ggKbase home page

RIFCSPLOWO2_01_FULL_OD1_47_79_rifcsplowo2_01_scaffold_2658

Search features with annotation key words

Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPLOWO2_01_FULL_OD1_47_79_rifcsplowo2_01_scaffold_2658_1
Parcubacteria bacterium GW2011_GWA1_47_9, Parcubacteria, Bacteria

Not on your lists

1..669
-----------------
DNA (669bp)
protein (223aa)
Uncharacterized protein {ECO:0000313|EMBL:KKU86137.1}; TaxID=1618794 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA1_47_9.;"
RIFCSPLOWO2_01_FULL_OD1_47_79_rifcsplowo2_01_scaffold_2658_2
GWA2_OD1_47_10b, Parcubacteria, Bacteria

Not on your lists

672..1922
-----------------
DNA (1251bp)
protein (417aa)
Uncharacterized protein {ECO:0000313|EMBL:KKU53221.1}; TaxID=1618840 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA2_47_10b.;"
RIFCSPLOWO2_01_FULL_OD1_47_79_rifcsplowo2_01_scaffold_2658_3
GWA2_OD1_47_10b, Parcubacteria, Bacteria

Not on your lists

comp(1894..2379)
-----------------
DNA (486bp)
protein (162aa)
R3H domain-containing protein {ECO:0000313|EMBL:KKU53220.1}; TaxID=1618840 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA2_47_10b.;"
R3H domain protein id=1968368 bin=GWE2_OD1_40_11 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWE2_OD1_40_11 organism_group=OD1 (Parcubacteria)
single-stranded nucleic acid-binding R3H domain-containing protein
RIFCSPLOWO2_01_FULL_OD1_47_79_rifcsplowo2_01_scaffold_2658_4
GWA2_OD1_47_10b, Parcubacteria, Bacteria

Not on your lists

comp(2351..3094)
-----------------
DNA (744bp)
protein (248aa)
Membrane protein insertase, YidC/Oxa1 family Tax=GWA2_OD1_47_10b
Stage III sporulation protein J id=1826478 bin=GWE2_OD1_46_68 species=GWE2_OD1_46_68 genus=GWE2_OD1_46_68 taxon_order=GWE2_OD1_46_68 taxon_class=GWE2_OD1_46_68 phylum=OD1 tax=GWE2_OD1_46_68 organism_group=OD1 (Parcubacteria)
preprotein translocase subunit YidC
RIFCSPLOWO2_01_FULL_OD1_47_79_rifcsplowo2_01_scaffold_2658_5
GWA2_OD1_47_10b, Parcubacteria, Bacteria

Not on your lists

comp(3075..3404)
-----------------
DNA (330bp)
protein (110aa)
hypothetical protein n=1 Tax=Fervidibacteria bacterium JGI 0000001-G10 RepID=UPI0003814656
Ribonuclease P protein component Tax=GWA2_OD1_47_10b
RIFCSPLOWO2_01_FULL_OD1_47_79_rifcsplowo2_01_scaffold_2658_6
GWA2_OD1_47_10b, Parcubacteria, Bacteria

Not on your lists

3681..5045
-----------------
DNA (1365bp)
protein (455aa)
hypothetical protein n=1 Tax=Candidatus Paceibacter normanii SCGC AAA255-P19 RepID=UPI00037E6C2A
Chromosomal replication initiator protein DnaA {ECO:0000313|EMBL:KKU53217.1}; TaxID=1618840 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA2_47_10b.;"
chromosomal replication initiation protein
RIFCSPLOWO2_01_FULL_OD1_47_79_rifcsplowo2_01_scaffold_2658_7
GWA2_OD1_47_10b, Parcubacteria, Bacteria

