ggKbase home page

RIFCSPLOWO2_02_FULL_CP_39_110_rifcsplowo2_02_scaffold_16693

Search features with annotation key words

Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPLOWO2_02_FULL_CP_39_110_rifcsplowo2_02_scaffold_16693_1
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

comp(207..1691)
DNA (1485bp) protein (495aa)
aldehyde dehydrogenase; K00128 aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
Aldehyde dehydrogenase n=1 Tax=candidate division ZIXI bacterium RBG-1 RepID=T0L5X5_9BACT
aldehyde dehydrogenase
RIFCSPLOWO2_02_FULL_CP_39_110_rifcsplowo2_02_scaffold_16693_2
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

comp(1956..2879)
DNA (924bp) protein (308aa)
Uncharacterized protein n=1 Tax=Listeria monocytogenes FSL R2-503 RepID=C8K417_LISMN
hypothetical protein Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
hypothetical protein
RIFCSPLOWO2_02_FULL_CP_39_110_rifcsplowo2_02_scaffold_16693_3
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

comp(3212..4318)
DNA (1107bp) protein (369aa)
ATP-dependent DNA helicase; K01529 [EC:3.6.1.-] Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
ATP-dependent DNA helicase id=2167838 bin=GWB2_Nitrospirae_rel_47_37 species=Methanosarcina mazei genus=Methanosarcina taxon_order=Methanosarcinales taxon_class=Methanomicrobia phylum=Euryarchaeota tax=GWB2_Nitrospirae_rel_47_37 organism_group=Nitrospirae organism_desc=Good + (but may not be Nitrospirae phylum)
ATP-dependent DNA helicase
RIFCSPLOWO2_02_FULL_CP_39_110_rifcsplowo2_02_scaffold_16693_4
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

4521..5777
DNA (1257bp) protein (419aa)
secretion protein HlyD; K02005 HlyD family secretion protein Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
Efflux transporter protein id=3730999 bin=GWF2_Nitrospirae_44_13 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=TA06 tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
secretion protein HlyD
RIFCSPLOWO2_02_FULL_CP_39_110_rifcsplowo2_02_scaffold_16693_5
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

5778..6479
DNA (702bp) protein (234aa)
ABC transporter related protein n=1 Tax=Caldicellulosiruptor kronotskyensis (strain DSM 18902 / VKM B-2412 / 2002) RepID=E4SDV4_CALK2
ABC transporter-like protein; K02003 putative ABC transport system ATP-binding protein Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
ABC transporter-like protein
RIFCSPLOWO2_02_FULL_CP_39_110_rifcsplowo2_02_scaffold_16693_6
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

6677..7876
DNA (1200bp) protein (400aa)
ABC transporter; K02004 putative ABC transport system permease protein Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
Efflux ABC transporter, permease protein id=4002143 bin=GWC2_Nitrospirae_57_13 species=Megasphaera micronuciformis genus=Megasphaera taxon_order=Selenomonadales taxon_class=Negativicutes phylum=Firmicutes tax=GWC2_Nitrospirae_57_13 organism_group=Nitrospirae organism_desc=Same as C1_57_7 and D2_57_8
ABC transporter
RIFCSPLOWO2_02_FULL_CP_39_110_rifcsplowo2_02_scaffold_16693_7
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

comp(7931..9388)
DNA (1458bp) protein (486aa)
glutamyl-tRNA(Gln) amidotransferase subunit A (EC:3.5.1.4); K02433 aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
glutamyl-tRNA(Gln) amidotransferase subunit A (EC:3.5.1.4)
Glutamyl-tRNA(Gln) amidotransferase subunit A id=2726832 bin=GWC2_Nitrospirae-rel_56_14 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Nitrospirae-rel_56_14 organism_group=Nitrospirae organism_desc=Pretty good; based on recA
RIFCSPLOWO2_02_FULL_CP_39_110_rifcsplowo2_02_scaffold_16693_8
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

comp(9459..10289)
DNA (831bp) protein (277aa)
hypothetical protein n=1 Tax=Candidatus Poribacteria sp. WGA-4E RepID=UPI00037239F1
hypothetical protein Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
RIFCSPLOWO2_02_FULL_CP_39_110_rifcsplowo2_02_scaffold_16693_9
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

