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RIFCSPLOWO2_02_FULL_Acidobacteria_64_15_rifcsplowo2_02_scaffold_5254

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Displaying items 1-30 of 74 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPLOWO2_02_FULL_Acidobacteria_64_15_rifcsplowo2_02_scaffold_5254_1
Polaromonas sp. JS666, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..1226)
-----------------
DNA (1224bp)
protein (408aa)
catalase/peroxidase HPI (EC:1.11.1.6)
Catalase-peroxidase {ECO:0000255|HAMAP-Rule:MF_01961}; Short=CP {ECO:0000255|HAMAP-Rule:MF_01961};; EC=1.11.1.21 {ECO:0000255|HAMAP-Rule:MF_01961};; Peroxidase/catalase {ECO:0000255|HAMAP-Rule:MF_0196
Catalase-peroxidase n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=KATG_POLSJ
RIFCSPLOWO2_02_FULL_Acidobacteria_64_15_rifcsplowo2_02_scaffold_5254_2
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

1396..1833
-----------------
DNA (438bp)
protein (146aa)
Ferric uptake regulator, Fur family n=1 Tax=Kyrpidia tusciae (strain DSM 2912 / NBRC 15312 / T2) RepID=D5WQK5_KYRT2
Fur family ferric uptake regulator; K09825 Fur family transcriptional regulator, peroxide stress response regulator Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
Fur family ferric uptake regulator
RIFCSPLOWO2_02_FULL_Acidobacteria_64_15_rifcsplowo2_02_scaffold_5254_3
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

2177..2422
-----------------
DNA (246bp)
protein (82aa)
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
RIFCSPLOWO2_02_FULL_Acidobacteria_64_15_rifcsplowo2_02_scaffold_5254_4
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

2742..3077
-----------------
DNA (336bp)
protein (112aa)
hypothetical protein n=1 Tax=Citromicrobium sp. JLT1363 RepID=UPI000225DF68
transcriptional regulator, TraR/DksA family Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
dskA; DnaK suppressor protein homolog
RIFCSPLOWO2_02_FULL_Acidobacteria_64_15_rifcsplowo2_02_scaffold_5254_5
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

3077..3508
-----------------
DNA (432bp)
protein (144aa)
hypothetical protein n=1 Tax=Microbulbifer agarilyticus RepID=UPI000255B8F2
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
hypothetical protein
RIFCSPLOWO2_02_FULL_Acidobacteria_64_15_rifcsplowo2_02_scaffold_5254_6
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

3661..4797
-----------------
DNA (1137bp)
protein (379aa)
Uncharacterized conserved protein n=1 Tax=uncultured Oceanospirillales bacterium HF4000_23O15 RepID=E0XW08_9GAMM
NHL repeat-containing protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
NHL repeat-containing protein
RIFCSPLOWO2_02_FULL_Acidobacteria_64_15_rifcsplowo2_02_scaffold_5254_7
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(4757..9121)
-----------------
DNA (4365bp)
protein (1455aa)
ATP dependent helicase; K03724 ATP-dependent helicase Lhr and Lhr-like helicase [EC:3.6.4.-] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
ATP dependent helicase, Lhr family n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01U88_SOLUE
ATP dependent helicase
RIFCSPLOWO2_02_FULL_Acidobacteria_64_15_rifcsplowo2_02_scaffold_5254_8
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

9287..10048
-----------------
DNA (762bp)
protein (254aa)
Rhomboid family protein n=1 Tax=Anaeromyxobacter sp. (strain Fw109-5) RepID=A7HAN7_ANADF
rhomboid family protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
rhomboid family protein
RIFCSPLOWO2_02_FULL_Acidobacteria_64_15_rifcsplowo2_02_scaffold_5254_9
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

10117..10752
-----------------
DNA (636bp)
protein (212aa)
regulatory protein TetR Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
TetR family transcriptional regulator id=12555441 bin=CNBR_ACIDO species=Desulfobacter curvatus genus=Desulfobacter taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
regulatory protein TetR
RIFCSPLOWO2_02_FULL_Acidobacteria_64_15_rifcsplowo2_02_scaffold_5254_10
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

