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RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_rifcsplowo2_12_scaffold_6279

Search features with annotation key words

Displaying items 1-30 of 39 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_rifcsplowo2_12_scaffold_6279_1
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

Not on your lists

comp(3..1118)
-----------------
DNA (1116bp)
protein (372aa)
Mg chelatase subunit ChlI; K07391 magnesium chelatase family protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
Mg chelatase subunit ChlI; K07391 magnesium chelatase family protein id=12554107 bin=CNBR_ACIDO species=Deinococcus maricopensis genus=Deinococcus taxon_order=Deinococcales taxon_class=Deinococci phylum=Deinococcus-Thermus tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
Mg chelatase subunit ChlI
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_rifcsplowo2_12_scaffold_6279_2
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

Not on your lists

1228..4041
-----------------
DNA (2814bp)
protein (938aa)
Uncharacterized protein n=1 Tax=Nitrospina gracilis 3/211 RepID=M1Z144_9BACT id=5225473 bin=16ft_combo_ws3_JS1 species=Nitrospina gracilis genus=Nitrospina taxon_order=Nitrospinales taxon_class=Nitrospinia phylum=Nitrospinae tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
Uncharacterized protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_rifcsplowo2_12_scaffold_6279_3
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

Not on your lists

comp(4106..5626)
-----------------
DNA (1521bp)
protein (507aa)
lytic transglycosylase, catalytic; K08307 membrane-bound lytic murein transglycosylase D [EC:3.2.1.-] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
lytic transglycosylase, catalytic; K08307 membrane-bound lytic murein transglycosylase D [EC:3.2.1.-] id=12554103 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
lytic transglycosylase, catalytic
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_rifcsplowo2_12_scaffold_6279_4
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

Not on your lists

comp(5910..7610)
-----------------
DNA (1701bp)
protein (567aa)
acetaldehyde dehydrogenase; K00132 acetaldehyde dehydrogenase (acetylating) [EC:1.2.1.10] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
acetaldehyde dehydrogenase; K00132 acetaldehyde dehydrogenase (acetylating) [EC:1.2.1.10] id=12554102 bin=CNBR_ACIDO species=Desulfotomaculum reducens genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
acetaldehyde dehydrogenase
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_rifcsplowo2_12_scaffold_6279_5
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

Not on your lists

comp(7649..7945)
-----------------
DNA (297bp)
protein (99aa)
microcompartments protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
microcompartments protein id=12554101 bin=CNBR_ACIDO species=unknown genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
microcompartments protein
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_rifcsplowo2_12_scaffold_6279_6
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

Not on your lists

7967..8854
-----------------
DNA (888bp)
protein (296aa)
id=12554100 Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
id=12554100 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_rifcsplowo2_12_scaffold_6279_7
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

Not on your lists

8857..9588
-----------------
DNA (732bp)
protein (244aa)
lytic transglycosylase Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
lytic transglycosylase id=12554099 bin=CNBR_ACIDO species=Methyloversatilis universalis genus=Methyloversatilis taxon_order=Rhodocyclales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
lytic transglycosylase
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_rifcsplowo2_12_scaffold_6279_8
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

Not on your lists

9673..10878
-----------------
DNA (1206bp)
protein (402aa)
pulF; type II secretion system protein PulF; K02653 type IV pilus assembly protein PilC Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
type II secretion system protein; K02653 type IV pilus assembly protein PilC id=12554098 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
pulF; type II secretion system inner membrane protein PulF
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_rifcsplowo2_12_scaffold_6279_9
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

Not on your lists

10878..12539
-----------------
DNA (1662bp)
protein (554aa)
type II secretion system protein E; K02652 type IV pilus assembly protein PilB Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
type II secretion system protein E; K02652 type IV pilus assembly protein PilB id=12554097 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
type II secretion system protein E
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_rifcsplowo2_12_scaffold_6279_10
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

