ggKbase home page

RTP_07252018_0_1um_Bacteroidetes_45_6

In projects: RTP_07252018_0_1um  |  SOB_across_mines  |  SOB_across_mines

Consensus taxonomy: Bacteroidetes  →  Bacteria

Displaying items 501-550 of 632 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
RTP_07252018_0_1um_scaffold_3763
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (66.67%)
12 10379 bp 45.91 6.66 90.36
RTP_07252018_0_1um_scaffold_7018
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (60%)
5 5273 bp 46.29 6.66 85.45
RTP_07252018_0_1um_scaffold_13906
Order: Cytophagales (50%)
4 3349 bp 47.15 6.67 95.13
RTP_07252018_0_1um_scaffold_4855
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (86.67%)
15 14921 bp 44.49 6.67 88.79
RTP_07252018_0_1um_scaffold_7364
Phylum: Bacteroidetes (77.78%)
9 8215 bp 45.38 6.70 87.02
RTP_07252018_0_1um_scaffold_16724
Species: Niastella koreensis (50%)
4 5016 bp 46.65 6.70 86.84
RTP_07252018_0_1um_scaffold_7852
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (80%)
5 4882 bp 45.00 6.70 91.75
RTP_07252018_0_1um_scaffold_25107
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (100%)
3 2258 bp 46.55 6.71 85.96
RTP_07252018_0_1um_scaffold_8841
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (80%)
5 4508 bp 44.17 6.72 87.64
RTP_07252018_0_1um_scaffold_11532
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (50%)
8 3773 bp 43.31 6.72 93.03
RTP_07252018_0_1um_scaffold_2424
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (69.23%)
13 11189 bp 45.21 6.72 92.98
RTP_07252018_0_1um_scaffold_7087
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (57.14%)
7 5242 bp 44.54 6.72 79.26
RTP_07252018_0_1um_scaffold_46081
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (100%)
1 2407 bp 43.62 6.73 84.75
RTP_07252018_0_1um_scaffold_4371
Order: Flavobacteriales (80%)
5 7287 bp 43.58 6.73 97.20
RTP_07252018_0_1um_scaffold_23541
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (75%)
4 2359 bp 43.45 6.74 93.73
RTP_07252018_0_1um_scaffold_5218
Phylum: Bacteroidetes (100%)
7 6454 bp 44.02 6.74 87.25
RTP_07252018_0_1um_scaffold_5788
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (62.5%)
8 6011 bp 43.42 6.74 86.69
RTP_07252018_0_1um_scaffold_11907
Order: Sphingobacteriales (50%)
6 3697 bp 45.20 6.74 68.08
RTP_07252018_0_1um_scaffold_10567
Order: Sphingobacteriales (66.67%)
6 7393 bp 45.23 6.74 93.90
RTP_07252018_0_1um_scaffold_2797
Phylum: Bacteroidetes (92.31%)
13 12487 bp 46.65 6.75 91.37
RTP_07252018_0_1um_scaffold_29501
Genus: Flavihumibacter (66.67%)
3 2022 bp 43.72 6.75 86.20
RTP_07252018_0_1um_scaffold_6147
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (66.67%)
6 5765 bp 45.36 6.76 92.26
RTP_07252018_0_1um_scaffold_11115
Phylum: Bacteroidetes (60%)
5 3863 bp 42.76 6.76 64.15
RTP_07252018_0_1um_scaffold_9366
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (83.33%)
6 4324 bp 44.45 6.76 88.04
RTP_07252018_0_1um_scaffold_13383
Species: Haliscomenobacter hydrossis (50%)
4 3434 bp 44.32 6.77 97.50
RTP_07252018_0_1um_scaffold_10953
Species: Pedobacter sp. NL19 (50%)
4 3901 bp 42.89 6.77 94.13
RTP_07252018_0_1um_scaffold_22700
Species: Niastella koreensis (66.67%)
3 2415 bp 46.50 6.77 82.36
RTP_07252018_0_1um_scaffold_4160
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (50%)
6 7577 bp 46.47 6.77 97.52
RTP_07252018_0_1um_scaffold_16740
Species: Haliscomenobacter hydrossis (50%)
6 4565 bp 43.04 6.77 75.38
RTP_07252018_0_1um_scaffold_12661
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (50%)
10 6748 bp 45.09 6.78 78.73
RTP_07252018_0_1um_scaffold_2064
Phylum: Bacteroidetes (77.78%)
18 12605 bp 44.64 6.78 88.92
RTP_07252018_0_1um_scaffold_18227
Species: Mucilaginibacter paludis (55.56%)
9 6588 bp 48.68 6.79 89.80
RTP_07252018_0_1um_scaffold_3496
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (50%)
6 8535 bp 45.71 6.80 87.49
RTP_07252018_0_1um_scaffold_12810
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (60%)
5 3532 bp 46.26 6.80 94.79
RTP_07252018_0_1um_scaffold_17569
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (100%)
3 2867 bp 45.59 6.80 96.48
RTP_07252018_0_1um_scaffold_5962
Phylum: Bacteroidetes (71.43%)
7 5882 bp 46.00 6.81 86.76
RTP_07252018_0_1um_scaffold_12240
Order: Cytophagales (66.67%)
3 3632 bp 43.64 6.81 95.24
RTP_07252018_0_1um_scaffold_10639
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (66.67%)
6 3976 bp 44.06 6.83 88.28
RTP_07252018_0_1um_scaffold_34211
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (100%)
3 1822 bp 45.77 6.83 80.19
RTP_07252018_0_1um_scaffold_20229
Species: Niastella koreensis (100%)
3 2606 bp 44.55 6.85 86.11
RTP_07252018_0_1um_scaffold_20559
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (100%)
3 2579 bp 45.48 6.86 94.11
RTP_07252018_0_1um_scaffold_21003
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (100%)
6 3432 bp 43.59 6.86 79.46
RTP_07252018_0_1um_scaffold_3446
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (70%)
10 8631 bp 46.45 6.88 90.23
RTP_07252018_0_1um_scaffold_33454
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (66.67%)
3 1851 bp 44.30 6.89 86.87
RTP_07252018_0_1um_scaffold_5117
Order: Sphingobacteriales (50%)
4 6533 bp 43.72 6.89 91.24
RTP_07252018_0_1um_scaffold_4986
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (77.78%)
9 8060 bp 43.52 6.89 86.39
RTP_07252018_0_1um_scaffold_33000
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (100%)
3 1869 bp 45.85 6.90 92.13
RTP_07252018_0_1um_scaffold_13035
Phylum: Bacteroidetes (71.43%)
7 4435 bp 44.26 6.90 80.56
RTP_07252018_0_1um_scaffold_1224
Phylum: Bacteroidetes (77.78%)
18 19256 bp 46.08 6.93 82.32
RTP_07252018_0_1um_scaffold_13738
Order: Sphingobacteriales (50%)
4 3376 bp 47.87 6.93 96.06
Displaying items 501-550 of 632 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.