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RTP_05232018_0_1um_scaffold_131

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Displaying items 1-30 of 63 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RTP_05232018_0_1um_scaffold_131_1
unknown

Not on your lists

comp(1..93)
DNA (93bp) protein (31aa)
fabH1; 3-oxoacyl-ACP synthase (EC:2.3.1.41)
RTP_05232018_0_1um_scaffold_131_2

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comp(94..888)
DNA (795bp) protein (265aa)
Fatty acid/phospholipid synthesis protein PlsX n=1 Tax=mine drainage metagenome RepID=E6QQN2_9ZZZZ
Fatty acid/phospholipid synthesis protein PlsX {ECO:0000313|EMBL:CBI09553.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
glycerol-3-phosphate acyltransferase PlsX
RTP_05232018_0_1um_scaffold_131_3
Sulfuricella denitrificans, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(839..1105)
DNA (267bp) protein (89aa)
Phosphate acyltransferase {ECO:0000256|HAMAP-Rule:MF_00019, ECO:0000256|SAAS:SAAS00054336}; EC=2.3.1.n2 {ECO:0000256|HAMAP-Rule:MF_00019, ECO:0000256|SAAS:SAAS00054327};; Acyl-ACP phosphotransacylase {ECO:0000256|HAMAP-Rule:MF_00019}; Acyl-[acyl-carrier-protein]--phosphate acyltransferase {ECO:0000256|HAMAP-Rule:MF_00019}; Phosphate-acyl-ACP acyltransferase {ECO:0000256|HAMAP-Rule:MF_00019}; TaxID=1163617 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella denitrificans skB26.;"
phosphate acyltransferase n=1 Tax=Methylophilus RepID=UPI0003809D26
plsX; fatty acid/phospholipid synthesis protein plsx
RTP_05232018_0_1um_scaffold_131_4

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comp(1215..1394)
DNA (180bp) protein (60aa)
50S ribosomal protein L32 n=1 Tax=mine drainage metagenome RepID=E6QQN1_9ZZZZ
50S ribosomal protein L32 {ECO:0000313|EMBL:CBI09552.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
rpmF; 50S ribosomal protein L32
RTP_05232018_0_1um_scaffold_131_5
Neisseria polysaccharea, Neisseria, Neisseriales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(1414..1908)
DNA (495bp) protein (165aa)
Putative ACR, COG1399 n=1 Tax=Neisseria polysaccharea ATCC 43768 RepID=E2PE10_NEIPO
hypothetical protein
Putative ACR, COG1399 {ECO:0000313|EMBL:EFH23446.1}; TaxID=546267 species="Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Neisseriaceae; Neisseria.;" source="Neisseria polysaccharea ATCC 43768.;"
RTP_05232018_0_1um_scaffold_131_6

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1963..3381
DNA (1419bp) protein (473aa)
Acetyl-CoA carboxylase subunit (Biotin carboxylase subunit) {ECO:0000313|EMBL:CBI09551.1}; EC=6.4.1.2 {ECO:0000313|EMBL:CBI09551.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
pyruvate carboxylase subunit A (EC:6.3.4.14)
Acetyl-CoA carboxylase subunit (Biotin carboxylase subunit) n=1 Tax=mine drainage metagenome RepID=E6QQN0_9ZZZZ
RTP_05232018_0_1um_scaffold_131_7

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3413..5260
DNA (1848bp) protein (616aa)
Oxaloacetate decarboxylase alpha chain {ECO:0000313|EMBL:CBI09550.1}; EC=4.1.1.3 {ECO:0000313|EMBL:CBI09550.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
pyruvate carboxylase subunit B (EC:4.1.1.3)
Oxaloacetate decarboxylase alpha chain n=1 Tax=mine drainage metagenome RepID=E6QQM9_9ZZZZ
RTP_05232018_0_1um_scaffold_131_8
Sulfuricella sp. T08, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5267..5860
DNA (594bp) protein (198aa)
Maf-like protein SCD_n01541 n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6AC85_9PROT
Maf-like protein SCT_2662 {ECO:0000256|HAMAP-Rule:MF_00528}; TaxID=1632857 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella sp. T08.;"
maf protein, putative
RTP_05232018_0_1um_scaffold_131_9
RBG_16_Betaproteobacteria_58_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5898..7958)
DNA (2061bp) protein (687aa)
polyphosphate kinase (EC:2.7.4.1); K00937 polyphosphate kinase [EC:2.7.4.1] id=12497277 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
polyphosphate kinase (EC:2.7.4.1)
Tax=RBG_16_Betaproteobacteria_58_11_curated
RTP_05232018_0_1um_scaffold_131_10
RBG_16_Betaproteobacteria_58_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8015..8635
DNA (621bp) protein (207aa)
CHAD domain-containing protein n=1 Tax=Marinobacterium stanieri RepID=UPI000255993E
adenylate cyclase
Tax=RBG_16_Betaproteobacteria_58_11_curated
RTP_05232018_0_1um_scaffold_131_11

