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RIFCSPLOWO2_02_FULL_CP_39_110_rifcsplowo2_02_scaffold_5714

Search features with annotation key words

Displaying items 1-30 of 32 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPLOWO2_02_FULL_CP_39_110_rifcsplowo2_02_scaffold_5714_1
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

comp(3..1163)
DNA (1161bp) protein (387aa)
gcvPB; glycine dehydrogenase [decarboxylating] subunit 2 (Glycine decarboxylase subunit 2) (Glycine cleavage system P-protein subunit 2) (EC:1.4.4.2) Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
gcvPB; glycine dehydrogenase [decarboxylating] subunit 2 (Glycine decarboxylase subunit 2) (Glycine cleavage system P-protein subunit 2) (EC:1.4.4.2)
Probable glycine dehydrogenase (decarboxylating) subunit 2 n=1 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MLB1_9BACT
RIFCSPLOWO2_02_FULL_CP_39_110_rifcsplowo2_02_scaffold_5714_2
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

comp(1339..2688)
DNA (1350bp) protein (450aa)
gcvPA; glycine dehydrogenase [decarboxylating] subunit 1 (Glycine decarboxylase subunit 1) (Glycine cleavage system P-protein subunit 1) (EC:1.4.4.2) Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
gcvPA; glycine dehydrogenase [decarboxylating] subunit 1 (Glycine decarboxylase subunit 1) (Glycine cleavage system P-protein subunit 1) (EC:1.4.4.2)
Probable glycine dehydrogenase [decarboxylating] subunit 1 n=1 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MLB0_9BACT
RIFCSPLOWO2_02_FULL_CP_39_110_rifcsplowo2_02_scaffold_5714_3
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

comp(2767..3156)
DNA (390bp) protein (130aa)
glycine cleavage system protein H n=1 Tax=Oceanobacillus kimchii RepID=UPI00034B735A
glycine cleavage system protein H; K02437 glycine cleavage system H protein Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
glycine cleavage system protein H
RIFCSPLOWO2_02_FULL_CP_39_110_rifcsplowo2_02_scaffold_5714_4
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

comp(3198..4319)
DNA (1122bp) protein (374aa)
glycine cleavage system T protein Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
Aminomethyltransferase id=4920915 bin=GWC2_Deltaproteobacteria_42_51 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Deltaproteobacteria_42_51 organism_group=Deltaproteobacteria
glycine cleavage system T protein
RIFCSPLOWO2_02_FULL_CP_39_110_rifcsplowo2_02_scaffold_5714_5
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

comp(4389..5120)
DNA (732bp) protein (244aa)
pyridoxal phosphate biosynthetic protein PdxJ (EC:2.6.99.2); K03474 pyridoxine 5-phosphate synthase [EC:2.6.99.2] Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
pyridoxal phosphate biosynthetic protein PdxJ (EC:2.6.99.2)
metalloprotease n=1 Tax=Thermodesulfatator atlanticus RepID=UPI0003B62B87
RIFCSPLOWO2_02_FULL_CP_39_110_rifcsplowo2_02_scaffold_5714_trna_1
unknown

Not on your lists

5209..5281
DNA (73bp)
transferRNA
RIFCSPLOWO2_02_FULL_CP_39_110_rifcsplowo2_02_scaffold_5714_trna_2
unknown

Not on your lists

5368..5439
DNA (72bp)
transferRNA
RIFCSPLOWO2_02_FULL_CP_39_110_rifcsplowo2_02_scaffold_5714_6
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

5507..7237
DNA (1731bp) protein (577aa)
thrS; threonyl-tRNA synthetase (EC:6.1.1.3); K01868 threonyl-tRNA synthetase [EC:6.1.1.3] Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
thrS; threonyl-tRNA synthetase (EC:6.1.1.3)
Threonine--tRNA ligase id=2154342 bin=GWB2_Nitrospirae_rel_47_37 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWB2_Nitrospirae_rel_47_37 organism_group=Nitrospirae organism_desc=Good + (but may not be Nitrospirae phylum)
RIFCSPLOWO2_02_FULL_CP_39_110_rifcsplowo2_02_scaffold_5714_7
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

7340..7822
DNA (483bp) protein (161aa)
Translation initiation factor IF-3 n=1 Tax=Nitrospina gracilis 3/211 RepID=M1ZA26_9BACT
translation initiation factor IF-3; K02520 translation initiation factor IF-3 Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
translation initiation factor IF-3
RIFCSPLOWO2_02_FULL_CP_39_110_rifcsplowo2_02_scaffold_5714_8
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists


