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RTP_01242018_0_2um_scaffold_1096

Search features with annotation key words

Displaying items 1-30 of 40 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RTP_01242018_0_2um_scaffold_1096_1
Massilia sp. LC238, Massilia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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3..386
DNA (384bp) protein (128aa)
Phosphoribosylformylglycinamidine cyclo-ligase {ECO:0000256|HAMAP-Rule:MF_00741, ECO:0000256|RuleBase:RU004370}; EC=6.3.3.1 {ECO:0000256|HAMAP-Rule:MF_00741, ECO:0000256|RuleBase:RU004370};; AIR synthase {ECO:0000256|HAMAP-Rule:MF_00741}; AIRS {ECO:0000256|HAMAP-Rule:MF_00741}; Phosphoribosyl-aminoimidazole synthetase {ECO:0000256|HAMAP-Rule:MF_00741}; TaxID=1502852 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Massilia.;" source="Massilia sp. LC238.;"
purM; phosphoribosylformylglycinamidine cyclo-ligase (EC:6.3.3.1)
Phosphoribosylformylglycinamidine cyclo-ligase n=1 Tax=Herbaspirillum frisingense GSF30 RepID=R0G9G1_9BURK
RTP_01242018_0_2um_scaffold_1096_2

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405..677
DNA (273bp) protein (91aa)
Fe(II) trafficking protein YggX n=1 Tax=mine drainage metagenome RepID=E6QTL8_9ZZZZ
Fe(II) trafficking protein YggX {ECO:0000313|EMBL:CBI10590.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
hypothetical protein
RTP_01242018_0_2um_scaffold_1096_3
RBG_16_Betaproteobacteria_58_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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1054..1860
DNA (807bp) protein (269aa)
ABC-type phosphate/phosphonate transport system periplasmic component-like protein n=1 Tax=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) RepID=B3E9B6_GEOLS
phosphate/phosphonate ABC transporter periplasmic protein PhnD family protein
Tax=RBG_16_Betaproteobacteria_58_11_curated
RTP_01242018_0_2um_scaffold_1096_4
RBG_16_Betaproteobacteria_58_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1940..2485
DNA (546bp) protein (182aa)
Uncharacterized protein n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6B114_9PROT
hypothetical protein
Tax=RBG_16_Betaproteobacteria_58_11_curated
RTP_01242018_0_2um_scaffold_1096_5
Sulfuricella denitrificans, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2529..3767)
DNA (1239bp) protein (413aa)
diaminopimelate decarboxylase (EC:4.1.1.20)
Diaminopimelate decarboxylase {ECO:0000256|HAMAP-Rule:MF_02120, ECO:0000256|RuleBase:RU003738}; Short=DAP decarboxylase {ECO:0000256|HAMAP-Rule:MF_02120};; Short=DAPDC {ECO:0000256|HAMAP-Rule:MF_02120};; EC=4.1.1.20 {ECO:0000256|HAMAP-Rule:MF_02120, ECO:0000256|RuleBase:RU003738};; TaxID=1163617 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella denitrificans skB26.;"
Diaminopimelate decarboxylase n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6AZU0_9PROT
RTP_01242018_0_2um_scaffold_1096_6

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3933..4247
DNA (315bp) protein (105aa)
Frataxin-like n=1 Tax=mine drainage metagenome RepID=E6QSE2_9ZZZZ
Frataxin-like {ECO:0000313|EMBL:CBI10164.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
hypothetical protein
RTP_01242018_0_2um_scaffold_1096_7
CG_Hydro_01, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4468..4932
DNA (465bp) protein (155aa)
hypothetical protein n=1 Tax=Thioalkalivibrio thiocyanodenitrificans RepID=UPI0003714F29
DoxX family protein
Tax=CG_Hydro_01
RTP_01242018_0_2um_scaffold_1096_8
CG_Hydro_01, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4935..5498
DNA (564bp) protein (188aa)
hypothetical protein n=1 Tax=Methylophilus RepID=UPI00036E2007
ECF subfamily RNA polymerase sigma-24 subunit
Tax=CG_Hydro_01
RTP_01242018_0_2um_scaffold_1096_9
CG_Hydro_01, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5501..5767
DNA (267bp) protein (89aa)
hypothetical protein n=1 Tax=Methylovulum miyakonense RepID=UPI0003701E41
hypothetical protein
Tax=CG_Hydro_01
RTP_01242018_0_2um_scaffold_1096_10
unknown

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5809..6117
DNA (309bp) protein (103aa)

This feature has no annotations

RTP_01242018_0_2um_scaffold_1096_11
Dechloromonas aromatica, Dechloromonas, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

