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RTP_07252018_0_1um_Bacteroidetes_45_6

In projects: RTP_07252018_0_1um  |  SOB_across_mines  |  SOB_across_mines

Consensus taxonomy: Bacteroidetes  →  Bacteria

Displaying items 601-632 of 632 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
RTP_07252018_0_1um_scaffold_12270
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (100%)
2 3626 bp 45.53 7.40 99.86
RTP_07252018_0_1um_scaffold_7233
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (50%)
4 5170 bp 44.26 7.40 68.59
RTP_07252018_0_1um_scaffold_5357
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (72.73%)
11 10372 bp 44.48 7.42 90.42
RTP_07252018_0_1um_scaffold_6452
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (100%)
6 5589 bp 45.27 7.43 85.51
RTP_07252018_0_1um_scaffold_12174
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (75%)
4 3642 bp 46.05 7.45 95.06
RTP_07252018_0_1um_scaffold_33627
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (100%)
2 1845 bp 45.31 7.48 82.93
RTP_07252018_0_1um_scaffold_9183
Phylum: Bacteroidetes (71.43%)
7 4393 bp 43.87 7.51 85.61
RTP_07252018_0_1um_scaffold_4429
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (55.56%)
9 7206 bp 44.95 7.51 84.80
RTP_07252018_0_1um_scaffold_42828
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (66.67%)
3 1554 bp 44.53 7.53 91.70
RTP_07252018_0_1um_scaffold_10617
Phylum: Bacteroidetes (66.67%)
3 5845 bp 44.88 7.54 79.09
RTP_07252018_0_1um_scaffold_15592
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (50%)
6 3107 bp 44.90 7.58 58.22
RTP_07252018_0_1um_scaffold_29225
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (100%)
1 2035 bp 43.05 7.59 67.37
RTP_07252018_0_1um_scaffold_2480
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (58.33%)
12 11019 bp 43.82 7.61 85.00
RTP_07252018_0_1um_scaffold_20790
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (75%)
4 2559 bp 45.10 7.62 96.95
RTP_07252018_0_1um_scaffold_4835
Species: Niastella koreensis (50%)
4 6775 bp 43.22 7.62 89.40
RTP_07252018_0_1um_scaffold_10176
Species: Niastella koreensis (57.14%)
7 6975 bp 44.52 7.63 88.82
RTP_07252018_0_1um_scaffold_3966
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (100%)
7 7831 bp 46.10 7.64 94.13
RTP_07252018_0_1um_scaffold_5968
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (87.5%)
8 9668 bp 45.58 7.66 91.04
RTP_07252018_0_1um_scaffold_18000
Phylum: Bacteroidetes (100%)
3 2821 bp 46.83 7.66 94.86
RTP_07252018_0_1um_scaffold_28193
Species: Flavobacterium sp. F52 (50%)
2 4077 bp 47.04 7.69 84.25
RTP_07252018_0_1um_scaffold_31335
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (50%)
4 1938 bp 44.17 7.82 92.41
RTP_07252018_0_1um_scaffold_2435
Phylum: Bacteroidetes (61.54%)
13 11148 bp 45.52 7.84 78.77
RTP_07252018_0_1um_scaffold_13372
Species: Pedobacter heparinus (50%)
4 3437 bp 45.21 7.90 97.59
RTP_07252018_0_1um_scaffold_8747
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (100%)
2 4539 bp 45.21 7.96 95.84
RTP_07252018_0_1um_scaffold_40748
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (50%)
2 1613 bp 46.68 8.00 90.20
RTP_07252018_0_1um_scaffold_23029
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (100%)
3 2392 bp 44.61 8.03 91.18
RTP_07252018_0_1um_scaffold_6003
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (75%)
8 5858 bp 44.90 8.27 90.65
RTP_07252018_0_1um_scaffold_18560
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (50%)
4 2762 bp 45.87 8.36 94.17
RTP_07252018_0_1um_scaffold_31990
Species: Sphingobacterium sp. ML3W (50%)
2 1911 bp 47.51 8.63 89.48
RTP_07252018_0_1um_scaffold_23376
Phylum: Bacteroidetes (66.67%)
3 2370 bp 51.94 9.68 65.32
RTP_07252018_0_1um_scaffold_12386
Species: Niastella koreensis (66.67%)
3 3603 bp 45.13 10.03 73.36
RTP_07252018_0_1um_scaffold_7509
Order: Sphingobacteriales (57.14%)
7 6088 bp 44.56 11.73 77.73
Displaying items 601-632 of 632 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.