10841..11842
-----------------
DNA (1002bp)
protein (334aa)
secretion protein HlyD family protein; K01993 HlyD family secretion protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
secretion protein HlyD family protein; K01993 HlyD family secretion protein id=12555440 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
secretion protein HlyD family protein
RIFCSPLOWO2_02_FULL_Acidobacteria_64_15_rifcsplowo2_02_scaffold_5254_11
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

11839..12591
-----------------
DNA (753bp)
protein (251aa)
sulfate-transporting ATPase (EC:3.6.3.25) Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
sulfate-transporting ATPase (EC:3.6.3.25)
Sulfate-transporting ATPase n=1 Tax=Rhodothermus marinus SG0.5JP17-172 RepID=G2SGF2_RHOMR
RIFCSPLOWO2_02_FULL_Acidobacteria_64_15_rifcsplowo2_02_scaffold_5254_12
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

12588..13910
-----------------
DNA (1323bp)
protein (441aa)
outer membrane efflux protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
outer membrane efflux protein id=12555437 bin=CNBR_ACIDO species=Polaromonas naphthalenivorans genus=Polaromonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
outer membrane efflux protein
RIFCSPLOWO2_02_FULL_Acidobacteria_64_15_rifcsplowo2_02_scaffold_5254_13
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

13991..14926
-----------------
DNA (936bp)
protein (312aa)
ABC transporter-like protein; K01990 ABC-2 type transport system ATP-binding protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
ABC transporter-like protein; K01990 ABC-2 type transport system ATP-binding protein id=12555436 bin=CNBR_ACIDO species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
ybhF-C1; ABC transporter ATP-binding protein
RIFCSPLOWO2_02_FULL_Acidobacteria_64_15_rifcsplowo2_02_scaffold_5254_14
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

14923..16050
-----------------
DNA (1128bp)
protein (376aa)
ABC transporter; K09686 antibiotic transport system permease protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
ABC transporter; K09686 antibiotic transport system permease protein id=12555435 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
ABC transporter
RIFCSPLOWO2_02_FULL_Acidobacteria_64_15_rifcsplowo2_02_scaffold_5254_15
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

16076..17170
-----------------
DNA (1095bp)
protein (365aa)
ABC transporter; K09686 antibiotic transport system permease protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
export ABC transporter permease id=12555434 bin=CNBR_ACIDO species=TA06 genus=TA06 taxon_order=TA06 taxon_class=TA06 phylum=TA06 tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
ABC transporter
RIFCSPLOWO2_02_FULL_Acidobacteria_64_15_rifcsplowo2_02_scaffold_5254_16
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(17176..18750)
-----------------
DNA (1575bp)
protein (525aa)
hypothetical protein n=1 Tax=Methylotenera RepID=UPI000379A244
beta-lactamase domain-containing protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
beta-lactamase domain-containing protein
RIFCSPLOWO2_02_FULL_Acidobacteria_64_15_rifcsplowo2_02_scaffold_5254_17
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(18783..20408)
-----------------
DNA (1626bp)
protein (542aa)
tannase and feruloyl esterase; K09252 feruloyl esterase [EC:3.1.1.73] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 89 RepID=UPI00035CCE04
tannase and feruloyl esterase
RIFCSPLOWO2_02_FULL_Acidobacteria_64_15_rifcsplowo2_02_scaffold_5254_18
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

20466..21740
-----------------
DNA (1275bp)
protein (425aa)
putative oxidoreductase; K07007 Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
hypothetical protein; K07007 id=12556406 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
putative oxidoreductase
RIFCSPLOWO2_02_FULL_Acidobacteria_64_15_rifcsplowo2_02_scaffold_5254_19
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(21751..21969)
-----------------
DNA (219bp)
protein (73aa)
id=12554824 Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
id=12554824 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
RIFCSPLOWO2_02_FULL_Acidobacteria_64_15_rifcsplowo2_02_scaffold_5254_20
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(22000..22479)
-----------------
DNA (480bp)
protein (160aa)
RNP-1 like RNA-binding protein Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
rnp-1 like RNA-binding protein id=12554817 bin=CNBR_ACIDO species=Limnohabitans sp. Rim28 genus=Limnohabitans taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
RNP-1 like RNA-binding protein
RIFCSPLOWO2_02_FULL_Acidobacteria_64_15_rifcsplowo2_02_scaffold_5254_21
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