Not on your lists

5214..6329
-----------------
DNA (1116bp)
protein (372aa)
DNA polymerase III subunit beta (EC:2.7.7.7)
DNA polymerase III subunit beta Tax=GWA2_OD1_47_10b
DNA polymerase III subunit beta id=2934338 bin=GWC1_OD1_38_17 species=GWE2_OD1_38_254 genus=GWE2_OD1_38_254 taxon_order=GWE2_OD1_38_254 taxon_class=GWE2_OD1_38_254 phylum=OD1 tax=GWC1_OD1_38_17 organism_group=OD1 (Parcubacteria) organism_desc=Good + Candidate for curation
RIFCSPLOWO2_01_FULL_OD1_47_79_rifcsplowo2_01_scaffold_2658_8
unknown

Not on your lists

6326..6622
-----------------
DNA (297bp)
protein (99aa)

This feature has no annotations

RIFCSPLOWO2_01_FULL_OD1_47_79_rifcsplowo2_01_scaffold_2658_9
Parcubacteria bacterium GW2011_GWA1_47_9, Parcubacteria, Bacteria

Not on your lists

comp(6603..9068)
-----------------
DNA (2466bp)
protein (822aa)
Penicillin-binding protein, 1A family {ECO:0000313|EMBL:KKU86130.1}; TaxID=1618794 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA1_47_9.;"
putative penicillin-binding protein id=5803206 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
hypothetical protein
RIFCSPLOWO2_01_FULL_OD1_47_79_rifcsplowo2_01_scaffold_2658_10
GWA2_OD1_47_10b, Parcubacteria, Bacteria

Not on your lists

comp(9135..9272)
-----------------
DNA (138bp)
protein (46aa)
Zinc metalloprotease Tax=GWA2_OD1_47_10b
RIFCSPLOWO2_01_FULL_OD1_47_79_rifcsplowo2_01_scaffold_2658_11
GWA2_OD1_47_10b, Parcubacteria, Bacteria

Not on your lists

comp(9376..9849)
-----------------
DNA (474bp)
protein (158aa)
crossover junction endodeoxyribonuclease RuvC (EC:3.1.22.4)
Crossover junction endodeoxyribonuclease RuvC n=1 Tax=uncultured bacterium RepID=K1ZPY1_9BACT
Crossover junction endodeoxyribonuclease RuvC Tax=GWA2_OD1_47_10b
RIFCSPLOWO2_01_FULL_OD1_47_79_rifcsplowo2_01_scaffold_2658_12
GWA2_OD1_47_10b, Parcubacteria, Bacteria

Not on your lists

comp(9846..10394)
-----------------
DNA (549bp)
protein (183aa)
Transcriptional regulator {ECO:0000313|EMBL:KKU53212.1}; TaxID=1618840 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA2_47_10b.;"
Probable transcriptional regulatory protein Despr_0673 id=3336322 bin=GWA2_OP3_53_43 species=Desulfobulbus propionicus genus=Desulfobulbus taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_OP3_53_43 organism_group=OP3 (Omnitrophica) organism_desc=Was designated as curated version. Not curated. rp block places as OP3
hypothetical protein
RIFCSPLOWO2_01_FULL_OD1_47_79_rifcsplowo2_01_scaffold_2658_13
GWA2_OD1_47_10b, Parcubacteria, Bacteria

Not on your lists

comp(10408..11409)
-----------------
DNA (1002bp)
protein (334aa)
Holliday junction ATP-dependent DNA helicase RuvB Tax=GWA2_OD1_47_10b
id=5227412 bin=RAAC4_OD1 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=RAAC4_OD1 organism_group=OD1 (Parcubacteria)
Holliday junction DNA helicase RuvB
RIFCSPLOWO2_01_FULL_OD1_47_79_rifcsplowo2_01_scaffold_2658_14
GWA2_OD1_47_10b, Parcubacteria, Bacteria

