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RTP_07252018_0_1um_Bacteroidetes_45_6

In projects: RTP_07252018_0_1um  |  SOB_across_mines  |  SOB_across_mines

Consensus taxonomy: Bacteroidetes  →  Bacteria

Displaying items 401-450 of 632 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
RTP_07252018_0_1um_scaffold_18482
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (100%)
4 2771 bp 44.50 6.28 95.92
RTP_07252018_0_1um_scaffold_14550
Species: Pedobacter glucosidilyticus (100%)
2 3249 bp 44.54 6.28 100.65
RTP_07252018_0_1um_scaffold_25308
Phylum: Bacteroidetes (100%)
3 2246 bp 44.84 6.28 93.23
RTP_07252018_0_1um_scaffold_33895
Order: Sphingobacteriales (66.67%)
3 1835 bp 46.05 6.29 97.11
RTP_07252018_0_1um_scaffold_28933
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (50%)
2 2050 bp 45.61 6.29 98.93
RTP_07252018_0_1um_scaffold_22552
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (83.33%)
6 4524 bp 44.47 6.30 82.56
RTP_07252018_0_1um_scaffold_15168
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (60%)
5 4140 bp 46.06 6.30 91.96
RTP_07252018_0_1um_scaffold_18810
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (50%)
2 2736 bp 43.02 6.30 77.41
RTP_07252018_0_1um_scaffold_18814
Species: Flavihumibacter sp. ZG627 (66.67%)
3 2736 bp 46.86 6.30 85.75
RTP_07252018_0_1um_scaffold_18569
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (100%)
4 2762 bp 44.82 6.30 81.35
RTP_07252018_0_1um_scaffold_32675
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (100%)
2 1882 bp 48.25 6.30 92.14
RTP_07252018_0_1um_scaffold_25953
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (50%)
2 2211 bp 45.59 6.31 90.10
RTP_07252018_0_1um_scaffold_7703
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (53.85%)
13 10120 bp 44.96 6.31 91.99
RTP_07252018_0_1um_scaffold_18379
Phylum: Bacteroidetes (100%)
3 2782 bp 48.06 6.31 90.91
RTP_07252018_0_1um_scaffold_12650
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (100%)
4 4251 bp 43.66 6.32 93.51
RTP_07252018_0_1um_scaffold_7122
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (75%)
4 5221 bp 45.01 6.32 86.71
RTP_07252018_0_1um_scaffold_24363
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (100%)
4 2302 bp 46.66 6.32 89.92
RTP_07252018_0_1um_scaffold_33018
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (71.43%)
7 3443 bp 46.30 6.32 82.78
RTP_07252018_0_1um_scaffold_3410
Phylum: Bacteroidetes (75%)
8 8693 bp 45.35 6.33 89.52
RTP_07252018_0_1um_scaffold_7664
Phylum: Bacteroidetes (80%)
10 9607 bp 44.12 6.34 89.06
RTP_07252018_0_1um_scaffold_6693
Order: Cytophagales (60%)
5 5444 bp 46.51 6.34 88.17
RTP_07252018_0_1um_scaffold_16380
Order: Sphingobacteriales (50%)
4 3004 bp 47.00 6.34 76.27
RTP_07252018_0_1um_scaffold_7994
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (85.71%)
7 4827 bp 45.56 6.34 87.57
RTP_07252018_0_1um_scaffold_11366
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (60%)
5 3808 bp 43.41 6.34 92.02
RTP_07252018_0_1um_scaffold_1852
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (53.33%)
15 13621 bp 45.19 6.34 90.81
RTP_07252018_0_1um_scaffold_9697
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (100%)
3 4228 bp 46.81 6.35 92.38
RTP_07252018_0_1um_scaffold_28336
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (100%)
3 2080 bp 43.03 6.35 84.52
RTP_07252018_0_1um_scaffold_7406
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (57.14%)
7 5073 bp 45.67 6.36 83.91
RTP_07252018_0_1um_scaffold_10051
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (80%)
5 4129 bp 44.66 6.36 91.52
RTP_07252018_0_1um_scaffold_8541
Species: Flavihumibacter solisilvae (50%)
6 5804 bp 42.57 6.36 88.59
RTP_07252018_0_1um_scaffold_19604
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (75%)
4 3509 bp 45.20 6.37 86.69
RTP_07252018_0_1um_scaffold_2412
Phylum: Bacteroidetes (81.82%)
11 11233 bp 45.94 6.37 98.44
RTP_07252018_0_1um_scaffold_6779
Phylum: Bacteroidetes (100%)
6 5391 bp 44.74 6.37 93.43
RTP_07252018_0_1um_scaffold_20971
Species: Niabella soli (50%)
4 2544 bp 44.54 6.37 94.93
RTP_07252018_0_1um_scaffold_10821
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (66.67%)
3 3931 bp 48.44 6.37 94.02
RTP_07252018_0_1um_scaffold_16342
Species: Emticicia oligotrophica (50%)
2 3008 bp 44.22 6.38 87.57
RTP_07252018_0_1um_scaffold_35141
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (100%)
2 1788 bp 47.54 6.38 98.99
RTP_07252018_0_1um_scaffold_6358
Phylum: Bacteroidetes (71.43%)
7 5646 bp 45.39 6.38 89.48
RTP_07252018_0_1um_scaffold_9955
Order: Sphingobacteriales (60%)
5 4156 bp 46.80 6.39 77.38
RTP_07252018_0_1um_scaffold_10390
Species: Flavihumibacter sp. ZG627 (50%)
4 4040 bp 44.68 6.39 79.83
RTP_07252018_0_1um_scaffold_18740
Phylum: Bacteroidetes (60%)
5 3474 bp 43.35 6.39 87.39
RTP_07252018_0_1um_scaffold_14685
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (80%)
5 4532 bp 46.14 6.39 78.97
RTP_07252018_0_1um_scaffold_38187
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (100%)
2 1689 bp 45.06 6.39 95.56
RTP_07252018_0_1um_scaffold_36088
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (100%)
3 1757 bp 46.22 6.40 86.74
RTP_07252018_0_1um_scaffold_15839
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (50%)
4 3071 bp 44.51 6.40 85.77
RTP_07252018_0_1um_scaffold_5692
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (60%)
5 6083 bp 44.99 6.41 87.19
RTP_07252018_0_1um_scaffold_11786
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (80%)
5 4118 bp 45.12 6.41 89.39
RTP_07252018_0_1um_scaffold_4374
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (87.5%)
8 7283 bp 45.74 6.41 88.85
RTP_07252018_0_1um_scaffold_9844
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (66.67%)
3 4187 bp 45.09 6.41 91.86
RTP_07252018_0_1um_scaffold_27370
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (100%)
2 2129 bp 46.92 6.41 96.95
Displaying items 401-450 of 632 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.