comp(10289..11206)
DNA (918bp) protein (306aa)
modification methylase; K13581 modification methylase [EC:2.1.1.72] Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
hypothetical protein n=1 Tax=Poribacteria bacterium WGA-3G RepID=UPI0003B37C8E
modification methylase
RIFCSPLOWO2_02_FULL_CP_39_110_rifcsplowo2_02_scaffold_16693_10
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

comp(11209..11502)
DNA (294bp) protein (98aa)
aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C; K02435 aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7] Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C (EC:6.3.5.-)
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C n=1 Tax=Thermosediminibacter oceani (strain ATCC BAA-1034 / DSM 16646 / JW/IW-1228P) RepID=D9S200_THEOJ
RIFCSPLOWO2_02_FULL_CP_39_110_rifcsplowo2_02_scaffold_16693_11
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

comp(11633..14101)
DNA (2469bp) protein (823aa)
ATP-dependent protease La (EC:3.4.21.53); K01338 ATP-dependent Lon protease [EC:3.4.21.53] Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
ATP-dependent protease La (EC:3.4.21.53)
Lon protease id=4128002 bin=GWF2_Nitrospirae_44_13 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
RIFCSPLOWO2_02_FULL_CP_39_110_rifcsplowo2_02_scaffold_16693_12
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

comp(14115..14579)
DNA (465bp) protein (155aa)
heat shock protein Hsp20; K13993 HSP20 family protein Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
heat shock protein Hsp20; K13993 HSP20 family protein id=15193127 bin=GWC2_NOV_55_46 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_NOV_55_46 organism_group=Proteobacteria
heat shock protein Hsp20
RIFCSPLOWO2_02_FULL_CP_39_110_rifcsplowo2_02_scaffold_16693_13
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

comp(14671..15534)
DNA (864bp) protein (288aa)
UTP-glucose-1-phosphate uridylyltransferase; K00963 UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
UTP-glucose-1-phosphate uridylyltransferase id=3350562 bin=GWC2_Nitrospirae_57_13 species=unknown genus=Dictyoglomus taxon_order=Dictyoglomales taxon_class=Dictyoglomia phylum=Dictyoglomi tax=GWC2_Nitrospirae_57_13 organism_group=Nitrospirae organism_desc=Same as C1_57_7 and D2_57_8
UTP-glucose-1-phosphate uridylyltransferase
RIFCSPLOWO2_02_FULL_CP_39_110_rifcsplowo2_02_scaffold_16693_14
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

comp(15524..16885)
DNA (1362bp) protein (454aa)
threonine synthase (EC:4.2.3.1); K01733 threonine synthase [EC:4.2.3.1] Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
threonine synthase (EC:4.2.3.1)
Threonine synthase id=3866786 bin=GWC2_Planctomycete_KSU_39_26 species=planctomycete KSU-1 genus=unknown taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWC2_Planctomycete_KSU_39_26 organism_group=Planctomycetes
RIFCSPLOWO2_02_FULL_CP_39_110_rifcsplowo2_02_scaffold_16693_15
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

comp(16958..17578)
DNA (621bp) protein (207aa)
hypothetical protein Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
Uncharacterized protein id=2751628 bin=GWF2_Melioribacter_38_21 species=Ignavibacterium album genus=Ignavibacterium taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=GWF2_Melioribacter_38_21 organism_group=Ignavibacteria
hypothetical protein
RIFCSPLOWO2_02_FULL_CP_39_110_rifcsplowo2_02_scaffold_16693_16
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

comp(17575..18189)
DNA (615bp) protein (205aa)
phosphoribosylglycinamide formyltransferase (EC:2.1.2.2); K11175 phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2] Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
phosphoribosylglycinamide formyltransferase (EC:2.1.2.2)
hypothetical protein n=1 Tax=Atribacteria bacterium SCGC AAA252-M02 RepID=UPI000374F7B5
RIFCSPLOWO2_02_FULL_CP_39_110_rifcsplowo2_02_scaffold_16693_17
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

comp(18338..18484)
DNA (147bp) protein (49aa)
anion transporter Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
Anion transporter id=24549051 bin=RBG_19FT_COMBO_GAL15_69_19 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
anion transporter
Displaying 17 items

View Taxonomy