ggKbase home page

RIFCSPLOWO2_12_FULL_Pseudomonas_fluorescens_59_450_rifcsplowo2_12_scaffold_5515_4

Organism: Pseudomonadales bacterium RIFCSPLOWO2_12_FULL_59_450

near complete RP 41 / 55 MC: 5 BSCG 45 / 51 MC: 2 ASCG 14 / 38 MC: 2
Location: comp(2931..3191)

Top 3 Functional Annotations

Value Algorithm Source
RNA-binding protein Hfq n=5 Tax=Pseudomonas RepID=I2BUV8_PSEFL similarity UNIREF
DB: UNIREF100
  • Identity: 100.0
  • Coverage: 86.0
  • Bit_score: 172
  • Evalue 2.10e-40
RNA-binding protein Hfq similarity KEGG
DB: KEGG
  • Identity: 100.0
  • Coverage: 86.0
  • Bit_score: 172
  • Evalue 5.90e-41
RNA-binding protein Hfq {ECO:0000256|HAMAP-Rule:MF_00436, ECO:0000256|SAAS:SAAS00067493}; TaxID=1470593 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseud similarity UNIPROT
DB: UniProtKB
  • Identity: 100.0
  • Coverage: 86.0
  • Bit_score: 172
  • Evalue 2.90e-40

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Pseudomonas sp. RIT357 → Pseudomonas → Pseudomonadales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 261
ATGTCAAAAGGGCATTCGCTACAAGACCCTTACTTGAATACTTTACGTAAAGAGAAAGTTGGGGTTTCCATCTATCTGGTCAACGGCATCAAGCTGCAAGGTACGATCGAGTCGTTCGACCAATTCGTTATCCTGCTGAAAAACACCGTCAGCCAGATGGTTTACAAGCACGCTATCTCGACAGTCGTTCCAGTTCGTCCAATCCGTCTGCCTAGCGCAGCCGGTGATGAACAGGGTGACGCTGAGCCAGGTAACGCCTGA
PROTEIN sequence
Length: 87
MSKGHSLQDPYLNTLRKEKVGVSIYLVNGIKLQGTIESFDQFVILLKNTVSQMVYKHAISTVVPVRPIRLPSAAGDEQGDAEPGNA*