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RTP_01242018_0_2um_Betaproteobacteria_47_58

In projects: RTP_01242018_0_2um  |  genome_canada_sulfuriferula  |  SOB_across_mines  |  SOB_across_mines

Consensus taxonomy: Betaproteobacteria  →  Proteobacteria  →  Bacteria

Taxonomy override: Betaproteobacteria

Displaying items 301-350 of 364 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
RTP_01242018_0_2um_scaffold_597
Class: Betaproteobacteria (81.48%)
27 27196 bp 47.64 63.97 90.33
RTP_01242018_0_2um_scaffold_968
Class: Betaproteobacteria (61.11%)
18 15007 bp 45.77 64.04 96.67
RTP_01242018_0_2um_scaffold_1382
Species: R_Gallionellales_59_110 (50%)
2 8983 bp 51.24 64.05 97.32
RTP_01242018_0_2um_scaffold_2333
Species: Sulfuricella sp. T08 (60%)
5 5018 bp 49.90 64.27 101.22
RTP_01242018_0_2um_scaffold_1567
Order: Hydrogenophilales (50%)
10 7470 bp 47.97 64.34 81.81
RTP_01242018_0_2um_scaffold_1987
Order: Gallionellales (80%)
5 5425 bp 47.61 64.56 91.52
RTP_01242018_0_2um_scaffold_2278
Class: Betaproteobacteria (70%)
10 8648 bp 49.06 64.92 92.66
RTP_01242018_0_2um_scaffold_1298
Class: Betaproteobacteria (100%)
6 9873 bp 45.69 65.06 96.26
RTP_01242018_0_2um_scaffold_2335
Phylum: Proteobacteria (80%)
5 4417 bp 51.05 65.07 93.12
RTP_01242018_0_2um_scaffold_5598
Class: Betaproteobacteria (50%)
4 1859 bp 45.67 65.12 90.75
RTP_01242018_0_2um_scaffold_1859
Species: GWE1_Thiobacillus_62_9_curated (50%)
4 5950 bp 50.03 65.24 97.16
RTP_01242018_0_2um_scaffold_2313
Class: Betaproteobacteria (57.14%)
7 5075 bp 48.20 65.29 91.51
RTP_01242018_0_2um_scaffold_1692
Species: mine drainage metagenome (50%)
8 6702 bp 44.69 65.33 93.24
RTP_01242018_0_2um_scaffold_1948
Species: mine drainage metagenome (83.33%)
6 5581 bp 48.32 65.36 97.19
RTP_01242018_0_2um_scaffold_1393
Class: Betaproteobacteria (72.73%)
11 8871 bp 48.47 65.49 93.54
RTP_01242018_0_2um_scaffold_1315
Order: Methylophilales (77.78%)
9 9700 bp 46.73 65.77 94.86
RTP_01242018_0_2um_scaffold_1046
Phylum: Proteobacteria (53.33%)
15 14331 bp 47.02 65.92 93.18
RTP_01242018_0_2um_scaffold_1366
Class: Betaproteobacteria (75%)
8 9097 bp 45.96 65.94 94.18
RTP_01242018_0_2um_scaffold_3218
Class: Betaproteobacteria (75%)
4 3075 bp 42.70 66.00 93.56
RTP_01242018_0_2um_scaffold_519
Class: Betaproteobacteria (58.06%)
31 31381 bp 46.38 66.10 95.69
RTP_01242018_0_2um_scaffold_1785
Class: Betaproteobacteria (60%)
5 6234 bp 48.62 66.10 95.04
RTP_01242018_0_2um_scaffold_1585
Class: Betaproteobacteria (71.43%)
14 11960 bp 47.11 66.16 97.50
RTP_01242018_0_2um_scaffold_957
Phylum: Proteobacteria (62.5%)
16 15209 bp 48.77 66.16 95.94
RTP_01242018_0_2um_scaffold_2289
Class: Betaproteobacteria (100%)
