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RTP_07252018_0_1um_Bacteroidetes_45_6

In projects: RTP_07252018_0_1um  |  SOB_across_mines  |  SOB_across_mines

Consensus taxonomy: Bacteroidetes  →  Bacteria

Displaying items 301-350 of 632 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
RTP_07252018_0_1um_scaffold_7999
Order: Sphingobacteriales (50%)
4 4824 bp 43.33 5.94 91.23
RTP_07252018_0_1um_scaffold_3537
Phylum: Bacteroidetes (83.33%)
12 8477 bp 44.10 5.95 80.37
RTP_07252018_0_1um_scaffold_21984
Order: Flavobacteriales (50%)
4 2465 bp 45.31 5.96 89.57
RTP_07252018_0_1um_scaffold_7198
Phylum: Bacteroidetes (100%)
14 11762 bp 42.20 5.96 88.22
RTP_07252018_0_1um_scaffold_4377
Order: Sphingobacteriales (66.67%)
6 7279 bp 45.82 5.96 93.10
RTP_07252018_0_1um_scaffold_17615
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (50%)
4 2863 bp 43.07 5.97 71.57
RTP_07252018_0_1um_scaffold_28701
Species: Flavihumibacter sp. ZG627 (50%)
2 2062 bp 46.85 5.97 92.39
RTP_07252018_0_1um_scaffold_11816
Order: Sphingobacteriales (60%)
5 4416 bp 43.05 5.98 88.65
RTP_07252018_0_1um_scaffold_9582
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (80%)
5 4262 bp 47.56 5.98 84.68
RTP_07252018_0_1um_scaffold_11114
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (50%)
4 3863 bp 45.66 5.98 91.79
RTP_07252018_0_1um_scaffold_4410
Order: Sphingobacteriales (50%)
8 7228 bp 45.14 5.98 93.47
RTP_07252018_0_1um_scaffold_7021
Order: Cytophagales (66.67%)
3 5271 bp 41.93 5.98 87.36
RTP_07252018_0_1um_scaffold_7116
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (66.67%)
9 10972 bp 46.33 5.99 90.59
RTP_07252018_0_1um_scaffold_2729
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (70%)
10 11514 bp 45.31 5.99 89.89
RTP_07252018_0_1um_scaffold_7554
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (66.67%)
6 8090 bp 42.26 5.99 95.45
RTP_07252018_0_1um_scaffold_5894
Species: Flavihumibacter sp. ZG627 (60%)
5 5930 bp 45.30 5.99 97.23
RTP_07252018_0_1um_scaffold_7624
Phylum: Bacteroidetes (85.71%)
7 4977 bp 43.36 6.00 83.30
RTP_07252018_0_1um_scaffold_6142
Phylum: Bacteroidetes (100%)
5 8495 bp 44.67 6.00 98.28
RTP_07252018_0_1um_scaffold_7157
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (80%)
5 5202 bp 45.62 6.00 93.66
RTP_07252018_0_1um_scaffold_19743
Order: Cytophagales (66.67%)
3 2647 bp 45.79 6.01 99.40
RTP_07252018_0_1um_scaffold_7916
Phylum: Bacteroidetes (60%)
5 4855 bp 46.04 6.02 97.69
RTP_07252018_0_1um_scaffold_16688
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (100%)
3 2967 bp 44.46 6.02 80.38
RTP_07252018_0_1um_scaffold_27581
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (50%)
2 2118 bp 44.38 6.02 93.63
RTP_07252018_0_1um_scaffold_42216
Species: Niastella koreensis (50%)
2 1570 bp 45.54 6.02 90.57
RTP_07252018_0_1um_scaffold_8543
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (80%)
5 4613 bp 44.70 6.02 91.89
RTP_07252018_0_1um_scaffold_21699
Phylum: Bacteroidetes (80%)
5 2487 bp 45.28 6.03 83.84
RTP_07252018_0_1um_scaffold_10441
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (80%)
5 6267 bp 43.80 6.03 96.51
RTP_07252018_0_1um_scaffold_9606
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (50%)
4 4255 bp 47.99 6.03 91.59
RTP_07252018_0_1um_scaffold_14658
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (50%)
4 3234 bp 46.57 6.03 87.72
RTP_07252018_0_1um_scaffold_20461
Order: Flavobacteriales (50%)
4 2587 bp 40.82 6.03 83.26
RTP_07252018_0_1um_scaffold_2235
Phylum: Bacteroidetes (84.62%)
13 12518 bp 45.55 6.04 91.02
RTP_07252018_0_1um_scaffold_6408
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (81.82%)
11 9723 bp 44.98 6.05 85.59
RTP_07252018_0_1um_scaffold_22107
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (60%)
5 3346 bp 43.16 6.05 78.36
RTP_07252018_0_1um_scaffold_29824
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (100%)
2 2007 bp 45.49 6.05 97.01
RTP_07252018_0_1um_scaffold_10836
Phylum: Bacteroidetes (66.67%)
9 4886 bp 41.26 6.05 89.77
RTP_07252018_0_1um_scaffold_10893
Species: Runella slithyformis (60%)
5 4722 bp 45.89 6.07 95.62
RTP_07252018_0_1um_scaffold_4818
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (100%)
5 6792 bp 44.70 6.07 93.37
RTP_07252018_0_1um_scaffold_22612
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (100%)
3 2420 bp 47.60 6.07 98.43
RTP_07252018_0_1um_scaffold_19793
Phylum: Bacteroidetes (83.33%)
6 3831 bp 44.37 6.07 88.18
RTP_07252018_0_1um_scaffold_35509
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (100%)
2 1776 bp 45.33 6.08 82.43
RTP_07252018_0_1um_scaffold_9520
Phylum: Bacteroidetes (83.33%)
6 5185 bp 45.92 6.08 81.29
RTP_07252018_0_1um_scaffold_12825
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (100%)
4 3529 bp 45.40 6.08 95.38
RTP_07252018_0_1um_scaffold_41187
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (100%)
2 1600 bp 47.00 6.09 97.31
RTP_07252018_0_1um_scaffold_13485
Phylum: Bacteroidetes (100%)
3 3417 bp 45.60 6.10 84.55
RTP_07252018_0_1um_scaffold_8465
Phylum: Bacteroidetes (66.67%)
6 4648 bp 43.59 6.10 76.87
RTP_07252018_0_1um_scaffold_6056
Phylum: Bacteroidetes (62.5%)
8 5822 bp 42.39 6.11 83.01
RTP_07252018_0_1um_scaffold_6149
Species: Pedobacter heparinus (75%)
4 5764 bp 46.04 6.12 96.34
RTP_07252018_0_1um_scaffold_20614
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (50%)
2 2574 bp 44.72 6.12 81.93
RTP_07252018_0_1um_scaffold_10395
Species: Arcticibacter svalbardensis (66.67%)
3 4039 bp 45.01 6.13 95.82
RTP_07252018_0_1um_scaffold_34534
Phylum: Bacteroidetes (100%)
3 1810 bp 44.14 6.13 94.97
Displaying items 301-350 of 632 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.