Not on your lists

comp(11709..12344)
-----------------
DNA (636bp)
protein (212aa)
Putative uncharacterized protein n=1 Tax=uncultured SUP05 cluster bacterium RepID=D0U4B2_9GAMM id=130478 bin=ACD7 species=uncultured SUP05 cluster bacterium genus=unknown taxon_order=Oceanospirillales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=ACD7 organism_group=OD1-i organism_desc=OD1-i
Transposase Tax=GWA2_OD1_47_10b
hypothetical protein
RIFCSPLOWO2_01_FULL_OD1_47_79_rifcsplowo2_01_scaffold_2658_15
Parcubacteria bacterium GW2011_GWA1_47_9, Parcubacteria, Bacteria

Not on your lists

12441..13298
-----------------
DNA (858bp)
protein (286aa)
Uncharacterized protein n=1 Tax=Haliangium ochraceum (strain DSM 14365 / JCM 11303 / SMP-2) RepID=D0LQM9_HALO1
ABC-type multidrug transport system, ATPase component {ECO:0000313|EMBL:KKU86124.1}; Flags: Fragment;; TaxID=1618794 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA1_47_
hypothetical protein
RIFCSPLOWO2_01_FULL_OD1_47_79_rifcsplowo2_01_scaffold_2658_16
R_OD1_Giovannonibacteria_46_32, Giovannonibacteria, Parcubacteria, Bacteria

Not on your lists

comp(13356..15023)
-----------------
DNA (1668bp)
protein (556aa)
gspE; general secretion pathway protein F; K02454 general secretion pathway protein E Tax=RIFCSPLOWO2_01_FULL_OD1_Giovannonibacteria_46_32_curated
pilB1; type IV-A pilus assembly ATPase PilB; K02652 type IV pilus assembly protein PilB id=5803215 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
PulE; type II secretory pathway, ATPase PulE/tfp pilus assembly pathway, ATPase PilB
RIFCSPLOWO2_01_FULL_OD1_47_79_rifcsplowo2_01_scaffold_2658_17
GWA2_OD1_47_10b, Parcubacteria, Bacteria

Not on your lists

comp(15064..15903)
-----------------
DNA (840bp)
protein (280aa)
hypothetical protein Tax=GWA2_OD1_47_10b
RIFCSPLOWO2_01_FULL_OD1_47_79_rifcsplowo2_01_scaffold_2658_18
GWA2_OD1_47_10b, Parcubacteria, Bacteria

Not on your lists

16041..16664
-----------------
DNA (624bp)
protein (208aa)
Uncharacterized protein n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4RDB5_PHEZH
Putative uncharacterized protein Tax=GWA2_OD1_47_10b
hypothetical protein
RIFCSPLOWO2_01_FULL_OD1_47_79_rifcsplowo2_01_scaffold_2658_19
Parcubacteria bacterium GW2011_GWA1_47_9, Parcubacteria, Bacteria

Not on your lists

16763..17227
-----------------
DNA (465bp)
protein (155aa)
hypothetical protein n=1 Tax=Candidatus Paceibacter normanii SCGC AAA255-P19 RepID=UPI0003737F3B
Putative ATPase or kinase {ECO:0000313|EMBL:KKU85758.1}; TaxID=1618794 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA1_47_9.;"
hypothetical protein
RIFCSPLOWO2_01_FULL_OD1_47_79_rifcsplowo2_01_scaffold_2658_20
GWA2_OD1_47_10b, Parcubacteria, Bacteria

Not on your lists

17217..19790
-----------------
DNA (2574bp)
protein (858aa)
DNA polymerase Tax=GWA2_OD1_47_10b
DNA polymerase id=2185743 bin=GWE2_OD1_40_11 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWE2_OD1_40_11 organism_group=OD1 (Parcubacteria)
DNA polymerase I
RIFCSPLOWO2_01_FULL_OD1_47_79_rifcsplowo2_01_scaffold_2658_21
Parcubacteria bacterium GW2011_GWA1_47_9, Parcubacteria, Bacteria

