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RTP_05232018_0_1um_Betaproteobacteria_48_39

In projects: RTP_05232018_0_1um  |  genome_canada_sulfuriferula  |  SOB_across_mines  |  SOB_across_mines

Consensus taxonomy: Betaproteobacteria  →  Proteobacteria  →  Bacteria

Displaying 44 items
contig # features sequence size GC content (%) Cov Coding Density (%)
RTP_05232018_0_1um_scaffold_44
Class: Betaproteobacteria (56.3%)
357 338586 bp 48.19 39.23 92.80
RTP_05232018_0_1um_scaffold_49
Class: Betaproteobacteria (63.5%)
263 276071 bp 47.50 37.85 94.43
RTP_05232018_0_1um_scaffold_21
Class: Betaproteobacteria (57.59%)
224 217965 bp 47.55 40.31 94.42
RTP_05232018_0_1um_scaffold_84
Phylum: Proteobacteria (54.55%)
209 190121 bp 47.72 37.58 92.04
RTP_05232018_0_1um_scaffold_22
Class: Betaproteobacteria (63.16%)
190 204546 bp 46.17 38.71 90.90
RTP_05232018_0_1um_scaffold_142
Phylum: Proteobacteria (59.09%)
132 119863 bp 46.54 42.89 89.58
RTP_05232018_0_1um_scaffold_91
Class: Betaproteobacteria (60.19%)
108 103391 bp 49.43 40.07 91.30
RTP_05232018_0_1um_scaffold_71
Class: Betaproteobacteria (60.78%)
102 96754 bp 47.96 38.39 92.88
RTP_05232018_0_1um_scaffold_73
Phylum: Proteobacteria (54.12%)
85 96536 bp 48.40 37.72 93.24
RTP_05232018_0_1um_scaffold_150
Class: Betaproteobacteria (62.5%)
64 63888 bp 47.89 38.04 89.79
RTP_05232018_0_1um_scaffold_131
Class: Betaproteobacteria (50.79%)
63 65810 bp 46.58 40.18 96.42
RTP_05232018_0_1um_scaffold_171
Class: Betaproteobacteria (58.73%)
63 70665 bp 47.78 37.45 94.07
RTP_05232018_0_1um_scaffold_181
Class: Betaproteobacteria (71.67%)
60 54381 bp 48.16 37.72 92.71
RTP_05232018_0_1um_scaffold_200
Phylum: Proteobacteria (51.85%)
54 48826 bp 48.05 39.23 90.72
RTP_05232018_0_1um_scaffold_209
Species: Halothiobacillus neapolitanus (50%)
46 47763 bp 48.42 36.82 90.72
RTP_05232018_0_1um_scaffold_496
Class: Betaproteobacteria (85.71%)
42 41570 bp 48.25 39.52 93.75
RTP_05232018_0_1um_scaffold_288
Class: Betaproteobacteria (80.49%)
41 36022 bp 47.98 37.44 90.42
RTP_05232018_0_1um_scaffold_564
Class: Betaproteobacteria (79.41%)
34 21951 bp 45.75 40.56 96.71
RTP_05232018_0_1um_scaffold_286
Class: Betaproteobacteria (62.5%)
32 38844 bp 48.01 36.62 90.84
RTP_05232018_0_1um_scaffold_324
Class: Betaproteobacteria (61.29%)
31 33133 bp 48.77 37.80 96.38
RTP_05232018_0_1um_scaffold_326
Phylum: Proteobacteria (63.33%)
30 34070 bp 50.71 36.89 90.47
RTP_05232018_0_1um_scaffold_433
Class: Betaproteobacteria (51.72%)
29 26787 bp 47.92 40.32 91.25
RTP_05232018_0_1um_scaffold_473
Class: Betaproteobacteria (50%)
26 26069 bp 49.68 39.76 90.37
RTP_05232018_0_1um_scaffold_524
Class: Betaproteobacteria (60.87%)
23 23197 bp 47.26 42.08 91.02
RTP_05232018_0_1um_scaffold_736
Class: Betaproteobacteria (68.18%)
22 17398 bp 51.54 37.95 91.39
RTP_05232018_0_1um_scaffold_868
Class: Betaproteobacteria (56.25%)
16 14552 bp 48.30 41.71 91.74
RTP_05232018_0_1um_scaffold_824
Class: Betaproteobacteria (92.86%)
14 15479 bp 45.39 41.75 93.42
RTP_05232018_0_1um_scaffold_1031
Class: Betaproteobacteria (61.54%)
13 12211 bp 50.68 35.84 95.86
RTP_05232018_0_1um_scaffold_681
Phylum: Proteobacteria (53.85%)
13 18578 bp 49.23 39.48 94.68
RTP_05232018_0_1um_scaffold_2042
Class: Betaproteobacteria (63.64%)
11 10427 bp 48.71 38.32 92.10
RTP_05232018_0_1um_scaffold_2066
Phylum: Proteobacteria (72.73%)
11 6504 bp 46.80 36.58 57.20
RTP_05232018_0_1um_scaffold_1843
Phylum: Proteobacteria (54.55%)
11 9894 bp 43.05 40.57 86.29
RTP_05232018_0_1um_scaffold_4730
Phylum: Proteobacteria (50%)
6 3295 bp 43.92 35.10 91.05
RTP_05232018_0_1um_scaffold_5648
Phylum: Proteobacteria (80%)
5 2856 bp 51.23 33.61 56.72
RTP_05232018_0_1um_scaffold_3783
Order: Burkholderiales (60%)
5 5270 bp 49.05 35.21 97.40
RTP_05232018_0_1um_scaffold_5238
Class: Betaproteobacteria (80%)
5 3033 bp 47.84 37.39 97.92
RTP_05232018_0_1um_scaffold_4756
Class: Betaproteobacteria (60%)
5 3278 bp 47.86 38.12 71.20
RTP_05232018_0_1um_scaffold_9554
Phylum: Proteobacteria (66.67%)
3 1881 bp 47.42 36.36 79.11
RTP_05232018_0_1um_scaffold_7519
Class: Betaproteobacteria (66.67%)
3 2276 bp 48.02 33.88 76.32
RTP_05232018_0_1um_scaffold_6195
Species: Bosea sp. LC85 (66.67%)
3 2652 bp 51.66 33.99 60.07
RTP_05232018_0_1um_scaffold_19835
Species: Rheinheimera sp. A13L (50%)
2 1073 bp 49.21 38.44 71.58
RTP_05232018_0_1um_scaffold_13027
Species: Cupriavidus basilensis (50%)
2 1474 bp 45.39 39.89 90.16
RTP_05232018_0_1um_scaffold_7208
Species: CG_Gallio_03 (50%)
2 2352 bp 53.15 34.31 98.47
RTP_05232018_0_1um_scaffold_14164
Species: Cupriavidus basilensis (50%)
2 1381 bp 43.66 37.26 84.94
Displaying 44 items

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.