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RIFCSPLOWO2_01_FULL_OD1_43_160_rifcsplowo2_01_scaffold_1476

Search features with annotation key words

Displaying items 1-30 of 93 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPLOWO2_01_FULL_OD1_43_160_rifcsplowo2_01_scaffold_1476_1

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68..346
-----------------
DNA (279bp)
protein (93aa)
Acylphosphatase n=2 Tax=Salinibacter ruber RepID=ACYP_SALRD
Acylphosphatase {ECO:0000313|EMBL:KKT63795.1}; TaxID=1618648 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWA2_44_26.;"
yccX; acylphosphatase
RIFCSPLOWO2_01_FULL_OD1_43_160_rifcsplowo2_01_scaffold_1476_2
GWC2_OD1_43_8, Giovannonibacteria, Parcubacteria, Bacteria

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367..1035
-----------------
DNA (669bp)
protein (223aa)
Undecaprenyl pyrophosphate synthetase n=1 Tax=sediment metagenome RepID=D9PKQ8_9ZZZZ
Isoprenyl transferase {ECO:0000313|EMBL:KKT21881.1}; TaxID=1618656 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWC2_43_8.;"
UDP diphosphate synthase
RIFCSPLOWO2_01_FULL_OD1_43_160_rifcsplowo2_01_scaffold_1476_3
GWA1_OD1_44_29, Giovannonibacteria, Parcubacteria, Bacteria

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comp(1205..1447)
-----------------
DNA (243bp)
protein (81aa)
Uncharacterized protein {ECO:0000313|EMBL:KKT63272.1}; TaxID=1618646 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWA1_44_29.;"
seg id=5803456 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
RIFCSPLOWO2_01_FULL_OD1_43_160_rifcsplowo2_01_scaffold_1476_4

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comp(1449..1739)
-----------------
DNA (291bp)
protein (97aa)
Uncharacterized protein {ECO:0000313|EMBL:KKT91239.1}; TaxID=1618914 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWC1_45_13.;"
RIFCSPLOWO2_01_FULL_OD1_43_160_rifcsplowo2_01_scaffold_1476_5
GWC2_OD1_43_8, Giovannonibacteria, Parcubacteria, Bacteria

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comp(1755..2105)
-----------------
DNA (351bp)
protein (117aa)
Uncharacterized protein {ECO:0000313|EMBL:KKT21882.1}; TaxID=1618656 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWC2_43_8.;"
transmembrane_regions id=5803457 bin=OD1_GWC2_34_28 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
RIFCSPLOWO2_01_FULL_OD1_43_160_rifcsplowo2_01_scaffold_1476_6
GWC2_OD1_43_8, Giovannonibacteria, Parcubacteria, Bacteria

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comp(2173..2532)
-----------------
DNA (360bp)
protein (120aa)
Uncharacterized protein {ECO:0000313|EMBL:KKT21883.1}; TaxID=1618656 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWC2_43_8.;"
transmembrane_regions id=5803523 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
RIFCSPLOWO2_01_FULL_OD1_43_160_rifcsplowo2_01_scaffold_1476_7

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comp(2556..3431)
-----------------
DNA (876bp)
protein (292aa)
Uncharacterized protein {ECO:0000313|EMBL:KKT63791.1}; TaxID=1618648 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWA2_44_26.;"
seg 12..31 id=16400 bin=ACD1 species=ACD1 genus=ACD1 taxon_order=ACD1 taxon_class=ACD1 phylum=OD1-i tax=ACD1 organism_group=OD1-i organism_desc=OD1-i
RIFCSPLOWO2_01_FULL_OD1_43_160_rifcsplowo2_01_scaffold_1476_8
GWC2_OD1_43_8, Giovannonibacteria, Parcubacteria, Bacteria

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comp(3428..4717)
-----------------
DNA (1290bp)
protein (430aa)
Extracellular solute-binding protein family 1 {ECO:0000313|EMBL:KKT21885.1}; TaxID=1618656 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWC2_43_8.;"
Extracellular solute-binding protein family 1 id=3736481 bin=GWC2_OD1_43_27 species=ACD11 genus=ACD11 taxon_order=ACD11 taxon_class=ACD11 phylum=OD1-i tax=GWC2_OD1_43_27 organism_group=OD1 (Parcubacteria) organism_desc=Same as C1_43_61 and D1_43_18 Curated this version (complete)
family 1 extracellular solute-binding protein
RIFCSPLOWO2_01_FULL_OD1_43_160_rifcsplowo2_01_scaffold_1476_9
GWA1_OD1_43_15, Giovannonibacteria, Parcubacteria, Bacteria

