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RTP_03222018_0_1um_scaffold_717

Search features with annotation key words

Displaying items 1-30 of 85 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RTP_03222018_0_1um_scaffold_717_1
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..1337
DNA (1335bp) protein (445aa)
Probable high affinity sulfate transporter (SulP) id=1329237 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
high affinity sulfate transporter SulP
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_1um_scaffold_717_2
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1334..1990)
DNA (657bp) protein (219aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00037F2D61
nuclease (SNase-like)
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_03222018_0_1um_scaffold_717_3
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1987..3642)
DNA (1656bp) protein (552aa)
DNA repair protein n=1 Tax=Thiobacillus thioparus RepID=UPI000378B863
DNA repair protein RecN
DNA repair protein RecN {ECO:0000256|PIRNR:PIRNR003128}; Recombination protein N {ECO:0000256|PIRNR:PIRNR003128}; Flags: Precursor;; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_03222018_0_1um_scaffold_717_4
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3657..4529)
DNA (873bp) protein (291aa)
NAD kinase (EC:2.7.1.23)
inorganic polyphosphate/ATP-NAD kinase n=1 Tax=Thiobacillus thioparus RepID=UPI00037D0ED5
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_03222018_0_1um_scaffold_717_5
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4664..5680
DNA (1017bp) protein (339aa)
HrcA family transcriptional regulator n=1 Tax=Thiobacillus thioparus RepID=UPI00037282D9
hrcA; heat-inducible transcription repressor
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_03222018_0_1um_scaffold_717_6
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5696..6799
DNA (1104bp) protein (368aa)
hemH; ferrochelatase (EC:4.99.1.1)
ferrochelatase n=1 Tax=Thiobacillus denitrificans RepID=UPI0003825757
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_1um_scaffold_717_7
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7285..7590
DNA (306bp) protein (102aa)
sulfide dehydrogenase (flavocytochrome), cytochrome c subunit (EC:1.-.-.-)
Putative cytochrome c553 id=1340297 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_1um_scaffold_717_8
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7610..8875
DNA (1266bp) protein (422aa)
sulfide dehydrogenase (flavocytochrome), flavoprotein subunit (EC:1.-.-.-)
flavocytochrome C sulfide dehydrogenase n=1 Tax=Thiobacillus denitrificans RepID=UPI000362F2FA
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_1um_scaffold_717_9
GWA2_Gallionellales_59_43_curated, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9082..9519
DNA (438bp) protein (146aa)
Disulphide bond formation protein DsbB n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q221Y4_RHOFD
disulfide bond formation protein DsbB
Tax=GWA2_Gallionellales_59_43_curated
RTP_03222018_0_1um_scaffold_717_10
R_Gallionellales_59_110, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9516..10172
DNA (657bp) protein (219aa)
hypothetical protein n=1 Tax=beta proteobacterium L13 RepID=UPI00037534ED
DSBA oxidoreductase
Tax=RIFCSPLOWO2_02_FULL_Gallionellales_59_110_curated
RTP_03222018_0_1um_scaffold_717_11
R_Burkholderiales_57_36, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10711..12333
DNA (1623bp) protein (541aa)
Type I restriction system adenine methylase n=1 Tax=Synechococcus sp. WH 5701 RepID=A3YTS3_9SYNE
N-6 DNA methylase
Tax=RIFCSPLOWO2_02_FULL_Burkholderiales_57_36_curated
RTP_03222018_0_1um_scaffold_717_12
Brenneria sp. EniD312, Brenneria, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12323..12778
DNA (456bp) protein (152aa)
Restriction modification system DNA specificity domain n=1 Tax=Brenneria sp. EniD312 RepID=G7LQI4_9ENTR
Restriction modification system DNA specificity domain {ECO:0000313|EMBL:EHD22815.1}; TaxID=598467 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Brenneria.;" source="Brenneria sp. EniD312.;"
restriction modification system DNA specificity domain-containing protein
RTP_03222018_0_1um_scaffold_717_13
Burkholderiales bacterium GJ-E10, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12745..13536
DNA (792bp) protein (264aa)
Restriction modification system DNA specificity domain n=1 Tax=delta proteobacterium MLMS-1 RepID=Q1NY79_9DELT
type I restriction-modification system, S subunit
Type I restriction-modification system, S subunit {ECO:0000313|EMBL:BAP87340.1}; TaxID=1469502 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="Burkholderiales bacterium GJ-E10.;"
RTP_03222018_0_1um_scaffold_717_14
CG_Arma_01, Armatimonadetes, Bacteria