Not on your lists

12536..12664
-----------------
DNA (129bp)
protein (43aa)
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_rifcsplowo2_12_scaffold_6279_11
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

Not on your lists

12683..13486
-----------------
DNA (804bp)
protein (268aa)
Tfp pilus assembly protein ATPase PilM-like protein; K02662 type IV pilus assembly protein PilM Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
hypothetical protein; K02662 type IV pilus assembly protein PilM id=12554096 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
Tfp pilus assembly protein ATPase PilM-like protein
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_rifcsplowo2_12_scaffold_6279_12
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

Not on your lists

13489..14121
-----------------
DNA (633bp)
protein (211aa)
fimbrial assembly family protein; K02663 type IV pilus assembly protein PilN Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
fimbrial assembly family protein; K02663 type IV pilus assembly protein PilN id=12554095 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_rifcsplowo2_12_scaffold_6279_13
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

Not on your lists

14118..14720
-----------------
DNA (603bp)
protein (201aa)
id=12554094 Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
id=12554094 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_rifcsplowo2_12_scaffold_6279_14
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

Not on your lists

14710..15270
-----------------
DNA (561bp)
protein (187aa)
Uncharacterized protein n=1 Tax=Cupriavidus basilensis OR16 RepID=H1S3K3_9BURK
putative proline rich transmembrane protein
Uncharacterized protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_rifcsplowo2_12_scaffold_6279_15
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

Not on your lists

15224..16516
-----------------
DNA (1293bp)
protein (431aa)
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_rifcsplowo2_12_scaffold_6279_16
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

Not on your lists

comp(16643..16936)
-----------------
DNA (294bp)
protein (98aa)
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_rifcsplowo2_12_scaffold_6279_17
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

Not on your lists

17386..17763
-----------------
DNA (378bp)
protein (126aa)
type II secretory pathway, component PulD Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
type II secretory pathway, component PulD id=12554092 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_rifcsplowo2_12_scaffold_6279_18
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

Not on your lists

17763..18230
-----------------
DNA (468bp)
protein (156aa)
prepilin-type N-terminal cleavage/methylation domain-containing protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
putative secretion protein; K02456 general secretion pathway protein G id=12554091 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
prepilin-type N-terminal cleavage/methylation domain-containing protein
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_rifcsplowo2_12_scaffold_6279_19
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

Not on your lists

18307..18675
-----------------
DNA (369bp)
protein (123aa)
general secretion pathway protein G; K02456 general secretion pathway protein G Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
type II secretion system protein G; K02456 general secretion pathway protein G id=12554090 bin=CNBR_ACIDO species=Leptothrix cholodnii genus=Leptothrix taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
general secretion pathway protein G
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_rifcsplowo2_12_scaffold_6279_20
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

Not on your lists

18707..19462
-----------------
DNA (756bp)
protein (252aa)
uroporphyrinogen III synthase HEM4; K01719 uroporphyrinogen-III synthase [EC:4.2.1.75] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
Uroporphyrinogen-III synthase n=1 Tax=Roseiflexus sp. (strain RS-1) RepID=A5UU38_ROSS1
uroporphyrinogen III synthase HEM4
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_rifcsplowo2_12_scaffold_6279_21
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

Not on your lists

19459..20724
-----------------
DNA (1266bp)
protein (422aa)
histidine kinase Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
two-component histidine kinase id=24575396 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Gemmatimonas aurantiaca genus=Gemmatimonas taxon_order=Gemmatimonadales taxon_class=Gemmatimonadetes phylum=Gemmatimonadetes tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
histidine kinase dimerization and phosphoacceptor region
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_rifcsplowo2_12_scaffold_6279_22
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

Not on your lists

20736..21380
-----------------
DNA (645bp)
protein (215aa)
LuxR family DNA-binding response regulator Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
LuxR family transcriptional regulator id=24575395 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Sideroxydans lithotrophicus genus=Sideroxydans taxon_order=Gallionellales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
LuxR family transcriptional regulator
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_rifcsplowo2_12_scaffold_6279_23
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