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8680..9132
DNA (453bp) protein (151aa)
Phosphohistidine phosphatase, SixA n=1 Tax=mine drainage metagenome RepID=E6QTK4_9ZZZZ
Phosphohistidine phosphatase, SixA {ECO:0000313|EMBL:CBI10576.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
phosphohistidine phosphatase SixA
RTP_05232018_0_1um_scaffold_131_12
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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9226..9675
DNA (450bp) protein (150aa)
Dihydroneopterin triphosphate pyrophosphatase n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2YBG0_NITMU
ntpA; dATP pyrophosphohydrolase
Dihydroneopterin triphosphate pyrophosphatase {ECO:0000313|EMBL:ABB73911.1}; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849).;"
RTP_05232018_0_1um_scaffold_131_13
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9662..10009
DNA (348bp) protein (116aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00037CF2A1
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_05232018_0_1um_scaffold_131_14
Thiothrix nivea, Thiothrix, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10110..12602)
DNA (2493bp) protein (831aa)
Alpha-1,4 glucan phosphorylase {ECO:0000256|RuleBase:RU000587}; EC=2.4.1.1 {ECO:0000256|RuleBase:RU000587};; TaxID=870187 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thiothrix.;" source="Thiothrix nivea DSM 5205.;"
phosphorylase (EC:2.4.1.1)
Phosphorylase n=1 Tax=Thiothrix nivea DSM 5205 RepID=I3BUJ9_9GAMM
RTP_05232018_0_1um_scaffold_131_15

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comp(12599..14074)
DNA (1476bp) protein (492aa)
Glycogen synthase {ECO:0000313|EMBL:CBI10948.1}; EC=2.4.1.21 {ECO:0000313|EMBL:CBI10948.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
Glycogen synthase n=1 Tax=mine drainage metagenome RepID=E6QUM5_9ZZZZ
glycogen/starch synthase, ADP-glucose type
RTP_05232018_0_1um_scaffold_131_16
Thiothrix nivea, Thiothrix, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14076..16244)
DNA (2169bp) protein (723aa)
1,4-alpha-glucan branching enzyme GlgB {ECO:0000256|HAMAP-Rule:MF_00685}; EC=2.4.1.18 {ECO:0000256|HAMAP-Rule:MF_00685};; 1,4-alpha-D-glucan:1,4-alpha-D-glucan 6-glucosyl-transferase {ECO:0000256|HAMAP-Rule:MF_00685}; Alpha-(1->4)-glucan branching enzyme {ECO:0000256|HAMAP-Rule:MF_00685}; Glycogen branching enzyme {ECO:0000256|HAMAP-Rule:MF_00685}; TaxID=870187 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thiothrix.;" source="Thiothrix nivea DSM 5205.;"
glycogen branching enzyme (EC:2.4.1.18)
1,4-alpha-glucan branching enzyme GlgB n=1 Tax=Thiothrix nivea DSM 5205 RepID=I3BUK1_9GAMM
RTP_05232018_0_1um_scaffold_131_17

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comp(16244..17602)
DNA (1359bp) protein (453aa)
4-alpha-glucanotransferase (Amylomaltase) (Disproportionating enzyme) (D-enzyme) {ECO:0000313|EMBL:CBI10950.1}; EC=2.4.1.25 {ECO:0000313|EMBL:CBI10950.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
4-alpha-glucanotransferase (EC:2.4.1.25)
4-alpha-glucanotransferase (Amylomaltase) (Disproportionating enzyme) (D-enzyme) n=1 Tax=mine drainage metagenome RepID=E6QUM7_9ZZZZ
RTP_05232018_0_1um_scaffold_131_18
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17599..19320)
DNA (1722bp) protein (574aa)
Glycosyl hydrolase family 57 id=1332708 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
glycosyl hydrolase
Tax=GWE1_Thiobacillus_62_9_curated
RTP_05232018_0_1um_scaffold_131_19

Not on your lists

comp(19338..20633)
DNA (1296bp) protein (432aa)
Glucose-1-phosphate adenylyltransferase (ADP-glucose synthase) (ADP-glucose pyrophosphorylase) (ADPGlc PPase) {ECO:0000313|EMBL:CBI10952.1}; EC=2.7.7.27 {ECO:0000313|EMBL:CBI10952.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
glgC; glucose-1-phosphate adenylyltransferase (EC:2.7.7.27)
Glucose-1-phosphate adenylyltransferase (ADP-glucose synthase) (ADP-glucose pyrophosphorylase) (ADPGlc PPase) n=1 Tax=mine drainage metagenome RepID=E6QUM9_9ZZZZ
RTP_05232018_0_1um_scaffold_131_20
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20750..21772)
DNA (1023bp) protein (341aa)
glucokinase (EC:2.7.1.2)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI000368649C
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_05232018_0_1um_scaffold_131_21
GWA2_Gallionellales_60_18_curated, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

