ggKbase home page

RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_110_rifcsplowo2_12_scaffold_5477

Search features with annotation key words

Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_110_rifcsplowo2_12_scaffold_5477_trna_2
unknown

Not on your lists

comp(1..71)
DNA (71bp)
transferRNA
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_110_rifcsplowo2_12_scaffold_5477_trna_1
unknown

Not on your lists

comp(166..238)
DNA (73bp)
transferRNA
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_110_rifcsplowo2_12_scaffold_5477_1
RBG_16_Betaproteobacteria_64_18_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(278..847)
DNA (570bp) protein (190aa)
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (EC:2.7.8.5); K00995 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase [EC:2.7.8.5] Tax=RBG_16_Betaproteobacteria_64
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (EC:2.7.8.5)
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DJ29_9PROT
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_110_rifcsplowo2_12_scaffold_5477_2
RBG_16_Betaproteobacteria_64_18_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(837..2714)
DNA (1878bp) protein (626aa)
UvrABC system protein C n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=UVRC_NITMU
uvrC; excinuclease ABC subunit C; K03703 excinuclease ABC subunit C Tax=RBG_16_Betaproteobacteria_64_18_curated
uvrC; excinuclease ABC subunit C
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_110_rifcsplowo2_12_scaffold_5477_3
RBG_16_Betaproteobacteria_64_18_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2711..3382)
DNA (672bp) protein (224aa)
hypothetical protein Tax=RBG_16_Betaproteobacteria_64_18_curated
hypothetical protein id=12497954 bin=THIO_MID species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
hypothetical protein
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_110_rifcsplowo2_12_scaffold_5477_4
RBG_16_Betaproteobacteria_64_18_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3518..4537)
DNA (1020bp) protein (340aa)
glycoside hydrolase family 3 domain protein; K01207 beta-N-acetylhexosaminidase [EC:3.2.1.52] Tax=RBG_16_Betaproteobacteria_64_18_curated
Beta-hexosaminidase n=1 Tax=Sideroxydans lithotrophicus (strain ES-1) RepID=D5CRD8_SIDLE
glycoside hydrolase family 3 domain protein
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_110_rifcsplowo2_12_scaffold_5477_5
RBG_16_Betaproteobacteria_64_18_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4537..4917)
DNA (381bp) protein (127aa)
holo-ACP synthase; K00997 holo-[acyl-carrier protein] synthase [EC:2.7.8.7] Tax=RBG_16_Betaproteobacteria_64_18_curated
Holo-[acyl-carrier-protein] synthase n=1 Tax=Nitrosomonas sp. (strain Is79A3) RepID=F8GKI5_NITSI
holo-ACP synthase
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_110_rifcsplowo2_12_scaffold_5477_6
RBG_16_Betaproteobacteria_64_18_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4914..5645)
DNA (732bp) protein (244aa)
pdxJ; pyridoxine 5'-phosphate synthase; K03474 pyridoxine 5-phosphate synthase [EC:2.6.99.2] Tax=RBG_16_Betaproteobacteria_64_18_curated
Pyridoxine 5'-phosphate synthase n=3 Tax=Burkholderia pseudomallei RepID=PDXJ_BURPS
pdxJ; pyridoxine 5'-phosphate synthase
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_110_rifcsplowo2_12_scaffold_5477_7
RBG_16_Betaproteobacteria_64_18_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5642..6364)
DNA (723bp) protein (241aa)
DNA repair protein RecO n=1 Tax=Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) RepID=G8QMI8_AZOSU
DNA repair protein RecO; K03584 DNA repair protein RecO (recombination protein O) Tax=RBG_16_Betaproteobacteria_64_18_curated
DNA repair protein RecO
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_110_rifcsplowo2_12_scaffold_5477_8
RBG_16_Betaproteobacteria_64_18_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6357..7286)
DNA (930bp) protein (310aa)
GTPase Era n=1 Tax=Thauera sp. 63 RepID=N6Y956_9RHOO
era; GTP-binding protein Era; K03595 GTP-binding protein Era Tax=RBG_16_Betaproteobacteria_64_18_curated
era; GTP-binding protein Era
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_110_rifcsplowo2_12_scaffold_5477_9
RBG_16_Betaproteobacteria_64_18_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7283..7951)
DNA (669bp) protein (223aa)
rnc; ribonuclease III (rnase III) protein; K03685 ribonuclease III [EC:3.1.26.3] Tax=RBG_16_Betaproteobacteria_64_18_curated