7917..8108
DNA (192bp) protein (64aa)
50S ribosomal protein L35 n=2 Tax=Spirochaeta thermophila RepID=E0RRU4_SPITD
50S ribosomal protein L35; K02916 large subunit ribosomal protein L35 Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
rpmI; 50S ribosomal protein L35
RIFCSPLOWO2_02_FULL_CP_39_110_rifcsplowo2_02_scaffold_5714_9
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists


8191..8547
DNA (357bp) protein (119aa)
50S ribosomal protein L20 n=1 Tax=Thermodesulfobacterium geofontis (strain OPB45) RepID=F8C4E4_THEGP
50S ribosomal protein L20; K02887 large subunit ribosomal protein L20 Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
50S ribosomal protein L20
RIFCSPLOWO2_02_FULL_CP_39_110_rifcsplowo2_02_scaffold_5714_10
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

8590..9555
DNA (966bp) protein (322aa)
sdhB; succinate dehydrogenase/fumarate reductase Fe-s protein subunit (EC:1.3.99.1); K00240 succinate dehydrogenase iron-sulfur subunit [EC:1.3.99.1] Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
sdhB; succinate dehydrogenase/fumarate reductase Fe-s protein subunit (EC:1.3.99.1)
hypothetical protein n=1 Tax=Nitrospina sp. AB-629-B18 RepID=UPI000366913D
RIFCSPLOWO2_02_FULL_CP_39_110_rifcsplowo2_02_scaffold_5714_11
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

9686..10549
DNA (864bp) protein (288aa)
sdhE; succinate dehydrogenase subunit C (EC:1.3.99.1); K03389 heterodisulfide reductase subunit B [EC:1.8.98.1] Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
sdhE; succinate dehydrogenase subunit C (EC:1.3.99.1)
hypothetical protein n=1 Tax=Nitrospina sp. AB-629-B18 RepID=UPI00038236CA
RIFCSPLOWO2_02_FULL_CP_39_110_rifcsplowo2_02_scaffold_5714_12
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists


10688..11074
DNA (387bp) protein (129aa)
30S ribosomal protein S6 n=1 Tax=Nitrospina gracilis 3/211 RepID=M1Z1D4_9BACT
rpsF; 30S ribosomal protein S6; K02990 small subunit ribosomal protein S6 Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
rpsF; 30S ribosomal protein S6
RIFCSPLOWO2_02_FULL_CP_39_110_rifcsplowo2_02_scaffold_5714_13
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

11074..11484
DNA (411bp) protein (137aa)
Single-stranded DNA-binding protein n=1 Tax=Nitrospina gracilis 3/211 RepID=M1Z0R7_9BACT
ssb; single-stranded DNA-binding protein; K03111 single-strand DNA-binding protein Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
ssb; single-stranded DNA-binding protein
RIFCSPLOWO2_02_FULL_CP_39_110_rifcsplowo2_02_scaffold_5714_14
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists


11548..11802
DNA (255bp) protein (85aa)
30S ribosomal protein S18 n=1 Tax=Nitrospina gracilis 3/211 RepID=M1YLF4_9BACT
rpsR; 30S ribosomal protein S18; K02963 small subunit ribosomal protein S18 Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
rpsR; 30S ribosomal protein S18
RIFCSPLOWO2_02_FULL_CP_39_110_rifcsplowo2_02_scaffold_5714_15
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists


11867..12310
DNA (444bp) protein (148aa)
50S ribosomal protein L9 n=1 Tax=Thermoanaerobacterium thermosaccharolyticum M0795 RepID=L0INI4_THETR
ribosomal protein L9 Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
ribosomal protein L9
RIFCSPLOWO2_02_FULL_CP_39_110_rifcsplowo2_02_scaffold_5714_16
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

12343..13713
DNA (1371bp) protein (457aa)
replicative DNA helicase (EC:3.6.1.-); K02314 replicative DNA helicase [EC:3.6.4.12] Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
replicative DNA helicase (EC:3.6.1.-)
Replicative DNA helicase n=1 Tax=Syntrophus aciditrophicus (strain SB) RepID=Q2LUJ4_SYNAS
RIFCSPLOWO2_02_FULL_CP_39_110_rifcsplowo2_02_scaffold_5714_17
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

13710..14828
DNA (1119bp) protein (373aa)
alanine racemase (EC:5.1.1.1); K01775 alanine racemase [EC:5.1.1.1] Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
alanine racemase (EC:5.1.1.1)
Alanine racemase id=2088333 bin=GWB2_CP_45_9 species=Halothermothrix orenii genus=Halothermothrix taxon_order=Halanaerobiales taxon_class=Clostridia phylum=Firmicutes tax=GWB2_CP_45_9 organism_group=Unknown_CP organism_desc=Sibling to OP3 based on rpS3
RIFCSPLOWO2_02_FULL_CP_39_110_rifcsplowo2_02_scaffold_5714_18
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