Not on your lists

21452..22555
-----------------
DNA (1104bp)
protein (368aa)
glutamyl-tRNA reductase (EC:1.2.1.70); K02492 glutamyl-tRNA reductase [EC:1.2.1.70] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
glutamyl-tRNA reductase (EC:1.2.1.70)
Glutamyl-tRNA reductase n=1 Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1C4R6_SPHTD
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_rifcsplowo2_12_scaffold_6279_24
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

Not on your lists

22552..23481
-----------------
DNA (930bp)
protein (310aa)
Porphobilinogen deaminase n=1 Tax=Myxococcus stipitatus (strain DSM 14675 / JCM 12634 / Mx s8) RepID=L7U8E3_MYXSD
porphobilinogen deaminase Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
porphobilinogen deaminase
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_rifcsplowo2_12_scaffold_6279_25
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

Not on your lists

23478..24464
-----------------
DNA (987bp)
protein (329aa)
delta-aminolevulinic acid dehydratase (EC:4.2.1.24); K01698 porphobilinogen synthase [EC:4.2.1.24] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
delta-aminolevulinic acid dehydratase (EC:4.2.1.24)
Delta-aminolevulinic acid dehydratase n=1 Tax=Roseiflexus castenholzii (strain DSM 13941 / HLO8) RepID=A7NKV0_ROSCS
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_rifcsplowo2_12_scaffold_6279_26
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

Not on your lists

24461..25759
-----------------
DNA (1299bp)
protein (433aa)
glutamate-1-semialdehyde 2,1-aminomutase (EC:5.4.3.8); K01845 glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
glutamate-1-semialdehyde 2,1-aminomutase (EC:5.4.3.8)
Glutamate-1-semialdehyde 2,1-aminomutase n=1 Tax=Rhodopirellula sp. SWK7 RepID=M5TI52_9PLAN
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_rifcsplowo2_12_scaffold_6279_27
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

Not on your lists

25756..26772
-----------------
DNA (1017bp)
protein (339aa)
uroporphyrinogen decarboxylase (EC:4.1.1.37); K01599 uroporphyrinogen decarboxylase [EC:4.1.1.37] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
uroporphyrinogen decarboxylase (EC:4.1.1.37)
Uroporphyrinogen decarboxylase n=1 Tax=Haliangium ochraceum (strain DSM 14365 / JCM 11303 / SMP-2) RepID=D0LIL5_HALO1
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_rifcsplowo2_12_scaffold_6279_28
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

Not on your lists

26760..28163
-----------------
DNA (1404bp)
protein (468aa)
coproporphyrinogen III oxidase (EC:1.3.99.22); K02495 oxygen-independent coproporphyrinogen III oxidase [EC:1.3.99.22] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
coproporphyrinogen III oxidase (EC:1.3.99.22)
Coproporphyrinogen-III oxidase n=1 Tax=Anaeromyxobacter dehalogenans (strain 2CP-C) RepID=Q2IPY1_ANADE
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_rifcsplowo2_12_scaffold_6279_29
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

Not on your lists

28160..29536
-----------------
DNA (1377bp)
protein (459aa)
protoporphyrinogen oxidase (EC:1.3.3.4); K00231 oxygen-dependent protoporphyrinogen oxidase [EC:1.3.3.4] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
protoporphyrinogen oxidase (EC:1.3.3.4)
Protoporphyrinogen oxidase n=1 Tax=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) RepID=B3E337_GEOLS
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_rifcsplowo2_12_scaffold_6279_30
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

Not on your lists

29533..30468
-----------------
DNA (936bp)
protein (312aa)
ferrochelatase; K01772 ferrochelatase [EC:4.99.1.1] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
Ferrochelatase, putative n=1 Tax=Pelodictyon luteolum (strain DSM 273) RepID=Q3B4W6_PELLD
ferrochelatase
Displaying items 1-30 of 39 in total

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