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6257..6598
DNA (342bp) protein (114aa)
Putative uncharacterized protein n=1 Tax=Dechloromonas aromatica (strain RCB) RepID=Q47B99_DECAR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAZ47882.1}; Flags: Precursor;; TaxID=159087 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Dechloromonas.;" source="Dechloromonas aromatica (strain RCB).;"
RTP_01242018_0_2um_scaffold_1096_12
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6605..7450
DNA (846bp) protein (282aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000377B5D0
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_01242018_0_2um_scaffold_1096_13
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7422..8210
DNA (789bp) protein (263aa)
Putative uncharacterized protein id=1304137 bin=GWE1_T_denit_62_9 species=Nitrosospira sp. APG3 genus=Nitrosospira taxon_order=Nitrosomonadales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_01242018_0_2um_scaffold_1096_14
CG_Beta_01, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8268..9734
DNA (1467bp) protein (489aa)
Diguanylate phosphodiesterase n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6AHN2_9PROT
diguanylate phosphodiesterase
Tax=CG_Beta_01
RTP_01242018_0_2um_scaffold_1096_15
Candidatus Methylopumilus turicensis, Candidatus Methylopumilus, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9731..10288)
DNA (558bp) protein (186aa)
Molybdenum cofactor guanylyltransferase {ECO:0000256|HAMAP-Rule:MF_00316, ECO:0000256|SAAS:SAAS00049907}; Short=MoCo guanylyltransferase {ECO:0000256|HAMAP-Rule:MF_00316};; EC=2.7.7.77 {ECO:0000256|HAMAP-Rule:MF_00316, ECO:0000256|SAAS:SAAS00049907};; GTP:molybdopterin guanylyltransferase {ECO:0000256|HAMAP-Rule:MF_00316}; Mo-MPT guanylyltransferase {ECO:0000256|HAMAP-Rule:MF_00316}; Molybdopterin guanylyltransferase {ECO:0000256|HAMAP-Rule:MF_00316}; Molybdopterin-guanine dinucleotide synthase {ECO:0000256|HAMAP-Rule:MF_00316}; TaxID=1581680 species="Bacteria; Proteobacteria; Betaproteobacteria; Methylophilales; Methylophilaceae.;" source="Methylophilaceae bacterium MMS-10A-171.;"
Molybdenum cofactor guanylyltransferase n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6ABB7_9PROT
mobA; molybdopterin-guanine dinucleotide synthase
RTP_01242018_0_2um_scaffold_1096_16
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10275..11924)
DNA (1650bp) protein (550aa)
Transmembrane protein n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6AJ43_9PROT
transmembrane protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
RTP_01242018_0_2um_scaffold_1096_17
Sulfuritalea hydrogenivorans, Sulfuritalea, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(12031..12240)
DNA (210bp) protein (70aa)
50S ribosomal protein L31 n=1 Tax=Methylophilus RepID=UPI00036AD673
rpmE; 50S ribosomal protein L31
50S ribosomal protein L31 {ECO:0000256|HAMAP-Rule:MF_00501, ECO:0000256|SAAS:SAAS00004482}; TaxID=1223802 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Sulfuritalea.;" source="Sulfuritalea hydrogenivorans sk43H.;"
RTP_01242018_0_2um_scaffold_1096_trna_1
unknown

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12403..12476
DNA (74bp)
transferRNA Met
RTP_01242018_0_2um_scaffold_1096_18

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12704..13963
DNA (1260bp) protein (420aa)
Putative Phage integrase n=1 Tax=mine drainage metagenome RepID=E6QX46_9ZZZZ
Putative Phage integrase {ECO:0000313|EMBL:CBI11820.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
integrase
RTP_01242018_0_2um_scaffold_1096_19
unknown

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comp(14249..14503)
DNA (255bp) protein (85aa)

This feature has no annotations

RTP_01242018_0_2um_scaffold_1096_20
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14571..15071)
DNA (501bp) protein (167aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI0003624E2E
outer membrane lipoprotein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_01242018_0_2um_scaffold_1096_21
unknown

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comp(15081..15551)
DNA (471bp) protein (157aa)

This feature has no annotations

RTP_01242018_0_2um_scaffold_1096_22
unknown

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comp(15548..15796)
DNA (249bp) protein (83aa)

This feature has no annotations

RTP_01242018_0_2um_scaffold_1096_23
unknown

Not on your lists

comp(15793..16251)
DNA (459bp) protein (153aa)

This feature has no annotations

RTP_01242018_0_2um_scaffold_1096_24

Not on your lists

comp(16498..18171)
DNA (1674bp) protein (558aa)
Type IV conjugative transfer system coupling protein TraD n=2 Tax=mine drainage metagenome RepID=T0ZZA0_9ZZZZ
Type IV conjugative transfer system coupling protein TraD {ECO:0000313|EMBL:EQD53571.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
type IV secretory pathway vird4 component
RTP_01242018_0_2um_scaffold_1096_25
unknown

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comp(18168..18329)
DNA (162bp) protein (54aa)

This feature has no annotations

RTP_01242018_0_2um_scaffold_1096_26
unknown

Not on your lists

comp(18329..18745)
DNA (417bp) protein (139aa)

This feature has no annotations

RTP_01242018_0_2um_scaffold_1096_27
unknown

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comp(18775..18870)
DNA (96bp) protein (32aa)

This feature has no annotations

RTP_01242018_0_2um_scaffold_1096_28
Thiomonas intermedia, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19019..21874)
DNA (2856bp) protein (952aa)
Conjugative relaxase domain protein n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5X4X6_THIK1
conjugative relaxase domain-containing protein
Conjugative relaxase domain protein {ECO:0000313|EMBL:ADG29800.1}; TaxID=75379 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas intermedia (strain K12) (Thiobacillus intermedius).;"
RTP_01242018_0_2um_scaffold_1096_29
unknown

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comp(21888..22103)
DNA (216bp) protein (72aa)

This feature has no annotations

Displaying items 1-30 of 40 in total

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