14939..16567
DNA (1629bp) protein (543aa)
L-aspartate oxidase (EC:1.4.3.16); K00278 L-aspartate oxidase [EC:1.4.3.16] Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
hypothetical protein n=1 Tax=Nitrospina sp. AB-629-B18 RepID=UPI00035DB0F4
nadB; L-aspartate oxidase
RIFCSPLOWO2_02_FULL_CP_39_110_rifcsplowo2_02_scaffold_5714_19
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

16608..18839
DNA (2232bp) protein (744aa)
hypothetical protein n=1 Tax=Nitrospina sp. AB-629-B18 RepID=UPI00036B4E01
FtsK/SpoIIIE domain protein; K03466 DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
FtsK/SpoIIIE domain-containing protein
RIFCSPLOWO2_02_FULL_CP_39_110_rifcsplowo2_02_scaffold_5714_20
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

comp(18856..19116)
DNA (261bp) protein (87aa)
FmdB family regulatory protein Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
Regulatory protein, FmdB family id=3730923 bin=GWF2_Nitrospirae_44_13 species=Desulfatibacillum alkenivorans genus=Desulfatibacillum taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
FmdB family regulatory protein
RIFCSPLOWO2_02_FULL_CP_39_110_rifcsplowo2_02_scaffold_5714_21
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

19221..19466
DNA (246bp) protein (82aa)
TRASH domain-containing protein n=1 Tax=Thermodesulfatator atlanticus RepID=UPI0003B312A5
hypothetical protein Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
TRASH domain-containing protein
RIFCSPLOWO2_02_FULL_CP_39_110_rifcsplowo2_02_scaffold_5714_22
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

comp(19455..19931)
DNA (477bp) protein (159aa)
protein tyrosine phosphatase; K01104 protein-tyrosine phosphatase [EC:3.1.3.48] Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
Protein tyrosine phosphatase n=1 Tax=Caldicellulosiruptor bescii (strain ATCC BAA-1888 / DSM 6725 / Z-1320) RepID=B9MR73_CALBD
protein tyrosine phosphatase
RIFCSPLOWO2_02_FULL_CP_39_110_rifcsplowo2_02_scaffold_5714_23
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

comp(19935..20483)
DNA (549bp) protein (183aa)
GTP cyclohydrolase I n=1 Tax=Candidatus Omnitrophus fodinae SCGC AAA011-A17 RepID=UPI0003B3552F
GTP cyclohydrolase I Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
GTP cyclohydrolase I
RIFCSPLOWO2_02_FULL_CP_39_110_rifcsplowo2_02_scaffold_5714_24
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

comp(20509..22071)
DNA (1563bp) protein (521aa)
hypothetical protein n=1 Tax=Nitrospina sp. AB-629-B18 RepID=UPI00036F4BA7
carbohydrate kinase YjeF Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
carbohydrate kinase YjeF
RIFCSPLOWO2_02_FULL_CP_39_110_rifcsplowo2_02_scaffold_5714_25
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

comp(22302..22730)
DNA (429bp) protein (143aa)
hypothetical protein n=2 Tax=unclassified Aminicenantes RepID=UPI0003750F43
slr0770; hypothetical protein Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
slr0770; hypothetical protein
RIFCSPLOWO2_02_FULL_CP_39_110_rifcsplowo2_02_scaffold_5714_26
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

comp(23170..23379)
DNA (210bp) protein (70aa)
id=3068385 Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
id=3068385 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
RIFCSPLOWO2_02_FULL_CP_39_110_rifcsplowo2_02_scaffold_5714_27
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

comp(23540..23839)
DNA (300bp) protein (100aa)
plasmid stabilization system Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
Plasmid stabilization system id=3476472 bin=GWF2_Lentisphaerae_49_21 species=Chlorobium ferrooxidans genus=Chlorobium taxon_order=Chlorobiales taxon_class=Chlorobia phylum=Chlorobi tax=GWF2_Lentisphaerae_49_21 organism_group=Lentisphaerae organism_desc=Very large genome: good +
plasmid stabilization system
RIFCSPLOWO2_02_FULL_CP_39_110_rifcsplowo2_02_scaffold_5714_28
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

comp(23836..24024)
DNA (189bp) protein (63aa)
hypothetical protein Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
Putative uncharacterized protein id=3776158 bin=GWF2_Lentisphaerae_57_35 species=Chlorobium chlorochromatii genus=Chlorobium taxon_order=Chlorobiales taxon_class=Chlorobia phylum=Chlorobi tax=GWF2_Lentisphaerae_57_35 organism_group=Lentisphaerae organism_desc=a459
hypothetical protein
Displaying items 1-30 of 32 in total

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