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21959..22195
DNA (237bp) protein (79aa)
hypothetical protein n=1 Tax=Calothrix sp. PCC 7103 RepID=UPI00036A6734
FeoA family protein
Tax=GWA2_Gallionellales_60_18_curated
RTP_05232018_0_1um_scaffold_131_22
CG_Hydro_01, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22192..23979
DNA (1788bp) protein (596aa)
Ferrous iron transport protein B n=1 Tax=endosymbiont of unidentified scaly snail isolate Monju RepID=S6BRX9_9GAMM
ferrous iron transport protein B
Tax=CG_Hydro_01
RTP_05232018_0_1um_scaffold_131_23
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24055..24660
DNA (606bp) protein (202aa)
Probable exbB-like biopolymer transport n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SIR2_THIDA
exbB-like biopolymer transport
Probable exbB-like biopolymer transport {ECO:0000313|EMBL:AAZ97463.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_05232018_0_1um_scaffold_131_24
Gallionella capsiferriformans, Gallionella, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24672..25088
DNA (417bp) protein (139aa)
Biopolymer transport protein ExbD/TolR n=1 Tax=Gallionella capsiferriformans (strain ES-2) RepID=D9SD13_GALCS
biopolymer transport protein ExbD/TolR
Biopolymer transport protein ExbD/TolR {ECO:0000313|EMBL:ADL54702.1}; TaxID=395494 species="Bacteria; Proteobacteria; Betaproteobacteria; Gallionellales; Gallionellaceae; Gallionella.;" source="Gallionella capsiferriformans (strain ES-2) (Gallionella ferruginea; capsiferriformans (strain ES-2)).;"
RTP_05232018_0_1um_scaffold_131_25
Thiobacillus prosperus, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25129..26220
DNA (1092bp) protein (364aa)
hypothetical protein n=1 Tax=Thioalkalivibrio sp. ALJ17 RepID=UPI00036441BA
Uncharacterized protein {ECO:0000313|EMBL:KFZ91358.1}; TaxID=160660 species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="Thiobacillus prosperus.;"
hypothetical protein
RTP_05232018_0_1um_scaffold_131_26
Methylovorus glucosotrophus, Methylovorus, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26214..27218
DNA (1005bp) protein (335aa)
Tetraacyldisaccharide 4'-kinase {ECO:0000256|HAMAP-Rule:MF_00409, ECO:0000256|SAAS:SAAS00093884}; EC=2.7.1.130 {ECO:0000256|HAMAP-Rule:MF_00409, ECO:0000256|SAAS:SAAS00093878};; Lipid A 4'-kinase {ECO:0000256|HAMAP-Rule:MF_00409}; TaxID=582744 species="Bacteria; Proteobacteria; Betaproteobacteria; Methylophilales; Methylophilaceae; Methylovorus.;" source="Methylovorus glucosetrophus (strain SIP3-4).;"
Tetraacyldisaccharide 4'-kinase n=1 Tax=Methylovorus sp. (strain MP688) RepID=E4QJS2_METS6
lpxK; tetraacyldisaccharide 4'-kinase
RTP_05232018_0_1um_scaffold_131_27
BJP_IG2158_Methylococcales_50_91, Methylococcales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27211..27390
DNA (180bp) protein (60aa)
UPF0434 protein n=1 Tax=uncultured bacterium 9F08 RepID=D2XIQ7_9BACT
conserved hypothetical protein
Tax=BJP_IG2158_Methylococcales_50_91
RTP_05232018_0_1um_scaffold_131_28
BJP_S1_SUB10_Methylophilales_55_32, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

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27390..28151
DNA (762bp) protein (254aa)
3-deoxy-manno-octulosonate cytidylyltransferase (EC:2.7.7.38)
3-deoxy-manno-octulosonate cytidylyltransferase n=1 Tax=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) RepID=KDSB_METFK
Tax=BJP_S1_SUB10_Methylophilales_55_32
RTP_05232018_0_1um_scaffold_131_29
Sulfuricella denitrificans, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28158..28814
DNA (657bp) protein (219aa)
adk; adenylate kinase (EC:2.7.4.3)
Adenylate kinase {ECO:0000256|HAMAP-Rule:MF_00235, ECO:0000256|RuleBase:RU003331}; Short=AK {ECO:0000256|HAMAP-Rule:MF_00235};; EC=2.7.4.3 {ECO:0000256|HAMAP-Rule:MF_00235, ECO:0000256|RuleBase:RU003331};; ATP-AMP transphosphorylase {ECO:0000256|HAMAP-Rule:MF_00235}; ATP:AMP phosphotransferase {ECO:0000256|HAMAP-Rule:MF_00235}; Adenylate monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_00235}; TaxID=1163617 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella denitrificans skB26.;"
adenylate kinase n=1 Tax=Thiobacillus thioparus RepID=UPI0003760FF0
RTP_05232018_0_1um_scaffold_131_30
RBG_16_Betaproteobacteria_58_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29045..30388
DNA (1344bp) protein (448aa)
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6AJY5_9PROT
rumA; 23S rRNA 5-methyluridine methyltransferase
Tax=RBG_16_Betaproteobacteria_58_11_curated
Displaying items 1-30 of 63 in total

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