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comp(4721..5257)
-----------------
DNA (537bp)
protein (179aa)
Methyltransferase type 11 Tax=GWA1_OD1_43_15
hypothetical protein id=130444 bin=ACD7 species=ACD7 genus=ACD7 taxon_order=ACD7 taxon_class=ACD7 phylum=OD1-i tax=ACD7 organism_group=OD1-i organism_desc=OD1-i
type 11 methyltransferase
RIFCSPLOWO2_01_FULL_OD1_43_160_rifcsplowo2_01_scaffold_1476_10

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comp(5265..6191)
-----------------
DNA (927bp)
protein (309aa)
Fic family protein {ECO:0000313|EMBL:KKS96795.1}; TaxID=1618651 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWB1_43_13.;"
filamentation induced by cAMP protein Fic id=86974 bin=ACD58 species=ACD58 genus=ACD58 taxon_order=ACD58 taxon_class=ACD58 phylum=ACD58 tax=ACD58 organism_group=ACD58 (Berkelbacteria) organism_desc=ACD58
Fic family protein
RIFCSPLOWO2_01_FULL_OD1_43_160_rifcsplowo2_01_scaffold_1476_11
GWC2_OD1_43_8, Giovannonibacteria, Parcubacteria, Bacteria

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comp(6310..7437)
-----------------
DNA (1128bp)
protein (376aa)
Cell division protein ftsZ {ECO:0000313|EMBL:KKT21888.1}; TaxID=1618656 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWC2_43_8.;"
id=5227125 bin=RAAC4_OD1 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=RAAC4_OD1 organism_group=OD1 (Parcubacteria)
cell division protein FtsZ
RIFCSPLOWO2_01_FULL_OD1_43_160_rifcsplowo2_01_scaffold_1476_12

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comp(7514..8737)
-----------------
DNA (1224bp)
protein (408aa)
Cell division protein ftsA {ECO:0000313|EMBL:KKT63786.1}; TaxID=1618648 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWA2_44_26.;"
Cell division protein ftsA id=2824401 bin=GWC1_OD1_38_17 species=ACD15 genus=ACD15 taxon_order=ACD15 taxon_class=ACD15 phylum=OD1-i tax=GWC1_OD1_38_17 organism_group=OD1 (Parcubacteria) organism_desc=Good + Candidate for curation
ftsA; Cell division protein ftsA
RIFCSPLOWO2_01_FULL_OD1_43_160_rifcsplowo2_01_scaffold_1476_13
GWC2_OD1_43_8, Giovannonibacteria, Parcubacteria, Bacteria

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comp(8737..9087)
-----------------
DNA (351bp)
protein (117aa)
Endoribonuclease YbeY n=1 Tax=uncultured bacterium RepID=K1Z999_9BACT
Putative rRNA maturation factor {ECO:0000313|EMBL:KKT21890.1}; TaxID=1618656 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWC2_43_8.;"
RIFCSPLOWO2_01_FULL_OD1_43_160_rifcsplowo2_01_scaffold_1476_14

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comp(9084..9566)
-----------------
DNA (483bp)
protein (161aa)
Uncharacterized protein {ECO:0000313|EMBL:KKT63784.1}; TaxID=1618648 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWA2_44_26.;"
GatB/Yqey domain-containing protein; K09117 hypothetical protein id=14424493 bin=bin1_lowGC species=Thermotoga petrophila genus=Thermotoga taxon_order=Thermotogales taxon_class=Thermotogae phylum=Thermotogae tax=bin1_lowGC organism_group=Unknown_CP
aspartyl-tRNA amidotransferase subunit B
RIFCSPLOWO2_01_FULL_OD1_43_160_rifcsplowo2_01_scaffold_1476_15

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comp(9580..9804)
-----------------
DNA (225bp)
protein (75aa)
Uncharacterized protein {ECO:0000313|EMBL:KKT63783.1}; TaxID=1618648 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWA2_44_26.;"
hypothetical protein cdiviTM7_02609 id=4731848 bin=GWC2_OD1_43_27 species=ACD11 genus=ACD11 taxon_order=ACD11 taxon_class=ACD11 phylum=OD1-i tax=GWC2_OD1_43_27 organism_group=OD1 (Parcubacteria) organism_desc=Same as C1_43_61 and D1_43_18 Curated this version (complete)
RIFCSPLOWO2_01_FULL_OD1_43_160_rifcsplowo2_01_scaffold_1476_16
GWF2_OD1_41_8_partial, Jorgensenbacteria, Parcubacteria, Bacteria

