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RTP_07252018_0_1um_Bacteroidetes_45_6

In projects: RTP_07252018_0_1um  |  SOB_across_mines  |  SOB_across_mines

Consensus taxonomy: Bacteroidetes  →  Bacteria

Displaying items 251-300 of 632 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
RTP_07252018_0_1um_scaffold_10542
Species: Niastella koreensis (50%)
4 4001 bp 47.11 5.77 94.93
RTP_07252018_0_1um_scaffold_10320
Phylum: Bacteroidetes (80%)
5 4056 bp 44.50 5.77 87.87
RTP_07252018_0_1um_scaffold_17439
Order: Sphingobacteriales (66.67%)
3 2881 bp 47.62 5.78 81.53
RTP_07252018_0_1um_scaffold_17445
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (50%)
2 2881 bp 45.30 5.78 82.78
RTP_07252018_0_1um_scaffold_16128
Phylum: Bacteroidetes (100%)
3 3035 bp 48.04 5.78 94.20
RTP_07252018_0_1um_scaffold_40886
Species: Solitalea canadensis (100%)
1 1608 bp 46.83 5.78 100.00
RTP_07252018_0_1um_scaffold_6346
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (50%)
6 5652 bp 44.62 5.79 92.09
RTP_07252018_0_1um_scaffold_15398
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (100%)
1 3131 bp 46.60 5.80 95.91
RTP_07252018_0_1um_scaffold_13675
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (50%)
4 3386 bp 45.95 5.80 83.46
RTP_07252018_0_1um_scaffold_24388
Genus: Flavobacterium (50%)
4 2301 bp 43.68 5.80 94.92
RTP_07252018_0_1um_scaffold_5550
Order: Sphingobacteriales (66.67%)
9 6177 bp 44.26 5.80 92.04
RTP_07252018_0_1um_scaffold_38443
Species: Polaribacter sp. Hel1_85 (50%)
2 1681 bp 41.70 5.80 80.49
RTP_07252018_0_1um_scaffold_31933
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (66.67%)
3 1913 bp 42.29 5.80 90.17
RTP_07252018_0_1um_scaffold_42045
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (100%)
2 1575 bp 44.13 5.81 86.86
RTP_07252018_0_1um_scaffold_23085
Species: Niastella koreensis (50%)
4 3563 bp 42.52 5.81 73.45
RTP_07252018_0_1um_scaffold_15440
Phylum: Bacteroidetes (80%)
5 3126 bp 43.79 5.81 81.83
RTP_07252018_0_1um_scaffold_4911
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (71.43%)
7 6707 bp 44.43 5.81 91.56
RTP_07252018_0_1um_scaffold_9699
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (100%)
3 4227 bp 46.01 5.82 93.19
RTP_07252018_0_1um_scaffold_20868
Order: Sphingobacteriales (100%)
3 2551 bp 41.63 5.82 87.73
RTP_07252018_0_1um_scaffold_6749
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (66.67%)
9 5413 bp 42.32 5.82 84.91
RTP_07252018_0_1um_scaffold_11491
Order: Sphingobacteriales (66.67%)
3 3780 bp 45.90 5.83 95.48
RTP_07252018_0_1um_scaffold_3729
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (75%)
8 8158 bp 44.84 5.83 86.27
RTP_07252018_0_1um_scaffold_12251
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (75%)
4 3630 bp 46.36 5.83 95.45
RTP_07252018_0_1um_scaffold_9960
Phylum: Bacteroidetes (57.14%)
7 4155 bp 45.94 5.85 90.04
RTP_07252018_0_1um_scaffold_3927
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (70%)
10 7888 bp 46.40 5.86 89.76
RTP_07252018_0_1um_scaffold_35764
Order: Sphingobacteriales (66.67%)
3 1767 bp 43.80 5.86 99.49
RTP_07252018_0_1um_scaffold_23587
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (75%)
4 2356 bp 44.65 5.86 97.79
RTP_07252018_0_1um_scaffold_39863
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (80%)
5 1638 bp 45.18 5.86 83.88
RTP_07252018_0_1um_scaffold_7679
Species: Niastella koreensis (66.67%)
3 4958 bp 42.74 5.87 96.93
RTP_07252018_0_1um_scaffold_7256
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (100%)
6 5160 bp 43.68 5.87 89.13
RTP_07252018_0_1um_scaffold_22896
Species: Flavihumibacter solisilvae (50%)
2 2400 bp 46.13 5.88 88.38
RTP_07252018_0_1um_scaffold_11101
Phylum: Bacteroidetes (80%)
5 4512 bp 46.37 5.88 87.39
RTP_07252018_0_1um_scaffold_13774
Phylum: Bacteroidetes (80%)
5 3369 bp 42.62 5.88 82.99
RTP_07252018_0_1um_scaffold_5598
Phylum: Bacteroidetes (100%)
7 6151 bp 45.29 5.88 88.38
RTP_07252018_0_1um_scaffold_15541
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (60%)
5 3114 bp 45.73 5.88 91.04
RTP_07252018_0_1um_scaffold_13517
Phylum: Bacteroidetes (57.14%)
7 3413 bp 45.59 5.89 90.98
RTP_07252018_0_1um_scaffold_7062
Phylum: Bacteroidetes (50%)
6 5250 bp 45.35 5.89 95.09
RTP_07252018_0_1um_scaffold_9297
Order: Sphingobacteriales (50%)
4 4348 bp 41.90 5.90 91.28
RTP_07252018_0_1um_scaffold_17301
Species: Solitalea canadensis (50%)
2 2897 bp 45.63 5.90 98.27
RTP_07252018_0_1um_scaffold_7997
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (71.43%)
7 4824 bp 43.80 5.91 92.60
RTP_07252018_0_1um_scaffold_7823
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (75%)
8 9161 bp 44.34 5.91 87.92
RTP_07252018_0_1um_scaffold_5470
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (71.43%)
7 6232 bp 44.88 5.92 90.84
RTP_07252018_0_1um_scaffold_21741
Order: Sphingobacteriales (66.67%)
3 2483 bp 44.06 5.92 93.88
RTP_07252018_0_1um_scaffold_4628
Phylum: Bacteroidetes (100%)
3 7724 bp 42.01 5.92 90.54
RTP_07252018_0_1um_scaffold_14626
Phylum: Bacteroidetes (71.43%)
7 5393 bp 43.65 5.92 92.45
RTP_07252018_0_1um_scaffold_27434
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (100%)
3 2126 bp 46.10 5.93 97.08
RTP_07252018_0_1um_scaffold_10980
Order: Sphingobacteriales (100%)
3 3894 bp 44.48 5.93 95.69
RTP_07252018_0_1um_scaffold_14640
Species: Niastella koreensis (50%)
4 3236 bp 45.52 5.93 98.73
RTP_07252018_0_1um_scaffold_5866
Phylum: Bacteroidetes (100%)
5 7914 bp 42.99 5.93 94.92
RTP_07252018_0_1um_scaffold_17465
Species: Niastella koreensis (100%)
2 2879 bp 47.86 5.94 83.78
Displaying items 251-300 of 632 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.