaeota, Archaea

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comp(8646..10082)
-----------------
DNA (1437bp)
protein (479aa)
cysS; cysteinyl-tRNA synthetase (EC:6.1.1.16); K01883 cysteinyl-tRNA synthetase [EC:6.1.1.16] Tax=CG_Micra_05
Cysteine--tRNA ligase n=1 Tax=Pyrococcus sp. (strain NA2) RepID=F4HNM7_PYRSN
cysteinyl-tRNA synthetase
rifcsplowo2_01_scaffold_13670_11
Methanocaldococcus infernus, Methanocaldococcus, Methanococcales, Methanococci, Euryarchaeota, Archaea

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comp(10326..14231)
-----------------
DNA (3906bp)
protein (1302aa)
DNA polymerase II, large subunit DP2 (EC:2.7.7.7)
DNA polymerase II large subunit {ECO:0000256|HAMAP-Rule:MF_00324}; Short=Pol II {ECO:0000256|HAMAP-Rule:MF_00324};; EC=2.7.7.7 {ECO:0000256|HAMAP-Rule:MF_00324};; TaxID=573063 species="Archaea; Euryar
DNA polymerase II large subunit n=1 Tax=Methanocaldococcus infernus (strain DSM 11812 / JCM 15783 / ME) RepID=D5VTT0_METIM rbh
rifcsplowo2_01_scaffold_13670_12
CG_Micra_05, Micraarchaeota, Archaea

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comp(14241..15665)
-----------------
DNA (1425bp)
protein (475aa)
polB; family D DNA polymerase small subunit; K02323 DNA polymerase II small subunit [EC:2.7.7.7] Tax=CG_Micra_05
DNA polymerase II small subunit n=1 Tax=mine drainage metagenome RepID=T1ALF1_9ZZZZ
DNA polymerase II small subunit
rifcsplowo2_01_scaffold_13670_13
CG_Micra_05, Micraarchaeota, Archaea

Not on your lists

comp(15677..15934)
-----------------
DNA (258bp)
protein (86aa)
hypothetical protein; K09721 hypothetical protein Tax=CG_Micra_05
hypothetical protein
hypothetical protein; K09721 hypothetical protein id=5241424 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
rifcsplowo2_01_scaffold_13670_14
CG_Micra_01, Micraarchaeota, Archaea

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16716..16970
-----------------
DNA (255bp)
protein (85aa)
Putative uncharacterized protein n=1 Tax=Candidatus Micrarchaeum acidiphilum ARMAN-2 RepID=C7DHA2_9EURY
hypothetical protein
hypothetical protein Tax=CG_Micra_01
rifcsplowo2_01_scaffold_13670_15
unknown

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16963..17151
-----------------
DNA (189bp)
protein (63aa)

This feature has no annotations

rifcsplowo2_01_scaffold_13670_16
CG_Micra_05, Micraarchaeota, Archaea

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comp(17116..17571)
-----------------
DNA (456bp)
protein (152aa)
UPF0218 protein MA_3694 n=1 Tax=Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) RepID=Y3694_METAC
hypothetical protein; K09735 hypothetical protein Tax=CG_Micra_05
hypothetical protein
rifcsplowo2_01_scaffold_13670_17
unknown

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comp(17619..18215)
-----------------
DNA (597bp)
protein (199aa)

This feature has no annotations

rifcsplowo2_01_scaffold_13670_18
unknown

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comp(18217..19794)
-----------------
DNA (1578bp)
protein (526aa)

This feature has no annotations

rifcsplowo2_01_scaffold_13670_19
Archaeoglobus fulgidus, Archaeoglobus, Archaeoglobales, Archaeoglobi, Euryarchaeota, Archaea

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19843..20478
-----------------
DNA (636bp)
protein (212aa)
Putative uncharacterized protein n=1 Tax=Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) RepID=O29263_ARCFU
putative membrane-associated protein/domain protein
Uncharacterized protein {ECO:0000313|EMBL:AAB90250.1}; TaxID=224325 species="Archaea; Euryarchaeota; Archaeoglobi; Archaeoglobales; Archaeoglobaceae; Archaeoglobus.;" source="Archaeoglobus fulgidus (s
rifcsplowo2_01_scaffold_13670_20
Methanococcus aeolicus, Methanococcus, Methanococcales, Methanococci, Euryarchaeota, Archaea

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comp(20465..20818)
-----------------
DNA (354bp)
protein (118aa)
ribose-5-phosphate isomerase A (EC:5.3.1.6)
Ribose-5-phosphate isomerase A {ECO:0000255|HAMAP-Rule:MF_00170}; EC=5.3.1.6 {ECO:0000255|HAMAP-Rule:MF_00170};; Phosphoriboisomerase A {ECO:0000255|HAMAP-Rule:MF_00170}; Short=PRI {ECO:0000255|HAMAP-
ribose 5-phosphate isomerase n=1 Tax=Methanothermococcus thermolithotrophicus RepID=UPI00037D74A1
Displaying 20 items

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