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comp(9809..10129)
-----------------
DNA (321bp)
protein (107aa)
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA010-E09 RepID=UPI00035E0E9A
Histidine triad (HIT) protein {ECO:0000313|EMBL:KKS23478.1}; TaxID=1618667 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Jorgensenbacteria) bacterium GW2011_GWF2_41_8.;"
histidine triad (HIT) protein
RIFCSPLOWO2_01_FULL_OD1_43_160_rifcsplowo2_01_scaffold_1476_17
GWC2_OD1_43_8, Giovannonibacteria, Parcubacteria, Bacteria

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comp(10131..11471)
-----------------
DNA (1341bp)
protein (447aa)
histidyl-tRNA synthetase (EC:6.1.1.21)
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA010-E09 RepID=UPI00036B65C8
Histidine-tRNA ligase {ECO:0000313|EMBL:KKT21894.1}; TaxID=1618656 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWC2_43_8.;"
RIFCSPLOWO2_01_FULL_OD1_43_160_rifcsplowo2_01_scaffold_1476_18

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comp(11474..12013)
-----------------
DNA (540bp)
protein (180aa)
signal peptidase I (EC:3.4.21.89); K03100 signal peptidase I [EC:3.4.21.89] id=5803493 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
signal peptidase I (EC:3.4.21.89)
Signal peptidase I {ECO:0000313|EMBL:KKS96803.1}; TaxID=1618651 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWB1_43_13.;"
RIFCSPLOWO2_01_FULL_OD1_43_160_rifcsplowo2_01_scaffold_1476_19
GWA1_OD1_43_15, Giovannonibacteria, Parcubacteria, Bacteria

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12025..12594
-----------------
DNA (570bp)
protein (190aa)
Aminoacyl-tRNA hydrolase (EC:3.1.1.29); K01056 peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29] id=5803533 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
Peptidyl-tRNA hydrolase Tax=GWA1_OD1_43_15
peptidyl-tRNA hydrolase
RIFCSPLOWO2_01_FULL_OD1_43_160_rifcsplowo2_01_scaffold_1476_20
GWA1_OD1_43_15, Giovannonibacteria, Parcubacteria, Bacteria

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12904..14820
-----------------
DNA (1917bp)
protein (639aa)
Transcription-repair coupling factor Tax=GWA1_OD1_43_15
Transcription-repair coupling factor id=2824521 bin=GWC1_OD1_38_17 species=PER_GWF2_33_10 genus=PER_GWF2_33_10 taxon_order=PER_GWF2_33_10 taxon_class=PER_GWF2_33_10 phylum=PER tax=GWC1_OD1_38_17 organism_group=OD1 (Parcubacteria) organism_desc=Good + Candidate for curation
transcription-repair coupling factor
RIFCSPLOWO2_01_FULL_OD1_43_160_rifcsplowo2_01_scaffold_1476_21

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14870..15529
-----------------
DNA (660bp)
protein (220aa)
Uncharacterized protein {ECO:0000313|EMBL:KKT63776.1}; TaxID=1618648 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWA2_44_26.;"
RIFCSPLOWO2_01_FULL_OD1_43_160_rifcsplowo2_01_scaffold_1476_22

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15673..16476
-----------------
DNA (804bp)
protein (268aa)
Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family (EC:3.1.3.25)
Inositol monophosphatase family protein n=1 Tax=Clostridium hathewayi DSM 13479 RepID=D3AKC5_9CLOT
Inositol-1-monophosphatase {ECO:0000313|EMBL:KKT63775.1}; TaxID=1618648 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWA2_44_26.;"
RIFCSPLOWO2_01_FULL_OD1_43_160_rifcsplowo2_01_scaffold_1476_23
GWA1_OD1_43_15, Giovannonibacteria, Parcubacteria, Bacteria

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comp(16514..17665)
-----------------
DNA (1152bp)
protein (384aa)
RNA binding S1 domain protein Tax=GWA1_OD1_43_15
RNA binding S1 domain protein id=2933970 bin=GWC1_OD1_38_17 species=candidate division TM7 single-cell isolate TM7c genus=unknown taxon_order=unknown taxon_class=unknown phylum=Candidatus Saccharibacteria tax=GWC1_OD1_38_17 organism_group=OD1 (Parcubacteria) organism_desc=Good + Candidate for curation
rpfA; 30S ribosomal protein S1
RIFCSPLOWO2_01_FULL_OD1_43_160_rifcsplowo2_01_scaffold_1476_24
GWA1_OD1_43_15, Giovannonibacteria, Parcubacteria, Bacteria