Ribonuclease 3 n=3 Tax=Ralstonia solanacearum RepID=B5SME6_RALSL
rnc; ribonuclease III (rnase III) protein
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_110_rifcsplowo2_12_scaffold_5477_10
RBG_16_Betaproteobacteria_64_18_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7975..8301)
DNA (327bp) protein (109aa)
hypothetical protein n=1 Tax=Rhodocyclus sp. UW 659-1-F08 RepID=UPI00037F7FC4
hypothetical protein Tax=RBG_16_Betaproteobacteria_64_18_curated
hypothetical protein
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_110_rifcsplowo2_12_scaffold_5477_11
RBG_16_Betaproteobacteria_64_18_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8400..9188)
DNA (789bp) protein (263aa)
lepB; signal peptidase I (SPase I) transmembrane protein (EC:3.4.23.36); K03100 signal peptidase I [EC:3.4.21.89] Tax=RBG_16_Betaproteobacteria_64_18_curated
lepB; signal peptidase I (SPase I) transmembrane protein (EC:3.4.23.36)
Signal peptidase I n=1 Tax=Aromatoleum aromaticum (strain EbN1) RepID=Q5P088_AROAE
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_110_rifcsplowo2_12_scaffold_5477_12
RBG_16_Betaproteobacteria_64_18_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9297..11090)
DNA (1794bp) protein (598aa)
Elongation factor 4 n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=LEPA_NITMU
GTP-binding protein LepA; K03596 GTP-binding protein LepA Tax=RBG_16_Betaproteobacteria_64_18_curated
GTP-binding protein LepA
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_110_rifcsplowo2_12_scaffold_5477_13
RBG_16_Betaproteobacteria_64_18_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11220..11483)
DNA (264bp) protein (88aa)
Glutaredoxin-like domain protein n=1 Tax=Pseudogulbenkiania sp. (strain NH8B) RepID=G2J2M2_PSEUL
glutaredoxin-like domain containing protein Tax=RBG_16_Betaproteobacteria_64_18_curated
glutaredoxin-like domain containing protein
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_110_rifcsplowo2_12_scaffold_5477_14
RBG_16_Betaproteobacteria_64_18_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11476..12906)
DNA (1431bp) protein (477aa)
protease Do (EC:3.4.21.107); K01362 [EC:3.4.21.-] Tax=RBG_16_Betaproteobacteria_64_18_curated
protease Do (EC:3.4.21.107)
peptidase n=1 Tax=Rhodocyclus sp. UW 659-1-F08 RepID=UPI00035DFEEC
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_110_rifcsplowo2_12_scaffold_5477_15
RBG_16_Betaproteobacteria_64_18_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12994..13965)
DNA (972bp) protein (324aa)
hypothetical protein n=1 Tax=Herbaspirillum sp. JC206 RepID=UPI00036BD07F
algN; sigma factor algU regulatory protein mucB; K03598 sigma-E factor negative regulatory protein RseB Tax=RBG_16_Betaproteobacteria_64_18_curated
algN; sigma factor algU regulatory protein mucB
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_110_rifcsplowo2_12_scaffold_5477_16
RBG_16_Betaproteobacteria_64_18_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13962..14477)
DNA (516bp) protein (172aa)
Sigma factor RpoE negative regulatory protein RseA n=1 Tax=Nitrosospira sp. APG3 RepID=M5DIT8_9PROT
anti sigma-E protein, RseA Tax=RBG_16_Betaproteobacteria_64_18_curated
anti sigma-E protein, RseA
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_110_rifcsplowo2_12_scaffold_5477_17
RBG_16_Betaproteobacteria_64_18_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14477..15076)
DNA (600bp) protein (200aa)
RNA polymerase sigma factor n=1 Tax=Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) RepID=G8QMH9_AZOSU
RNA polymerase sigma factor RpoE; K03088 RNA polymerase sigma-70 factor, ECF subfamily Tax=RBG_16_Betaproteobacteria_64_18_curated
RNA polymerase sigma factor RpoE
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_110_rifcsplowo2_12_scaffold_5477_18
RBG_16_Betaproteobacteria_64_18_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15196..15597)
DNA (402bp) protein (134aa)
Tax=RBG_16_Betaproteobacteria_64_18_curated
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_110_rifcsplowo2_12_scaffold_5477_19
RBG_16_Betaproteobacteria_64_18_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15648..16592)
DNA (945bp) protein (315aa)
fabF; beta-ketoacyl synthase (EC:2.3.1.179) Tax=RBG_16_Betaproteobacteria_64_18_curated
3-oxoacyl-[acyl-carrier-protein] synthase 2 n=1 Tax=Nitrosospira sp. APG3 RepID=M5DIQ6_9PROT
fabF; 3-oxoacyl-[acyl carrier protein] synthase I
Displaying 21 items

View Taxonomy