22684..23919
-----------------
DNA (1236bp)
protein (412aa)
Uncharacterized protein conserved in bacteria n=1 Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LIZ9_CHLTF
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
alternate gene name: yzbB
RIFCSPLOWO2_02_FULL_Acidobacteria_64_15_rifcsplowo2_02_scaffold_5254_22
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(23938..24801)
-----------------
DNA (864bp)
protein (288aa)
Putative uncharacterized protein n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1II93_KORVE
hypothetical protein; K06966 Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
hypothetical protein
RIFCSPLOWO2_02_FULL_Acidobacteria_64_15_rifcsplowo2_02_scaffold_5254_23
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

24850..25329
-----------------
DNA (480bp)
protein (160aa)
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
RIFCSPLOWO2_02_FULL_Acidobacteria_64_15_rifcsplowo2_02_scaffold_5254_24
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(25399..26814)
-----------------
DNA (1416bp)
protein (472aa)
pyruvate kinase (EC:2.7.1.40); K00873 pyruvate kinase [EC:2.7.1.40] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
Pyruvate kinase n=1 Tax=Anaeromyxobacter sp. (strain Fw109-5) RepID=A7HIL5_ANADF
pyruvate kinase
RIFCSPLOWO2_02_FULL_Acidobacteria_64_15_rifcsplowo2_02_scaffold_5254_25
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

26947..27486
-----------------
DNA (540bp)
protein (180aa)
O-methyltransferase family protein n=1 Tax=uncultured candidate division OP1 bacterium RepID=H5SRI1_9BACT
O-methyltransferase family protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
O-methyltransferase family protein
RIFCSPLOWO2_02_FULL_Acidobacteria_64_15_rifcsplowo2_02_scaffold_5254_26
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

Not on your lists

27507..28832
-----------------
DNA (1326bp)
protein (442aa)
amidase; K02433 aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated
amidase; K02433 aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] id=12557552 bin=CNBR_ACIDO species=Deinococcus deserti genus=Deinococcus taxon_order=Deinococcales taxon_class=Deinococci phylum=Deinococcus-Thermus tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
amidase
RIFCSPLOWO2_02_FULL_Acidobacteria_64_15_rifcsplowo2_02_scaffold_5254_27
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(28855..29871)
-----------------
DNA (1017bp)
protein (339aa)
peptidase M20; K01438 acetylornithine deacetylase [EC:3.5.1.16] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
peptidase dimerization domain-containing protein; K01438 acetylornithine deacetylase [EC:3.5.1.16] id=12554321 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
peptidase M20
RIFCSPLOWO2_02_FULL_Acidobacteria_64_15_rifcsplowo2_02_scaffold_5254_28
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(29859..30704)
-----------------
DNA (846bp)
protein (282aa)
2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; K00674 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase [EC:2.3.1.117] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curat
2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase n=1 Tax=Acidobacteriaceae bacterium TAA166 RepID=UPI0003B5200B
2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase
RIFCSPLOWO2_02_FULL_Acidobacteria_64_15_rifcsplowo2_02_scaffold_5254_29
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(30713..31612)
-----------------
DNA (900bp)
protein (300aa)
dihydrodipicolinate synthase (EC:4.2.1.52); K01714 dihydrodipicolinate synthase [EC:4.2.1.52] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
dihydrodipicolinate synthase (EC:4.2.1.52); K01714 dihydrodipicolinate synthase [EC:4.2.1.52] id=12554320 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
dihydrodipicolinate synthase (EC:4.2.1.52)
RIFCSPLOWO2_02_FULL_Acidobacteria_64_15_rifcsplowo2_02_scaffold_5254_30
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(31664..32347)
-----------------
DNA (684bp)
protein (228aa)
dihydrodipicolinate reductase (EC:1.3.1.26); K00215 dihydrodipicolinate reductase [EC:1.3.1.26] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
dihydrodipicolinate reductase (EC:1.3.1.26); K00215 dihydrodipicolinate reductase [EC:1.3.1.26] id=12554319 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
dihydrodipicolinate reductase (EC:1.3.1.26)
Displaying items 1-30 of 74 in total

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