5 4552 bp 46.27 66.20 97.28
RTP_01242018_0_2um_scaffold_6316
Species: mine drainage metagenome (100%)
1 1699 bp 45.62 66.30 89.35
RTP_01242018_0_2um_scaffold_1909
Class: Betaproteobacteria (88.89%)
9 5745 bp 44.89 66.40 88.63
RTP_01242018_0_2um_scaffold_1736
Species: mine drainage metagenome (50%)
12 10370 bp 48.26 66.41 85.86
RTP_01242018_0_2um_scaffold_9712
Species: mine drainage metagenome (50%)
2 1286 bp 43.86 66.49 76.05
RTP_01242018_0_2um_scaffold_5090
Phylum: Proteobacteria (57.14%)
7 3906 bp 43.57 66.55 69.59
RTP_01242018_0_2um_scaffold_1010
Phylum: Proteobacteria (58.82%)
17 14044 bp 47.42 66.55 83.82
RTP_01242018_0_2um_scaffold_3634
Class: Betaproteobacteria (66.67%)
3 2706 bp 48.60 66.57 87.58
RTP_01242018_0_2um_scaffold_1055
Class: Betaproteobacteria (64.29%)
14 13350 bp 49.12 67.13 97.19
RTP_01242018_0_2um_scaffold_3182
Species: mine drainage metagenome (66.67%)
3 3105 bp 51.27 67.25 96.52
RTP_01242018_0_2um_scaffold_8099
Class: Betaproteobacteria (50%)
4 1436 bp 48.19 67.27 87.19
RTP_01242018_0_2um_scaffold_981
Class: Betaproteobacteria (61.54%)
13 15497 bp 49.04 67.72 93.95
RTP_01242018_0_2um_scaffold_1263
Species: mine drainage metagenome (60%)
10 10335 bp 46.92 67.76 93.24
RTP_01242018_0_2um_scaffold_7108
Species: RBG_16_Betaproteobacteria_56_24_curated (50%)
2 1567 bp 47.73 67.77 85.77
RTP_01242018_0_2um_scaffold_848
Species: mine drainage metagenome (63.16%)
19 17796 bp 49.87 67.79 96.85
RTP_01242018_0_2um_scaffold_1202
Class: Betaproteobacteria (55.56%)
18 14544 bp 46.57 67.88 94.61
RTP_01242018_0_2um_scaffold_1709
Class: Betaproteobacteria (75%)
8 8943 bp 48.02 67.93 87.22
RTP_01242018_0_2um_scaffold_5566 1 1869 bp 43.29 68.14 48.15
RTP_01242018_0_2um_scaffold_5991
Class: Betaproteobacteria (66.67%)
3 1768 bp 48.30 68.21 90.44
RTP_01242018_0_2um_scaffold_3142
Class: Betaproteobacteria (81.82%)
11 5471 bp 45.15 68.30 87.68
RTP_01242018_0_2um_scaffold_4124
Species: Sulfuricella sp. T08 (50%)
2 2411 bp 49.36 68.50 99.42
RTP_01242018_0_2um_scaffold_607
Class: Betaproteobacteria (62.07%)
29 26741 bp 39.22 68.51 95.42
RTP_01242018_0_2um_scaffold_2528
Species: mine drainage metagenome (100%)
7 4000 bp 47.23 68.55 100.05
RTP_01242018_0_2um_scaffold_2752
Species: mine drainage metagenome (50%)
4 3611 bp 48.77 68.62 98.45
RTP_01242018_0_2um_scaffold_3968
Class: Betaproteobacteria (66.67%)
3 2493 bp 49.14 69.01 97.83
RTP_01242018_0_2um_scaffold_10702
Species: R_Gallionellales_57_47 (100%)
1 1216 bp 47.45 69.20 80.67
RTP_01242018_0_2um_scaffold_5370
Class: Betaproteobacteria (66.67%)
3 1929 bp 45.67 69.28 88.49
Displaying items 301-350 of 364 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.