Not on your lists

19787..20941
-----------------
DNA (1155bp)
protein (385aa)
Integral membrane sensor signal transduction histidine kinase {ECO:0000313|EMBL:KKU85760.1}; TaxID=1618794 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA1_47_9.;"
Sensor protein resE id=2720430 bin=GWA1_ZB2_49_26 species=ACD41 genus=ACD41 taxon_order=ACD41 taxon_class=ACD41 phylum=OD1 tax=GWA1_ZB2_49_26 organism_group=ZB2 organism_desc=Good
integral membrane sensor signal transduction histidine kinase
RIFCSPLOWO2_01_FULL_OD1_47_79_rifcsplowo2_01_scaffold_2658_22
GWA2_OD1_47_10b, Parcubacteria, Bacteria

Not on your lists

20960..21403
-----------------
DNA (444bp)
protein (148aa)
Two component transcriptional regulator, winged helix family Tax=GWA2_OD1_47_10b
Response regulator receiver protein id=2934194 bin=GWC1_OD1_38_17 species=Desulfovibrio aespoeensis genus=Desulfovibrio taxon_order=Desulfovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC1_OD1_38_17 organism_group=OD1 (Parcubacteria) organism_desc=Good + Candidate for curation
two component transcriptional regulator, winged helix family
RIFCSPLOWO2_01_FULL_OD1_47_79_rifcsplowo2_01_scaffold_2658_23
GWA2_OD1_47_10b, Parcubacteria, Bacteria

Not on your lists

21400..22272
-----------------
DNA (873bp)
protein (291aa)
hypothetical protein Tax=GWA2_OD1_47_10b
RIFCSPLOWO2_01_FULL_OD1_47_79_rifcsplowo2_01_scaffold_2658_24
GWA2_OD1_47_10b, Parcubacteria, Bacteria

Not on your lists

22282..24315
-----------------
DNA (2034bp)
protein (678aa)
Putative uncharacterized protein n=1 Tax=Geobacter sp. M18 RepID=C6MR77_9DELT id=120058 bin=ACD76 species=Geobacter sp. M18 genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=ACD76 organism_group=OD1 (Parcubacteria) organism_desc=OD1
Putative uncharacterized protein Tax=GWA2_OD1_47_10b
hypothetical protein
RIFCSPLOWO2_01_FULL_OD1_47_79_rifcsplowo2_01_scaffold_2658_25
GWA2_OD1_47_10b, Parcubacteria, Bacteria

Not on your lists


comp(24312..24578)
-----------------
DNA (267bp)
protein (89aa)
hypothetical protein n=1 Tax=Candidatus Paceibacter normanii SCGC AAA255-P19 RepID=UPI000371EFDE
30S ribosomal protein S20 Tax=GWA2_OD1_47_10b
rpsT; ribosomal protein S20
RIFCSPLOWO2_01_FULL_OD1_47_79_rifcsplowo2_01_scaffold_2658_26
Parcubacteria bacterium GW2011_GWA1_47_9, Parcubacteria, Bacteria

Not on your lists

comp(25294..25548)
-----------------
DNA (255bp)
protein (85aa)
Addiction module toxin, RelE/StbE family {ECO:0000313|EMBL:KKU85765.1}; TaxID=1618794 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA1_47_9.;"
RIFCSPLOWO2_01_FULL_OD1_47_79_rifcsplowo2_01_scaffold_2658_27
Parcubacteria bacterium GW2011_GWA1_47_9, Parcubacteria, Bacteria

Not on your lists

comp(25693..27618)
-----------------
DNA (1926bp)
protein (642aa)
excinuclease ABC subunit B n=1 Tax=Bacillus sp. ZYK RepID=UPI0002DB8230
UvrABC system protein B {ECO:0000313|EMBL:KKU85766.1}; TaxID=1618794 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA1_47_9.;"
uvrB; excinuclease ABC subunit B
RIFCSPLOWO2_01_FULL_OD1_47_79_rifcsplowo2_01_scaffold_2658_28
unknown

Not on your lists

comp(27677..27835)
-----------------
DNA (159bp)
protein (53aa)

This feature has no annotations

Displaying 28 items

View Taxonomy