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17703..18356
-----------------
DNA (654bp)
protein (218aa)
Zn-dependent hydrolase of the beta-lactamase fold-like protein Tax=GWA1_OD1_43_15
Zn-dependent hydrolase of the beta-lactamase fold-like protein id=2934030 bin=GWC1_OD1_38_17 species=GW2011_OD1_1 genus=GW2011_OD1_1 taxon_order=GW2011_OD1_1 taxon_class=GW2011_OD1_1 phylum=OD1 tax=GWC1_OD1_38_17 organism_group=OD1 (Parcubacteria) organism_desc=Good + Candidate for curation
Zn-dependent hydrolase of the beta-lactamase fold-like protein
RIFCSPLOWO2_01_FULL_OD1_43_160_rifcsplowo2_01_scaffold_1476_25

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18568..20580
-----------------
DNA (2013bp)
protein (671aa)
DNA ligase, NAD-dependent (EC:6.5.1.2)
Ligase protein {ECO:0000313|EMBL:KKT63772.1}; TaxID=1618648 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWA2_44_26.;"
DNA ligase id=3594477 bin=GWA1_ZB2_49_26 species=ACD58_39_12 genus=ACD58_39_12 taxon_order=ACD58_39_12 taxon_class=ACD58_39_12 phylum=ACD58 tax=GWA1_ZB2_49_26 organism_group=ZB2 organism_desc=Good
RIFCSPLOWO2_01_FULL_OD1_43_160_rifcsplowo2_01_scaffold_1476_26
GWC2_OD1_43_8, Giovannonibacteria, Parcubacteria, Bacteria

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20586..21212
-----------------
DNA (627bp)
protein (209aa)
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA011-N16 RepID=UPI0003B3ED16
Uncharacterized protein {ECO:0000313|EMBL:KKT20780.1}; TaxID=1618656 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWC2_43_8.;"
beta-lactamase
RIFCSPLOWO2_01_FULL_OD1_43_160_rifcsplowo2_01_scaffold_1476_27
GWC2_OD1_43_8, Giovannonibacteria, Parcubacteria, Bacteria

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21236..21517
-----------------
DNA (282bp)
protein (94aa)
glutamyl-tRNA(Gln) amidotransferase subunit C; K02435 aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7] id=8399 bin=ACD15 species=ACD15 genus=ACD15 taxon_order=ACD15 taxon_class=ACD15 phylum=OD1-i tax=ACD15 organism_group=OD1-i organism_desc=OD1-i
gatC; glutamyl-tRNA amidotransferase subunit C (EC:6.3.5.7)
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C {ECO:0000313|EMBL:KKT20781.1}; TaxID=1618656 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_
RIFCSPLOWO2_01_FULL_OD1_43_160_rifcsplowo2_01_scaffold_1476_28
GWC2_OD1_43_8, Giovannonibacteria, Parcubacteria, Bacteria

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21514..22911
-----------------
DNA (1398bp)
protein (466aa)
gatA; glutamyl-tRNA amidotransferase (EC:6.3.5.-)
Glutamyl-tRNA(Gln) amidotransferase subunit A {ECO:0000313|EMBL:KKT20782.1}; TaxID=1618656 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWC2_43_8.;"
Glutamyl-tRNA(Gln) amidotransferase subunit A id=2648831 bin=GWC1_OD1_38_17 species=ACD81 genus=ACD81 taxon_order=ACD81 taxon_class=ACD81 phylum=OD1 tax=GWC1_OD1_38_17 organism_group=OD1 (Parcubacteria) organism_desc=Good + Candidate for curation
RIFCSPLOWO2_01_FULL_OD1_43_160_rifcsplowo2_01_scaffold_1476_29

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22904..23440
-----------------
DNA (537bp)
protein (179aa)
Uncharacterized protein {ECO:0000313|EMBL:KKT63768.1}; TaxID=1618648 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWA2_44_26.;"
Putative uncharacterized protein id=1968393 bin=GWE2_OD1_40_11 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWE2_OD1_40_11 organism_group=OD1 (Parcubacteria)
RIFCSPLOWO2_01_FULL_OD1_43_160_rifcsplowo2_01_scaffold_1476_30
R_OD1_Giovannonibacteria_44_11, Giovannonibacteria, Parcubacteria, Bacteria

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comp(23625..23825)
-----------------
DNA (201bp)
protein (67aa)
Probable cold shock protein scoF n=1 Tax=Blastopirellula marina DSM 3645 RepID=A3ZQQ8_9PLAN id=120539 bin=ACD76 species=Blastopirellula marina genus=Blastopirellula taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=ACD76 organism_group=OD1 (Parcubacteria) organism_desc=OD1
cold shock protein Tax=RIFCSPHIGHO2_02_FULL_OD1_Giovannonibacteria_44_11_curated
hypothetical protein
Displaying items 1-30 of 93 in total

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