Not on your lists

13546..14088
DNA (543bp) protein (181aa)
hypothetical protein n=1 Tax=Rhizobium leguminosarum RepID=UPI000362402A
hypothetical protein
Tax=CG_Arma_01
RTP_03222018_0_1um_scaffold_717_15
CG_Arma_01, Armatimonadetes, Bacteria

Not on your lists

14085..15221
DNA (1137bp) protein (379aa)
hypothetical protein n=1 Tax=Rhizobium leguminosarum RepID=UPI00036FBCC0
hypothetical protein
Tax=CG_Arma_01
RTP_03222018_0_1um_scaffold_717_16
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

15744..16790
DNA (1047bp) protein (349aa)
Virulence protein-like protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XBH7_9BACT
Virulence protein-like protein {ECO:0000313|EMBL:EEF62862.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
virulence protein-like protein
RTP_03222018_0_1um_scaffold_717_17
R_Burkholderiales_57_36, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16787..17668
DNA (882bp) protein (294aa)
hsdR; type I restriction-modification system restriction subunit (EC:3.1.21.3)
Type I restriction-modification system endonuclease n=1 Tax=Synechococcus sp. WH 5701 RepID=A3YTT1_9SYNE
Tax=RIFCSPLOWO2_02_FULL_Burkholderiales_57_36_curated
RTP_03222018_0_1um_scaffold_717_18
R_Burkholderiales_57_36, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17634..19697
DNA (2064bp) protein (688aa)
Type I restriction-modification system endonuclease n=1 Tax=Synechococcus sp. WH 5701 RepID=A3YTT1_9SYNE
type I restriction endonuclease, HsdR family
Tax=RIFCSPLOWO2_02_FULL_Burkholderiales_57_36_curated
RTP_03222018_0_1um_scaffold_717_19
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20111..20629)
DNA (519bp) protein (173aa)
dihydrofolate reductase (EC:1.5.1.3)
diacylglycerol kinase n=1 Tax=Thiobacillus denitrificans RepID=UPI00037EA9BA
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_03222018_0_1um_scaffold_717_20
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20626..21420)
DNA (795bp) protein (265aa)
thymidylate synthase (EC:2.1.1.45)
Thymidylate synthase id=1340301 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_03222018_0_1um_scaffold_717_21
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21433..22290)
DNA (858bp) protein (286aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000364D5A7
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_1um_scaffold_717_22
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22390..23682
DNA (1293bp) protein (431aa)
Cytochrome c n=1 Tax=Beggiatoa alba B18LD RepID=I3CJS9_9GAMM
cytochrome c
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_03222018_0_1um_scaffold_717_23
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23739..24464)
DNA (726bp) protein (242aa)
arginyl-tRNA-protein transferase (EC:2.3.2.8)
arginyl-tRNA-protein transferase n=1 Tax=Thiobacillus denitrificans RepID=UPI000373E421
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_1um_scaffold_717_24
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24702..25478)
DNA (777bp) protein (259aa)
aat; leucyl/phenylalanyl-tRNA--protein transferase (EC:2.3.2.6)
leucyl/phenylalanyl-tRNA--protein transferase n=1 Tax=Thiobacillus denitrificans RepID=UPI00036917B2
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_03222018_0_1um_scaffold_717_25
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25565..26143
DNA (579bp) protein (193aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI000376063F
OmpW family protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_03222018_0_1um_scaffold_717_26
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26228..28723
DNA (2496bp) protein (832aa)
Heavy metal translocating P-type ATPase id=1340305 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
heavy metal translocating P-type ATPase
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_1um_scaffold_717_27
unknown

Not on your lists

comp(28720..28917)
DNA (198bp) protein (66aa)

This feature has no annotations

RTP_03222018_0_1um_scaffold_717_28
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28963..29592
DNA (630bp) protein (210aa)
hypothetical protein; K07396 putative protein-disulfide isomerase id=12493835 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_03222018_0_1um_scaffold_717_29
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29676..30359
DNA (684bp) protein (228aa)
peptidyl-prolyl cis-trans isomerase (EC:5.2.1.8)
Peptidyl-prolyl cis-trans isomerase id=1340309 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_1um_scaffold_717_30
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30434..31294
DNA (861bp) protein (287aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00037D916A
transmembrane ABC transporter permease
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
Displaying items 1-30 of 85 in total

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