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RTP_07252018_0_1um_Bacteroidetes_45_6

In projects: RTP_07252018_0_1um  |  SOB_across_mines  |  SOB_across_mines

Consensus taxonomy: Bacteroidetes  →  Bacteria

Displaying items 551-600 of 632 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
RTP_07252018_0_1um_scaffold_12321
Phylum: Bacteroidetes (57.14%)
7 3617 bp 42.38 6.93 89.83
RTP_07252018_0_1um_scaffold_11001
Species: Niastella koreensis (100%)
2 3890 bp 43.93 6.94 99.79
RTP_07252018_0_1um_scaffold_6482
Genus: Flavobacterium (50%)
4 5568 bp 44.11 6.95 97.04
RTP_07252018_0_1um_scaffold_20665
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (66.67%)
3 2569 bp 44.92 6.95 97.51
RTP_07252018_0_1um_scaffold_10981
Phylum: Bacteroidetes (85.71%)
7 3894 bp 41.99 6.97 97.30
RTP_07252018_0_1um_scaffold_32960
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (50%)
2 1870 bp 43.80 6.98 78.45
RTP_07252018_0_1um_scaffold_1915
Order: Sphingobacteriales (50%)
18 16748 bp 45.23 6.98 89.22
RTP_07252018_0_1um_scaffold_11015
Species: Runella slithyformis (50%)
4 3886 bp 47.35 6.99 93.10
RTP_07252018_0_1um_scaffold_3201
Phylum: Bacteroidetes (60%)
15 16567 bp 44.47 7.03 88.31
RTP_07252018_0_1um_scaffold_3042
Phylum: Bacteroidetes (100%)
12 10802 bp 44.08 7.03 88.76
RTP_07252018_0_1um_scaffold_23693
Phylum: Bacteroidetes (66.67%)
3 2348 bp 45.14 7.03 79.34
RTP_07252018_0_1um_scaffold_10388
Order: Sphingobacteriales (57.14%)
7 5287 bp 43.37 7.04 96.07
RTP_07252018_0_1um_scaffold_43345
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (100%)
2 2875 bp 42.19 7.04 82.43
RTP_07252018_0_1um_scaffold_8101
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (80%)
5 4790 bp 40.92 7.05 98.46
RTP_07252018_0_1um_scaffold_7511
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (70%)
10 7783 bp 44.57 7.05 91.35
RTP_07252018_0_1um_scaffold_14667
Phylum: Bacteroidetes (50%)
4 3234 bp 44.50 7.05 96.57
RTP_07252018_0_1um_scaffold_7500
Phylum: Bacteroidetes (85.71%)
7 5032 bp 45.35 7.06 91.69
RTP_07252018_0_1um_scaffold_12022
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (66.67%)
3 3671 bp 45.49 7.07 95.21
RTP_07252018_0_1um_scaffold_14171
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (50%)
4 3308 bp 46.16 7.07 96.22
RTP_07252018_0_1um_scaffold_19025
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (66.67%)
3 2715 bp 44.46 7.07 91.49
RTP_07252018_0_1um_scaffold_6364
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (83.33%)
6 5644 bp 45.92 7.07 83.29
RTP_07252018_0_1um_scaffold_13423
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (100%)
7 6630 bp 45.22 7.08 87.47
RTP_07252018_0_1um_scaffold_4629
Order: Cytophagales (50%)
4 6989 bp 44.34 7.08 92.50
RTP_07252018_0_1um_scaffold_4615
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (66.67%)
12 7007 bp 45.54 7.09 86.23
RTP_07252018_0_1um_scaffold_20810
Order: Cytophagales (50%)
4 2557 bp 39.97 7.10 88.23
RTP_07252018_0_1um_scaffold_30800
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (100%)
2 1964 bp 46.18 7.10 94.09
RTP_07252018_0_1um_scaffold_17548
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (66.67%)
3 2870 bp 43.07 7.11 100.14
RTP_07252018_0_1um_scaffold_5483
Phylum: Bacteroidetes (82.35%)
17 11899 bp 42.47 7.14 80.40
RTP_07252018_0_1um_scaffold_3888
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (100%)
7 7940 bp 46.06 7.14 87.02
RTP_07252018_0_1um_scaffold_9935
Phylum: Bacteroidetes (71.43%)
7 4162 bp 44.76 7.14 81.52
RTP_07252018_0_1um_scaffold_7033
Phylum: Bacteroidetes (75%)
8 5264 bp 47.00 7.15 93.69
RTP_07252018_0_1um_scaffold_6953
Phylum: Bacteroidetes (83.33%)
12 5303 bp 44.99 7.16 84.63
RTP_07252018_0_1um_scaffold_4901
Phylum: Bacteroidetes (100%)
7 6717 bp 46.23 7.17 95.44
RTP_07252018_0_1um_scaffold_3135
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (84.62%)
13 14371 bp 46.93 7.20 86.97
RTP_07252018_0_1um_scaffold_20600
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (66.67%)
3 2575 bp 47.42 7.22 78.76
RTP_07252018_0_1um_scaffold_33036
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (50%)
2 1868 bp 38.76 7.23 65.85
RTP_07252018_0_1um_scaffold_9244
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (50%)
6 5748 bp 44.35 7.25 86.74
RTP_07252018_0_1um_scaffold_4193
Phylum: Bacteroidetes (100%)
9 7530 bp 43.63 7.27 91.87
RTP_07252018_0_1um_scaffold_7209
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (75%)
4 7936 bp 46.41 7.28 85.36
RTP_07252018_0_1um_scaffold_5754
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (83.33%)
6 6031 bp 46.89 7.29 87.55
RTP_07252018_0_1um_scaffold_19215
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (50%)
2 2695 bp 44.27 7.29 94.73
RTP_07252018_0_1um_scaffold_2852
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (80%)
15 12294 bp 44.22 7.30 88.21
RTP_07252018_0_1um_scaffold_1436
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (55%)
20 22194 bp 45.12 7.31 92.28
RTP_07252018_0_1um_scaffold_42066
Phylum: Bacteroidetes (66.67%)
3 1575 bp 45.65 7.33 90.86
RTP_07252018_0_1um_scaffold_18457
Order: Cytophagales (50%)
4 2774 bp 44.52 7.35 88.57
RTP_07252018_0_1um_scaffold_7925
Phylum: Bacteroidetes (62.5%)
8 8719 bp 47.21 7.36 94.00
RTP_07252018_0_1um_scaffold_3835
Phylum: Bacteroidetes (80%)
10 8004 bp 45.63 7.38 92.80
RTP_07252018_0_1um_scaffold_1534
Phylum: Bacteroidetes (86.67%)
15 16848 bp 44.46 7.39 90.69
RTP_07252018_0_1um_scaffold_9311
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (60%)
5 4345 bp 40.67 7.39 88.72
RTP_07252018_0_1um_scaffold_3864
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (75%)
8 7975 bp 39.92 7.39 94.12
Displaying items 551-600 of 632 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.